printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild harminv 2>&1 The package 'harminv' will be built without being installed. Reading build dependency for harminv-1.3.1-9... Reading dependency for harminv-1.3.1-9... Reading build conflict for harminv-1.3.1-9... The package 'gcc48-compiler' will be installed. Reading dependency for gcc48-compiler-4.8.3-1000... Reading runtime dependency for gcc48-compiler-4.8.3-1000... The package 'gcc48-shlibs' will be installed. Reading dependency for gcc48-shlibs-4.8.3-1000... Reading runtime dependency for gcc48-shlibs-4.8.3-1000... The package 'gmp5-shlibs' will be installed. Reading dependency for gmp5-shlibs-6.0.0a-1... Reading runtime dependency for gmp5-shlibs-6.0.0a-1... The package 'libgmpxx5-shlibs' will be installed. Reading dependency for libgmpxx5-shlibs-6.0.0a-1... Reading runtime dependency for libgmpxx5-shlibs-6.0.0a-1... The package 'libmpfr4-shlibs' will be installed. Reading dependency for libmpfr4-shlibs-3.1.2-1... Reading runtime dependency for libmpfr4-shlibs-3.1.2-1... The package 'cloog-org2-shlibs' will be installed. Reading dependency for cloog-org2-shlibs-0.18.2-1... Reading runtime dependency for cloog-org2-shlibs-0.18.2-1... The package 'isl-shlibs' will be installed. Reading dependency for isl-shlibs-0.12.2-2... Reading runtime dependency for isl-shlibs-0.12.2-2... The package 'libmpc3-shlibs' will be installed. Reading dependency for libmpc3-shlibs-1.0.2-1... Reading runtime dependency for libmpc3-shlibs-1.0.2-1... The following package will be rebuilt: harminv The following 8 additional packages will be installed: cloog-org2-shlibs gcc48-compiler gcc48-shlibs gmp5-shlibs isl-shlibs libgmpxx5-shlibs libmpc3-shlibs libmpfr4-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/harminv-1.3.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 320k 0 1206 0 0 629 0 0:08:41 0:00:01 0:08:40 629 69 320k 69 221k 0 0 95670 0 0:00:03 0:00:02 0:00:01 95658 100 320k 100 320k 0 0 127k 0 0:00:02 0:00:02 --:--:-- 127k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libgmpxx5-shlibs_6.0.0a-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/gmp5-shlibs_6.0.0a-1_darwin-x86_64.deb Selecting previously deselected package libgmpxx5-shlibs. (Reading database ... 4296 files and directories currently installed.) Unpacking libgmpxx5-shlibs (from .../libgmpxx5-shlibs_6.0.0a-1_darwin-x86_64.deb) ... Selecting previously deselected package gmp5-shlibs. Unpacking gmp5-shlibs (from .../gmp5-shlibs_6.0.0a-1_darwin-x86_64.deb) ... Setting up gmp5-shlibs (6.0.0a-1) ... Setting up libgmpxx5-shlibs (6.0.0a-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libmpfr4-shlibs_3.1.2-1_darwin-x86_64.deb Selecting previously deselected package libmpfr4-shlibs. (Reading database ... 4325 files and directories currently installed.) Unpacking libmpfr4-shlibs (from .../libmpfr4-shlibs_3.1.2-1_darwin-x86_64.deb) ... Setting up libmpfr4-shlibs (3.1.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/devel/isl-shlibs_0.12.2-2_darwin-x86_64.deb Selecting previously deselected package isl-shlibs. (Reading database ... 4338 files and directories currently installed.) Unpacking isl-shlibs (from .../isl-shlibs_0.12.2-2_darwin-x86_64.deb) ... Setting up isl-shlibs (0.12.2-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libmpc3-shlibs_1.0.2-1_darwin-x86_64.deb Selecting previously deselected package libmpc3-shlibs. (Reading database ... 