printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild fasttree 2>&1 WARNING: your info file index has not been updated for 22 days. You should run 'fink selfupdate' to get the latest package descriptions. The package 'fasttree' will be built without being installed. Reading build dependency for fasttree-2.1.7-2... Reading dependency for fasttree-2.1.7-2... Reading build conflict for fasttree-2.1.7-2... The package 'gcc49-compiler' will be installed. Reading dependency for gcc49-compiler-4.9.1-1000... Reading runtime dependency for gcc49-compiler-4.9.1-1000... The package 'gcc49-shlibs' will be installed. Reading dependency for gcc49-shlibs-4.9.1-1000... Reading runtime dependency for gcc49-shlibs-4.9.1-1000... The package 'gmp5-shlibs' will be installed. Reading dependency for gmp5-shlibs-6.0.0a-1... Reading runtime dependency for gmp5-shlibs-6.0.0a-1... The package 'libgmpxx5-shlibs' will be installed. Reading dependency for libgmpxx5-shlibs-6.0.0a-1... Reading runtime dependency for libgmpxx5-shlibs-6.0.0a-1... The package 'libmpfr4-shlibs' will be installed. Reading dependency for libmpfr4-shlibs-3.1.2-1... Reading runtime dependency for libmpfr4-shlibs-3.1.2-1... The package 'cloog-org2-shlibs' will be installed. Reading dependency for cloog-org2-shlibs-0.18.2-1... Reading runtime dependency for cloog-org2-shlibs-0.18.2-1... The package 'isl-shlibs' will be installed. Reading dependency for isl-shlibs-0.12.2-2... Reading runtime dependency for isl-shlibs-0.12.2-2... The package 'libmpc3-shlibs' will be installed. Reading dependency for libmpc3-shlibs-1.0.2-1... Reading runtime dependency for libmpc3-shlibs-1.0.2-1... The following package will be rebuilt: fasttree The following 8 additional packages will be installed: cloog-org2-shlibs gcc49-compiler gcc49-shlibs gmp5-shlibs isl-shlibs libgmpxx5-shlibs libmpc3-shlibs libmpfr4-shlibs Do you want to continue? [Y/n] (assuming default) Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libgmpxx5-shlibs_6.0.0a-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/gmp5-shlibs_6.0.0a-1_darwin-x86_64.deb Selecting previously deselected package libgmpxx5-shlibs. (Reading database ... 4405 files and directories currently installed.) Unpacking libgmpxx5-shlibs (from .../libgmpxx5-shlibs_6.0.0a-1_darwin-x86_64.deb) ... Selecting previously deselected package gmp5-shlibs. Unpacking gmp5-shlibs (from .../gmp5-shlibs_6.0.0a-1_darwin-x86_64.deb) ... Setting up gmp5-shlibs (6.0.0a-1) ... Setting up libgmpxx5-shlibs (6.0.0a-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libmpfr4-shlibs_3.1.2-1_darwin-x86_64.deb Selecting previously deselected package libmpfr4-shlibs. (Reading database ... 4434 files and directories currently installed.) Unpacking libmpfr4-shlibs (from .../libmpfr4-shlibs_3.1.2-1_darwin-x86_64.deb) ... Setting up libmpfr4-shlibs (3.1.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/devel/isl-shlibs_0.12.2-2_darwin-x86_64.deb Selecting previously deselected package isl-shlibs. (Reading database ... 4447 files and directories currently installed.) Unpacking isl-shlibs (from .../isl-shlibs_0.12.2-2_darwin-x86_64.deb) ... Setting up isl-shlibs (0.12.2-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libmpc3-shlibs_1.0.2-1_darwin-x86_64.deb Selecting previously deselected package libmpc3-shlibs. (Reading database ... 4448 files and directories currently installed.) Unpacking libmpc3-shlibs (from .../libmpc3-shlibs_1.0.2-1_darwin-x86_64.deb) ... Setting up libmpc3-shlibs (1.0.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/devel/cloog-org2-shlibs_0.18.2-1_darwin-x86_64.deb Selecting previously deselected package cloog-org2-shlibs. (Reading database ... 4451 files and directories currently installed.) Unpacking cloog-org2-shlibs (from .../cloog-org2-shlibs_0.18.2-1_darwin-x86_64.deb) ... Setting up cloog-org2-shlibs (0.18.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc49-compiler_4.9.1-1000_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb Selecting previously deselected package gcc49-compiler. (Reading database ... 