printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild gmm 2>&1 The package 'gmm' will be built without being installed. Reading build dependency for gmm-4.1-32... Reading dependency for gmm-4.1-32... Reading build conflict for gmm-4.1-32... The following package will be rebuilt: gmm curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/gmm-4.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 99 464k 99 463k 0 0 512k 0 --:--:-- --:--:-- --:--:-- 511k 100 464k 100 464k 0 0 512k 0 --:--:-- --:--:-- --:--:-- 512k Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-gmm-4.1-32 /sw/build.build dpkg-deb: building package `fink-buildlock-gmm-4.1-32' in `/sw/build.build/fink-buildlock-gmm-4.1-32_2014.07.30-07.46.59_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-gmm-4.1-32_2014.07.30-07.46.59_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-gmm-4.1-32. (Reading database ... 4296 files and directories currently installed.) Unpacking fink-buildlock-gmm-4.1-32 (from .../fink-buildlock-gmm-4.1-32_2014.07.30-07.46.59_darwin-x86_64.deb) ... Setting up fink-buildlock-gmm-4.1-32 (2014.07.30-07.46.59) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.tdsPW env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/gmm-4.1.tar.gz gmm-4.1/ gmm-4.1/Makefile.in gmm-4.1/Makefile.am gmm-4.1/m4/ gmm-4.1/m4/ltoptions.m4 gmm-4.1/m4/ax_check_cxx_flag.m4 gmm-4.1/m4/lt~obsolete.m4 gmm-4.1/m4/ax_prefix_config_h.m4 gmm-4.1/m4/ltversion.m4 gmm-4.1/m4/ltsugar.m4 gmm-4.1/m4/libtool.m4 gmm-4.1/configure.in gmm-4.1/config.guess gmm-4.1/tests/ gmm-4.1/tests/Makefile.in gmm-4.1/tests/Makefile.am gmm-4.1/tests/gmm_torture02_baseop.cc gmm-4.1/tests/dummy.cc gmm-4.1/tests/gmm_torture05_mult.cc gmm-4.1/tests/make_gmm_test.pl gmm-4.1/tests/gmm_torture10_qr.cc gmm-4.1/tests/gmm_torture01_lusolve.cc gmm-4.1/tests/gmm_torture20_iterative_solvers.cc gmm-4.1/tests/gmm_torture06_mat_mult.cc gmm-4.1/tests/gmm_torture15_sub.cc gmm-4.1/depcomp gmm-4.1/NEWS gmm-4.1/INSTALL gmm-4.1/include/ gmm-4.1/include/Makefile.in gmm-4.1/include/Makefile.am gmm-4.1/include/gmm/ gmm-4.1/include/gmm/gmm_sub_vector.h gmm-4.1/include/gmm/gmm_iter.h gmm-4.1/include/gmm/gmm_dense_Householder.h gmm-4.1/include/gmm/gmm_kernel.h gmm-4.1/include/gmm/gmm_iter_solvers.h gmm-4.1/include/gmm/gmm_precond_mr_approx_inverse.h gmm-4.1/include/gmm/gmm_precond_ilut.h gmm-4.1/include/gmm/gmm_real_part.h gmm-4.1/include/gmm/gmm_sub_matrix.h gmm-4.1/include/gmm/gmm_solver_qmr.h gmm-4.1/include/gmm/gmm_precond_diagonal.h gmm-4.1/include/gmm/gmm_solver_Newton.h gmm-4.1/include/gmm/gmm_dense_lu.h gmm-4.1/include/gmm/gmm_opt.h gmm-4.1/include/gmm/gmm_dense_qr.h gmm-4.1/include/gmm/gmm_solver_idgmres.h gmm-4.1/include/gmm/gmm_blas_interface.h gmm-4.1/include/gmm/gmm_precond_ildltt.h gmm-4.1/include/gmm/gmm_condition_number.h gmm-4.1/include/gmm/gmm_lapack_interface.h gmm-4.1/include/gmm/gmm_interface.h gmm-4.1/include/gmm/gmm_solver_bicgstab.h gmm-4.1/include/gmm/gmm_algobase.h gmm-4.1/include/gmm/gmm_solver_constrained_cg.h gmm-4.1/include/gmm/gmm_inoutput.h gmm-4.1/include/gmm/gmm_superlu_interface.h gmm-4.1/include/gmm/gmm_std.h gmm-4.1/include/gmm/gmm_precond_ilutp.h gmm-4.1/include/gmm/gmm_vector_to_matrix.h gmm-4.1/include/gmm/gmm.h gmm-4.1/include/gmm/gmm_dense_sylvester.h gmm-4.1/include/gmm/gmm_matrix.h gmm-4.1/include/gmm/gmm_transposed.h gmm-4.1/include/gmm/gmm_solver_gmres.h gmm-4.1/include/gmm/gmm_least_squares_cg.h gmm-4.1/include/gmm/gmm_blas.h gmm-4.1/include/gmm/gmm_except.h gmm-4.1/include/gmm/gmm_domain_decomp.h gmm-4.1/include/gmm/gmm_interface_bgeot.h gmm-4.1/include/gmm/gmm_precond_ildlt.h gmm-4.1/include/gmm/gmm_vector.h gmm-4.1/include/gmm/gmm_solver_Schwarz_additive.h gmm-4.1/include/gmm/gmm_conjugated.h