printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild h5utils 2>&1 The package 'h5utils' will be built without being installed. WARNING: The package h5utils Depends on libmatheval, but libmatheval only allows things to BuildDepend on it. Reading build dependency for h5utils-1.12.1-2... Reading dependency for h5utils-1.12.1-2... Reading build conflict for h5utils-1.12.1-2... The package 'hdf5.8' will be installed. Reading dependency for hdf5.8-1.8.13-1... Reading runtime dependency for hdf5.8-1.8.13-1... The package 'libpng16' will be installed. Reading dependency for libpng16-1.6.12-1... Reading runtime dependency for libpng16-1.6.12-1... The package 'libmatheval-shlibs' will be installed. Reading dependency for libmatheval-shlibs-1.1.11-1... Reading runtime dependency for libmatheval-shlibs-1.1.11-1... The package 'hdf5.8-shlibs' will be installed. Reading dependency for hdf5.8-shlibs-1.8.13-1... Reading runtime dependency for hdf5.8-shlibs-1.8.13-1... The package 'libpng16-shlibs' will be installed. Reading dependency for libpng16-shlibs-1.6.12-1... Reading runtime dependency for libpng16-shlibs-1.6.12-1... The package 'libmatheval' will be installed. Reading dependency for libmatheval-1.1.11-1... Reading runtime dependency for libmatheval-1.1.11-1... The package 'hdf5.8-bin' will be installed. Reading dependency for hdf5.8-bin-1.8.13-1... Reading runtime dependency for hdf5.8-bin-1.8.13-1... The package 'szip-shlibs' will be installed. Reading dependency for szip-shlibs-2.1-3... Reading runtime dependency for szip-shlibs-2.1-3... The package 'pkgconfig' will be installed. Reading dependency for pkgconfig-0.28-1... Reading runtime dependency for pkgconfig-0.28-1... The package 'glib2-shlibs' will be installed. Reading dependency for glib2-shlibs-2.22.4-8... Reading runtime dependency for glib2-shlibs-2.22.4-8... The package 'xdg-base' will be installed. Reading dependency for xdg-base-0.8-2... Reading runtime dependency for xdg-base-0.8-2... The following package will be rebuilt: h5utils The following 11 additional packages will be installed: glib2-shlibs hdf5.8 hdf5.8-bin hdf5.8-shlibs libmatheval libmatheval-shlibs libpng16 libpng16-shlibs pkgconfig szip-shlibs xdg-base Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/h5utils-1.12.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 153k 100 153k 0 0 227k 0 --:--:-- --:--:-- --:--:-- 227k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/libmatheval_1.1.11-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/libmatheval-shlibs_1.1.11-1_darwin-x86_64.deb Selecting previously deselected package libmatheval. (Reading database ... 4296 files and directories currently installed.) Unpacking libmatheval (from .../libmatheval_1.1.11-1_darwin-x86_64.deb) ... Selecting previously deselected package libmatheval-shlibs. Unpacking libmatheval-shlibs (from .../libmatheval-shlibs_1.1.11-1_darwin-x86_64.deb) ... Setting up libmatheval-shlibs (1.1.11-1) ... Setting up libmatheval (1.1.11-1) ... Clearing dependency_libs of .la files being installed * libmatheval: (libmatheval). Library for evaluating symbolic expressions install-info(/sw/share/info/libmatheval.info): creating new section `GNU libraries' Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/szip-shlibs_2.1-3_darwin-x86_64.deb Selecting previously deselected package szip-shlibs. (Reading database ... 4317 files and directories currently installed.) Unpacking szip-shlibs (from .../szip-shlibs_2.1-3_darwin-x86_64.deb) ... Setting up szip-shlibs (2.1-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/xdg-base_0.8-2_darwin-x86_64.deb Selecting previously deselected package xdg-base. (Reading database ... 