4339 files and directories currently installed.) Unpacking libmpc3-shlibs (from .../libmpc3-shlibs_1.0.2-1_darwin-x86_64.deb) ... Setting up libmpc3-shlibs (1.0.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/devel/cloog-org2-shlibs_0.18.2-1_darwin-x86_64.deb Selecting previously deselected package cloog-org2-shlibs. (Reading database ... 4342 files and directories currently installed.) Unpacking cloog-org2-shlibs (from .../cloog-org2-shlibs_0.18.2-1_darwin-x86_64.deb) ... Setting up cloog-org2-shlibs (0.18.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc48-compiler_4.8.3-1000_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc48-shlibs_4.8.3-1000_darwin-x86_64.deb Selecting previously deselected package gcc48-compiler. (Reading database ... 4343 files and directories currently installed.) Unpacking gcc48-compiler (from .../gcc48-compiler_4.8.3-1000_darwin-x86_64.deb) ... Selecting previously deselected package gcc48-shlibs. Unpacking gcc48-shlibs (from .../gcc48-shlibs_4.8.3-1000_darwin-x86_64.deb) ... Setting up gcc48-shlibs (4.8.3-1000) ... Clearing dependency_libs of .la files being installed Setting up gcc48-compiler (4.8.3-1000) ... Clearing dependency_libs of .la files being installed Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-harminv-1.3.1-9 /sw/build.build dpkg-deb: building package `fink-buildlock-harminv-1.3.1-9' in `/sw/build.build/fink-buildlock-harminv-1.3.1-9_2014.07.31-08.18.33_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-harminv-1.3.1-9_2014.07.31-08.18.33_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-harminv-1.3.1-9. (Reading database ... 9763 files and directories currently installed.) Unpacking fink-buildlock-harminv-1.3.1-9 (from .../fink-buildlock-harminv-1.3.1-9_2014.07.31-08.18.33_darwin-x86_64.deb) ... Setting up fink-buildlock-harminv-1.3.1-9 (2014.07.31-08.18.33) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.V_c6m env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/harminv-1.3.1.tar.gz harminv-1.3.1/ harminv-1.3.1/README harminv-1.3.1/acx_blas.m4 harminv-1.3.1/acx_lapack.m4 harminv-1.3.1/configure.ac harminv-1.3.1/aclocal.m4 harminv-1.3.1/harminv.1 harminv-1.3.1/harminv.h harminv-1.3.1/Makefile.am harminv-1.3.1/Makefile.in harminv-1.3.1/config.h.in harminv-1.3.1/harminv.pc.in harminv-1.3.1/configure harminv-1.3.1/AUTHORS harminv-1.3.1/COPYING harminv-1.3.1/ChangeLog harminv-1.3.1/INSTALL harminv-1.3.1/NEWS harminv-1.3.1/config.guess harminv-1.3.1/config.sub harminv-1.3.1/depcomp harminv-1.3.1/install-sh harminv-1.3.1/ltmain.sh harminv-1.3.1/missing harminv-1.3.1/harminv.c harminv-1.3.1/harminv-int.h harminv-1.3.1/check.h harminv-1.3.1/harminv-main.c harminv-1.3.1/copyright.h harminv-1.3.1/sines.c harminv-1.3.1/COPYRIGHT sudo -u fink-bld [ENV] sh -c /tmp/fink.l3InQ ./configure --prefix=/sw --mandir=/sw/share/man -with-blas="-Wl,-framework,Accelerate" -with-lapack="-Wl,-framework,Accelerate" --disable-dependency-tracking F77=gfortran-fsf-4.8 CC=gcc-fsf-4.8 CXX=g++-fsf-4.8 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... gcc-fsf-4.8 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-fsf-4.8 accepts -g... yes checking for gcc-fsf-4.8 option to accept ANSI C... none needed checking for style of include used