gmm-4.1/include/gmm/gmm_precond_ilu.h gmm-4.1/include/gmm/gmm_precond.h gmm-4.1/include/gmm/gmm_range_basis.h gmm-4.1/include/gmm/gmm_ref.h gmm-4.1/include/gmm/gmm_def.h gmm-4.1/include/gmm/gmm_tri_solve.h gmm-4.1/include/gmm/gmm_solver_cg.h gmm-4.1/include/gmm/gmm_solver_bfgs.h gmm-4.1/include/gmm/gmm_modified_gram_schmidt.h gmm-4.1/include/gmm/gmm_sub_index.h gmm-4.1/include/gmm/gmm_scaled.h gmm-4.1/include/gmm/gmm_MUMPS_interface.h gmm-4.1/config.sub gmm-4.1/COPYING gmm-4.1/ltmain.sh gmm-4.1/README gmm-4.1/install-sh gmm-4.1/gmm-config.in gmm-4.1/configure gmm-4.1/config.h.in gmm-4.1/AUTHORS gmm-4.1/ChangeLog gmm-4.1/aclocal.m4 gmm-4.1/missing sudo -u fink-bld [ENV] sh -c /tmp/fink.NYkEz [ -r /sw/fink/dists/stable/main/finkinfo/libs/gmm.patch ] sudo -u fink-bld [ENV] sh -c /tmp/fink.tfSC8 patch -p1 < /sw/fink/dists/stable/main/finkinfo/libs/gmm.patch patching file include/gmm/gmm_vector.h sudo -u fink-bld [ENV] sh -c /tmp/fink.YzPjV /tmp/fink.B86Oa #!/bin/sh -ev case `sw_vers -productVersion | cut -d. -f1-2` in 10.5) if [ -x /usr/bin/gcc-4.2 ]; then export CC=gcc-4.2 CXX=g++-4.2 CPP=cpp-4.2 else export CC=gcc-4.0 CXX=g++-4.0 CPP=cpp-4.0 fi ;; 10.6) export CC=gcc CXX=g++ CPP=cpp ;; *) export CC=clang CXX=clang++ CPP="clang++ -E" ;; esac sw_vers -productVersion | cut -d. -f1-2 ./configure --prefix=/sw configuring gmm 4.1... checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether clang++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of clang++... gcc3 checking how to run the C++ preprocessor... clang++ -E checking whether the compiler recognizes the partial specialization syntax... yes checking build system type... i386-apple-darwin13.3.0 checking host system type... i386-apple-darwin13.3.0 you are compiling gmm on a i386-apple-darwin13.3.0 Using a unknown compiler checking for gcc... clang checking whether we are using the GNU C compiler... yes checking whether clang accepts -g... yes checking for clang option to accept ISO C89... none needed checking dependency style of clang... gcc3 checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by clang... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from clang object... ok checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking how to run the C preprocessor... clang++ -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether clang++ accepts -g... (cached) yes checking dependency style of clang++... (cached) gcc3 checking how to run the C++ preprocessor... clang++ -E checking for objdir... .libs checking if clang supports -fno-rtti -fno-exceptions... yes checking for clang option to produce PIC... -fno-common -DPIC checking if clang PIC flag -fno-common -DPIC works... yes checking if clang static flag -static works... no checking if clang supports -c -o file.o... yes checking if clang supports -c -o file.o... (cached) yes checking whether the clang linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.3.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by clang++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking whether the clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking for clang++ option to produce PIC... -fno-common -DPIC checking if clang++ PIC flag -fno-common -DPIC works... yes checking if clang++ static flag -static works... no checking if clang++ supports -c -o file.o... yes checking if clang++ supports -c -o file.o... (cached) yes checking whether the clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.3.0 dyld checking how to hardcode library paths into programs... immediate checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes configure: creating ./config.status config.status: creating Makefile config.status: creating