4323 files and directories currently installed.) Unpacking xdg-base (from .../xdg-base_0.8-2_darwin-x86_64.deb) ... Setting up xdg-base (0.8-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/glib2-shlibs_2.22.4-8_darwin-x86_64.deb Selecting previously deselected package glib2-shlibs. (Reading database ... 4325 files and directories currently installed.) Unpacking glib2-shlibs (from .../glib2-shlibs_2.22.4-8_darwin-x86_64.deb) ... Setting up glib2-shlibs (2.22.4-8) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/hdf5.8_1.8.13-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/hdf5.8-shlibs_1.8.13-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/hdf5.8-bin_1.8.13-1_darwin-x86_64.deb Selecting previously deselected package hdf5.8. (Reading database ... 4552 files and directories currently installed.) Unpacking hdf5.8 (from .../hdf5.8_1.8.13-1_darwin-x86_64.deb) ... Selecting previously deselected package hdf5.8-shlibs. Unpacking hdf5.8-shlibs (from .../hdf5.8-shlibs_1.8.13-1_darwin-x86_64.deb) ... Selecting previously deselected package hdf5.8-bin. Unpacking hdf5.8-bin (from .../hdf5.8-bin_1.8.13-1_darwin-x86_64.deb) ... Setting up hdf5.8-shlibs (1.8.13-1) ... Setting up hdf5.8-bin (1.8.13-1) ... Setting up hdf5.8 (1.8.13-1) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/pkgconfig_0.28-1_darwin-x86_64.deb Selecting previously deselected package pkgconfig. (Reading database ... 4751 files and directories currently installed.) Unpacking pkgconfig (from .../pkgconfig_0.28-1_darwin-x86_64.deb) ... Setting up pkgconfig (0.28-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/libpng16_1.6.12-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libpng16-shlibs_1.6.12-1_darwin-x86_64.deb Selecting previously deselected package libpng16. (Reading database ... 4765 files and directories currently installed.) Unpacking libpng16 (from .../libpng16_1.6.12-1_darwin-x86_64.deb) ... Selecting previously deselected package libpng16-shlibs. Unpacking libpng16-shlibs (from .../libpng16-shlibs_1.6.12-1_darwin-x86_64.deb) ... Setting up libpng16-shlibs (1.6.12-1) ... Setting up libpng16 (1.6.12-1) ... Clearing dependency_libs of .la files being installed Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-h5utils-1.12.1-2 /sw/build.build dpkg-deb: building package `fink-buildlock-h5utils-1.12.1-2' in `/sw/build.build/fink-buildlock-h5utils-1.12.1-2_2014.07.31-08.20.26_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-h5utils-1.12.1-2_2014.07.31-08.20.26_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-h5utils-1.12.1-2. (Reading database ... 4802 files and directories currently installed.) Unpacking fink-buildlock-h5utils-1.12.1-2 (from .../fink-buildlock-h5utils-1.12.1-2_2014.07.31-08.20.26_darwin-x86_64.deb) ... Setting up fink-buildlock-h5utils-1.12.1-2 (2014.07.31-08.20.26) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.V8PSZ env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/h5utils-1.12.1.tar.gz h5utils-1.12.1/ h5utils-1.12.1/copyright.h h5utils-1.12.1/arrayh4.c h5utils-1.12.1/arrayh5.h h5utils-1.12.1/colormaps/ h5utils-1.12.1/colormaps/vga h5utils-1.12.1/colormaps/winter h5utils-1.12.1/colormaps/spring h5utils-1.12.1/colormaps/lines h5utils-1.12.1/colormaps/flag h5utils-1.12.1/colormaps/hot h5utils-1.12.1/colormaps/pink h5utils-1.12.1/colormaps/cool h5utils-1.12.1/colormaps/bluered h5utils-1.12.1/colormaps/jet h5utils-1.12.1/colormaps/bone h5utils-1.12.1/colormaps/colorcube h5utils-1.12.1/colormaps/copper h5utils-1.12.1/colormaps/green h5utils-1.12.1/colormaps/gray