by make... GNU checking dependency style of gcc-fsf-4.8... none checking whether make sets $(MAKE)... (cached) yes checking for a BSD-compatible install... /usr/bin/install -c checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran-fsf-4.8 accepts -g... yes checking how to get verbose linking output from gfortran-fsf-4.8... rm: conftest.dSYM: is a directory -v checking for Fortran libraries of gfortran-fsf-4.8... rm: conftest.dSYM: is a directory -L/sw/lib -L/sw/lib/gcc4.8/lib/gcc/x86_64-apple-darwin13.3.0/4.8.3 -L/sw/lib/gcc4.8/lib/gcc/x86_64-apple-darwin13.3.0/4.8.3/../../.. -lgfortran -lSystem -lgcc_ext.10.5 -lquadmath -lm checking for dummy main to link with Fortran libraries... rm: conftest.dSYM: is a directory none checking for Fortran name-mangling scheme... rm: conftest.dSYM: is a directory lower case, underscore, no extra underscore checking how to run the C preprocessor... gcc-fsf-4.8 -E checking for egrep... grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for C complex keyword... complex checking for C complex I constant... I checking for CX_LIMITED_RANGE_ON macro... no checking for carg... yes checking whether we are using the GNU C++ compiler... yes checking whether g++-fsf-4.8 accepts -g... yes rm: conftest.dSYM: is a directory checking dependency style of g++-fsf-4.8... none checking for long double... yes checking build system type... i686-apple-darwin13.3.0 checking host system type... i686-apple-darwin13.3.0 checking for a sed that does not truncate output... /usr/bin/sed checking for ld used by gcc-fsf-4.8... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... no checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... g++-fsf-4.8 -E checking the maximum length of command line arguments... 65536 checking command to parse /usr/bin/nm output from gcc-fsf-4.8 object... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if gcc-fsf-4.8 static flag works... rm: conftest.dSYM: is a directory yes checking if gcc-fsf-4.8 supports -fno-rtti -fno-exceptions... rm: conftest.dSYM: is a directory no checking for gcc-fsf-4.8 option to produce PIC... -fno-common checking if gcc-fsf-4.8 PIC flag -fno-common works... rm: conftest.dSYM: is a directory yes checking if gcc-fsf-4.8 supports -c -o file.o... rm: conftest.dSYM: is a directory yes checking whether the gcc-fsf-4.8 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.3.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++-fsf-4.8... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... no checking whether the g++-fsf-4.8 linker (/usr/bin/ld) supports shared libraries... yes checking for g++-fsf-4.8 option to produce PIC... -fno-common checking if g++-fsf-4.8 PIC flag -fno-common works... rm: conftest.dSYM: is a directory yes checking if g++-fsf-4.8 supports -c -o file.o... rm: conftest.dSYM: is a directory yes checking whether the g++-fsf-4.8 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.3.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran-fsf-4.8 option to produce PIC... -fno-common checking if gfortran-fsf-4.8 PIC flag -fno-common works... rm: conftest.dSYM: is a directory yes checking if gfortran-fsf-4.8 supports -c -o file.o... rm: conftest.dSYM: is a directory yes checking whether the gfortran-fsf-4.8 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.3.