tests/Makefile config.status: creating include/Makefile config.status: creating gmm-config config.status: WARNING: 'gmm-config.in' seems to ignore the --datarootdir setting config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make /Applications/Xcode.app/Contents/Developer/usr/bin/make all-recursive Making all in include make[2]: Nothing to be done for `all'. Making all in tests make[2]: Nothing to be done for `all'. make[2]: Nothing to be done for `all-am'. /bin/rm -rf /sw/build.build/root-gmm-4.1-32 /bin/mkdir -p /sw/build.build/root-gmm-4.1-32/sw /bin/mkdir -p /sw/build.build/root-gmm-4.1-32/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-gmm-4.1-32 sudo -u fink-bld [ENV] sh -c /tmp/fink.0swVp make -j1 install DESTDIR="/sw/build.build/root-gmm-4.1-32" Making install in include make[2]: Nothing to be done for `install-exec-am'. test -z "/sw/include" || .././install-sh -c -d "/sw/build.build/root-gmm-4.1-32/sw/include" .././install-sh -c -d '/sw/build.build/root-gmm-4.1-32/sw/include/gmm' /usr/bin/install -c -m 644 gmm/gmm_algobase.h gmm/gmm_blas.h gmm/gmm_blas_interface.h gmm/gmm_condition_number.h gmm/gmm_conjugated.h gmm/gmm_def.h gmm/gmm_dense_Householder.h gmm/gmm_dense_lu.h gmm/gmm_dense_qr.h gmm/gmm_dense_sylvester.h gmm/gmm_domain_decomp.h gmm/gmm_except.h gmm/gmm.h gmm/gmm_inoutput.h gmm/gmm_interface_bgeot.h gmm/gmm_interface.h gmm/gmm_iter.h gmm/gmm_iter_solvers.h gmm/gmm_kernel.h gmm/gmm_lapack_interface.h gmm/gmm_least_squares_cg.h gmm/gmm_matrix.h gmm/gmm_modified_gram_schmidt.h gmm/gmm_MUMPS_interface.h gmm/gmm_opt.h gmm/gmm_precond_diagonal.h gmm/gmm_precond.h gmm/gmm_precond_ildlt.h gmm/gmm_precond_ildltt.h gmm/gmm_precond_ilu.h gmm/gmm_precond_ilut.h gmm/gmm_precond_ilutp.h gmm/gmm_precond_mr_approx_inverse.h gmm/gmm_range_basis.h gmm/gmm_real_part.h gmm/gmm_ref.h gmm/gmm_scaled.h gmm/gmm_solver_bfgs.h gmm/gmm_solver_bicgstab.h gmm/gmm_solver_cg.h '/sw/build.build/root-gmm-4.1-32/sw/include/gmm' .././install-sh -c -d '/sw/build.build/root-gmm-4.1-32/sw/include/gmm' /usr/bin/install -c -m 644 gmm/gmm_solver_constrained_cg.h gmm/gmm_solver_gmres.h gmm/gmm_solver_idgmres.h gmm/gmm_solver_Newton.h gmm/gmm_solver_qmr.h gmm/gmm_solver_Schwarz_additive.h gmm/gmm_std.h gmm/gmm_sub_index.h gmm/gmm_sub_matrix.h gmm/gmm_sub_vector.h gmm/gmm_superlu_interface.h gmm/gmm_transposed.h gmm/gmm_tri_solve.h gmm/gmm_vector.h gmm/gmm_vector_to_matrix.h '/sw/build.build/root-gmm-4.1-32/sw/include/gmm' Making install in tests make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. sudo -u fink-bld [ENV] sh -c /tmp/fink.jSwdR /usr/bin/install -d -m 700 /sw/build.build/root-gmm-4.1-32/sw/share/doc/gmm /bin/cp -r AUTHORS /sw/build.build/root-gmm-4.1-32/sw/share/doc/gmm/ /bin/cp -r COPYING /sw/build.build/root-gmm-4.1-32/sw/share/doc/gmm/ /bin/cp -r ChangeLog /sw/build.build/root-gmm-4.1-32/sw/share/doc/gmm/ /bin/cp -r INSTALL /sw/build.build/root-gmm-4.1-32/sw/share/doc/gmm/ /bin/cp -r NEWS /sw/build.build/root-gmm-4.1-32/sw/share/doc/gmm/ /bin/cp -r README /sw/build.build/root-gmm-4.1-32/sw/share/doc/gmm/ /bin/chmod -R go=u-w /sw/build.build/root-gmm-4.1-32/sw/share/doc/gmm /bin/rm -f /sw/build.build/root-gmm-4.1-32/sw/info/dir /sw/build.build/root-gmm-4.1-32/sw/info/dir.old /sw/build.build/root-gmm-4.1-32/sw/share/info/dir /sw/build.build/root-gmm-4.1-32/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-gmm-4.1-32 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs dpkg-deb: building package `gmm' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/gmm_4.1-32_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-gmm-4.1-32 (Reading database ... 4297 files and directories currently installed.) Removing fink-buildlock-gmm-4.1-32 ...