h5utils-1.12.1/colormaps/dkbluered h5utils-1.12.1/colormaps/hsv h5utils-1.12.1/colormaps/autumn h5utils-1.12.1/colormaps/prism h5utils-1.12.1/colormaps/yellow h5utils-1.12.1/colormaps/yarg h5utils-1.12.1/colormaps/summer h5utils-1.12.1/h5totxt.c h5utils-1.12.1/h5fromh4.1 h5utils-1.12.1/h5read.cc h5utils-1.12.1/aclocal.m4 h5utils-1.12.1/configure.ac h5utils-1.12.1/h5utils.c h5utils-1.12.1/ChangeLog h5utils-1.12.1/arrayh5.c h5utils-1.12.1/h5fromitxt.c h5utils-1.12.1/config.h.in h5utils-1.12.1/INSTALL h5utils-1.12.1/h5topng.c h5utils-1.12.1/COPYING h5utils-1.12.1/h5fromh4.c h5utils-1.12.1/h5totxt.1 h5utils-1.12.1/install-sh h5utils-1.12.1/README h5utils-1.12.1/writepng.h h5utils-1.12.1/NEWS h5utils-1.12.1/Makefile.in h5utils-1.12.1/configure h5utils-1.12.1/h5math.1 h5utils-1.12.1/h5utils.h h5utils-1.12.1/h4fromh5.c h5utils-1.12.1/writepng.c h5utils-1.12.1/h5fromtxt.c h5utils-1.12.1/h5tovtk.1 h5utils-1.12.1/h5tovtk.c h5utils-1.12.1/h5tov5d.1 h5utils-1.12.1/h5topng.1.in h5utils-1.12.1/arrayh4.h h5utils-1.12.1/depcomp h5utils-1.12.1/missing h5utils-1.12.1/h5math.c h5utils-1.12.1/Makefile.am h5utils-1.12.1/compile h5utils-1.12.1/AUTHORS h5utils-1.12.1/h5fromtxt.1 h5utils-1.12.1/h5tov5d.c sudo -u fink-bld [ENV] sh -c /tmp/fink.GvHXh [ -r /sw/fink/dists/stable/main/finkinfo/sci/h5utils.patch ] sudo -u fink-bld [ENV] sh -c /tmp/fink.GO9yz patch -p1 < /sw/fink/dists/stable/main/finkinfo/sci/h5utils.patch patching file writepng.c sudo -u fink-bld [ENV] sh -c /tmp/fink.Uz2H2 ./configure --prefix=/sw --mandir=/sw/build.build/root-h5utils-1.12.1-2/sw/share/man --without-octave --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sin in -lm... yes checking for snprintf... yes checking for inflate in -lz... yes checking for png_create_write_struct in -lpng... yes checking for evaluator_get_variables in -lmatheval... yes checking for h4toh5... no checking for h5toh4... no checking for jpeg_start_compress in -ljpeg... no configure: WARNING: can't find libjpeg: won't be able to compile h5fromh4 or h4fromh5 checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking hdf.h usability... no checking hdf.h presence... no checking for hdf.h... no checking hdf/hdf.h usability... no checking hdf/hdf.h presence... no checking for hdf/hdf.h... no checking for H5Fopen in -lhdf5... yes checking for v5dCreate in -lv5d... no checking vis5d/v5d.h usability... no checking vis5d/v5d.h presence... no checking for vis5d/v5d.h... no checking vis5d+/v5d.h usability... no checking vis5d+/v5d.h presence... no checking for vis5d+/v5d.h... no checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking for uint16_t... yes checking for uint32_t... yes checking for htons... yes checking size of float... 4 checking for htonl... yes configure: creating ./config.status config.status: creating Makefile config.status: creating h5topng.1 config.status: creating config.h config.status: executing depfiles commands make /Applications/Xcode.app/Contents/Developer/usr/bin/make all-am gcc -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -c h5totxt.c gcc -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -c arrayh5.c gcc -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -c h5utils.c gcc -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -c h5fromtxt.c gcc -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -c h5tovtk.c gcc -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -c h5math.c gcc -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -c h5topng.c gcc -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -c writepng.c gcc -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -c h5fromitxt.c arrayh5.c:304:10: warning: passing 'hssize_t *' (aka 'long long *') to parameter of type 'const hsize_t *' (aka 'const unsigned long long *') converts between pointers to integer types with different sign [-Wpointer-sign] start, NULL, count, NULL); ^~~~~ /sw/include/H5Spublic.h:112:22: note: passing argument to parameter 'start' here const hsize_t start[], ^ 1 warning generated. gcc -g -O2 -L/sw/lib -o h5totxt h5totxt.o arrayh5.o h5utils.o -lhdf5 -lz -lm gcc -g -O2 -L/sw/lib -o h5fromtxt h5fromtxt.o arrayh5.o h5utils.o -lhdf5 -lz -lm gcc -g -O2 -L/sw/lib -o h5tovtk h5tovtk.o arrayh5.o h5utils.o -lhdf5 -lz -lm gcc -g -O2 -L/sw/lib -o h5math h5math.o arrayh5.o h5utils.o -lmatheval -lhdf5 -lz -lm gcc -g -O2 -L/sw/lib -o h5fromitxt h5fromitxt.o arrayh5.o h5utils.o -lhdf5 -lz -lm gcc -g -O2 -L/sw/lib -o h5topng h5topng.o writepng.o arrayh5.o h5utils.o -lpng -lhdf5 -lz -lm /bin/rm -rf /sw/build.build/root-h5utils-1.12.1-2 /bin/mkdir -p /sw/build.build/root-h5utils-1.12.1-2/sw /bin/mkdir -p /sw/build.build/root-h5utils-1.12.1-2/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-h5utils-1.12.1-2 sudo -u fink-bld [ENV] sh -c /tmp/fink.NOPdI make -j1 install prefix=/sw/build.build/root-h5utils-1.12.1-2/sw test -z "/sw/build.build/root-h5utils-1.12.1-2/sw/bin" || ./install-sh -c -d "/sw/build.build/root-h5utils-1.12.1-2/sw/bin" /usr/bin/install -c h5totxt h5fromtxt h5tovtk h5math h5topng '/sw/build.build/root-h5utils-1.12.1-2/sw/bin' test -z "/sw/build.build/root-h5utils-1.12.1-2/sw/share/man/man1" || ./install-sh -c -d "/sw/build.build/root-h5utils-1.12.1-2/sw/share/man/man1" /usr/bin/install -c -m 644 h5totxt.1 h5fromtxt.1 h5tovtk.1 h5math.1 h5topng.1 '/sw/build.build/root-h5utils-1.12.1-2/sw/share/man/man1' test -z "/sw/build.build/root-h5utils-1.12.1-2/sw/share/h5utils" || ./install-sh -c -d "/sw/build.build/root-h5utils-1.12.1-2/sw/share/h5utils" ./install-sh -c -d '/sw/build.build/root-h5utils-1.12.1-2/sw/share/h5utils/colormaps' /usr/bin/install -c -m 644 colormaps/autumn colormaps/bluered colormaps/bone colormaps/colorcube colormaps/cool colormaps/copper colormaps/flag colormaps/gray colormaps/green colormaps/hot colormaps/hsv colormaps/jet colormaps/lines colormaps/pink colormaps/prism colormaps/spring colormaps/summer colormaps/vga colormaps/winter colormaps/yarg colormaps/yellow colormaps/dkbluered '/sw/build.build/root-h5utils-1.12.1-2/sw/share/h5utils/colormaps' test -z "" || ./install-sh -c -d "" sudo -u fink-bld [ENV] sh -c /tmp/fink.1yEHE /usr/bin/install -d -m 700 /sw/build.build/root-h5utils-1.12.1-2/sw/share/doc/h5utils /bin/cp -r AUTHORS /sw/build.build/root-h5utils-1.12.1-2/sw/share/doc/h5utils/ /bin/cp -r COPYING /sw/build.build/root-h5utils-1.12.1-2/sw/share/doc/h5utils/ /bin/cp -r ChangeLog /sw/build.build/root-h5utils-1.12.1-2/sw/share/doc/h5utils/ /bin/cp -r NEWS /sw/build.build/root-h5utils-1.12.1-2/sw/share/doc/h5utils/ /bin/cp -r README /sw/build.build/root-h5utils-1.12.1-2/sw/share/doc/h5utils/ /bin/chmod -R go=u-w /sw/build.build/root-h5utils-1.12.1-2/sw/share/doc/h5utils /bin/rm -f /sw/build.build/root-h5utils-1.12.1-2/sw/info/dir /sw/build.build/root-h5utils-1.12.1-2/sw/info/dir.old /sw/build.build/root-h5utils-1.12.1-2/sw/share/info/dir /sw/build.build/root-h5utils-1.12.1-2/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-h5utils-1.12.1-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `h5utils' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/h5utils_1.12.1-2_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-h5utils-1.12.1-2 (Reading database ... 4803 files and directories currently installed.) Removing fink-buildlock-h5utils-1.12.1-2 ...