4452 files and directories currently installed.) Unpacking gcc49-compiler (from .../gcc49-compiler_4.9.1-1000_darwin-x86_64.deb) ... Selecting previously deselected package gcc49-shlibs. Unpacking gcc49-shlibs (from .../gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb) ... Setting up gcc49-shlibs (4.9.1-1000) ... Clearing dependency_libs of .la files being installed Setting up gcc49-compiler (4.9.1-1000) ... Clearing dependency_libs of .la files being installed Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-fasttree-2.1.7-2 /sw/build.build dpkg-deb: building package `fink-buildlock-fasttree-2.1.7-2' in `/sw/build.build/fink-buildlock-fasttree-2.1.7-2_2014.08.16-08.51.06_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-fasttree-2.1.7-2_2014.08.16-08.51.06_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-fasttree-2.1.7-2. (Reading database ... 9989 files and directories currently installed.) Unpacking fink-buildlock-fasttree-2.1.7-2 (from .../fink-buildlock-fasttree-2.1.7-2_2014.08.16-08.51.06_darwin-x86_64.deb) ... Setting up fink-buildlock-fasttree-2.1.7-2 (2014.08.16-08.51.06) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.iwUA3 cp /sw/src/FastTree-2.1.7.c . sudo -u fink-bld [ENV] sh -c /tmp/fink.y68z6 gcc-fsf-4.9 -O3 -finline-functions -funroll-loops -Wall -o FastTree FastTree-2.1.7.c -lm FastTree-2.1.7.c: In function 'PosteriorProfile': FastTree-2.1.7.c:4800:15: warning: variable 'fAll' set but not used [-Wunused-but-set-variable] numeric_t fAll[128][4]; ^ FastTree-2.1.7.c: In function 'PairLogLk': FastTree-2.1.7.c:5146:15: warning: variable 'fAll' set but not used [-Wunused-but-set-variable] numeric_t fAll[128][4]; ^ FastTree-2.1.7.c: In function 'MLPairOptimize': FastTree-2.1.7.c:6099:10: warning: variable 'len5' set but not used [-Wunused-but-set-variable] double len5[5]; ^ gcc-fsf-4.9 -DOPENMP -fopenmp -O3 -finline-functions -funroll-loops -Wall -o FastTreeMP FastTree-2.1.7.c -lm FastTree-2.1.7.c: In function 'PosteriorProfile': FastTree-2.1.7.c:4800:15: warning: variable 'fAll' set but not used [-Wunused-but-set-variable] numeric_t fAll[128][4]; ^ FastTree-2.1.7.c: In function 'PairLogLk': FastTree-2.1.7.c:5146:15: warning: variable 'fAll' set but not used [-Wunused-but-set-variable] numeric_t fAll[128][4]; ^ FastTree-2.1.7.c: In function 'MLPairOptimize': FastTree-2.1.7.c:6099:10: warning: variable 'len5' set but not used [-Wunused-but-set-variable] double len5[5]; ^ /bin/rm -rf /sw/build.build/root-fasttree-2.1.7-2 /bin/mkdir -p /sw/build.build/root-fasttree-2.1.7-2/sw /bin/mkdir -p /sw/build.build/root-fasttree-2.1.7-2/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-fasttree-2.1.7-2 sudo -u fink-bld [ENV] sh -c /tmp/fink.C7XDs mkdir /sw/build.build/root-fasttree-2.1.7-2/sw/bin cp FastTree FastTreeMP /sw/build.build/root-fasttree-2.1.7-2/sw/bin head -n 40 FastTree-2.1.7.c > LICENSE head -n 285 FastTree-2.1.7.c | tail -n 245 > README sudo -u fink-bld [ENV] sh -c /tmp/fink.j_K4z /usr/bin/install -d -m 700 /sw/build.build/root-fasttree-2.1.7-2/sw/share/doc/fasttree /bin/cp -r LICENSE /sw/build.build/root-fasttree-2.1.7-2/sw/share/doc/fasttree/ /bin/cp -r README /sw/build.build/root-fasttree-2.1.7-2/sw/share/doc/fasttree/ /bin/chmod -R go=u-w /sw/build.build/root-fasttree-2.1.7-2/sw/share/doc/fasttree /bin/rm -f /sw/build.build/root-fasttree-2.1.7-2/sw/info/dir /sw/build.build/root-fasttree-2.1.7-2/sw/info/dir.old /sw/build.build/root-fasttree-2.1.7-2/sw/share/info/dir /sw/build.build/root-fasttree-2.1.7-2/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-fasttree-2.1.7-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `fasttree' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/fasttree_2.1.7-2_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-fasttree-2.1.7-2 (Reading database ... 9990 files and directories currently installed.) Removing fink-buildlock-fasttree-2.1.7-2 ...