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking for sqrt in -lm... yes checking for sgemm_ in -Wl,-framework,Accelerate... yes checking for cheev_ in -Wl,-framework,Accelerate... yes configure: creating ./config.status config.status: creating Makefile config.status: creating harminv.pc config.status: creating config.h config.status: executing depfiles commands make /Applications/Xcode.app/Contents/Developer/usr/bin/make all-am /bin/sh ./libtool --tag=CC --mode=compile gcc-fsf-4.8 -DHAVE_CONFIG_H -I. -I. -I. -I/sw/include -g -O2 -c -o harminv.lo harminv.c gcc-fsf-4.8 -DHAVE_CONFIG_H -I. -I. -I. -I/sw/include -g -O2 -c harminv-main.c gcc-fsf-4.8 -DHAVE_CONFIG_H -I. -I. -I. -I/sw/include -g -O2 -c sines.c gcc-fsf-4.8 -DHAVE_CONFIG_H -I. -I. -I. -I/sw/include -g -O2 -c harminv.c -o harminv.o /bin/sh ./libtool --tag=CC --mode=link gcc-fsf-4.8 -g -O2 -L/sw/lib -o sines sines.o -Wl,-framework,Accelerate -Wl,-framework,Accelerate -lm -L/sw/lib -L/sw/lib/gcc4.8/lib/gcc/x86_64-apple-darwin13.3.0/4.8.3 -L/sw/lib/gcc4.8/lib/gcc/x86_64-apple-darwin13.3.0/4.8.3/../../.. -lgfortran -lSystem -lgcc_ext.10.5 -lquadmath -lm mkdir .libs gcc-fsf-4.8 -g -O2 -o sines sines.o -Wl,-framework -Wl,Accelerate -Wl,-framework -Wl,Accelerate -L/sw/lib -L/sw/lib/gcc4.8/lib/gcc/x86_64-apple-darwin13.3.0/4.8.3 -L/sw/lib/gcc4.8/lib/gcc/x86_64-apple-darwin13.3.0/4.8.3/../../.. /sw/lib/gcc4.8/lib/libgfortran.dylib -lSystem -lgcc_ext.10.5 /sw/lib/gcc4.8/lib/libquadmath.dylib -lm /bin/sh ./libtool --tag=CC --mode=link gcc-fsf-4.8 -g -O2 -L/sw/lib -o libharminv.la -rpath /sw/lib -version-info 2:4:0 harminv.lo -Wl,-framework,Accelerate -Wl,-framework,Accelerate -lm -L/sw/lib -L/sw/lib/gcc4.8/lib/gcc/x86_64-apple-darwin13.3.0/4.8.3 -L/sw/lib/gcc4.8/lib/gcc/x86_64-apple-darwin13.3.0/4.8.3/../../.. -lgfortran -lSystem -lgcc_ext.10.5 -lquadmath -lm ar cru .libs/libharminv.a harminv.o ranlib .libs/libharminv.a creating libharminv.la (cd .libs && rm -f libharminv.la && ln -s ../libharminv.la libharminv.la) /bin/sh ./libtool --tag=CC --mode=link gcc-fsf-4.8 -g -O2 -L/sw/lib -o harminv harminv-main.o libharminv.la -Wl,-framework,Accelerate -Wl,-framework,Accelerate -lm -L/sw/lib -L/sw/lib/gcc4.8/lib/gcc/x86_64-apple-darwin13.3.0/4.8.3 -L/sw/lib/gcc4.8/lib/gcc/x86_64-apple-darwin13.3.0/4.8.3/../../.. -lgfortran -lSystem -lgcc_ext.10.5 -lquadmath -lm gcc-fsf-4.8 -g -O2 -o harminv harminv-main.o -Wl,-framework -Wl,Accelerate -Wl,-framework -Wl,Accelerate -L/sw/lib ./.libs/libharminv.a -L/sw/lib/gcc4.8/lib/gcc/x86_64-apple-darwin13.3.0/4.8.3 -L/sw/lib/gcc4.8/lib/gcc/x86_64-apple-darwin13.3.0/4.8.3/../../.. /sw/lib/gcc4.8/lib/libgfortran.dylib -lSystem -lgcc_ext.10.5 /sw/lib/gcc4.8/lib/libquadmath.dylib -lm /bin/rm -rf /sw/build.build/root-harminv-1.3.1-9 /bin/mkdir -p /sw/build.build/root-harminv-1.3.1-9/sw /bin/mkdir -p /sw/build.build/root-harminv-1.3.1-9/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-harminv-1.3.1-9 sudo -u fink-bld [ENV] sh -c /tmp/fink.7WioU make install DESTDIR=/sw/build.build/root-harminv-1.3.1-9 /Applications/Xcode.app/Contents/Developer/usr/bin/make install-am test -z "/sw/lib" || /sw/build.build/harminv-1.3.1-9/harminv-1.3.1/install-sh -d "/sw/build.build/root-harminv-1.3.1-9/sw/lib" /bin/sh ./libtool --mode=install /usr/bin/install -c 'libharminv.la' '/sw/build.build/root-harminv-1.3.1-9/sw/lib/libharminv.la' /usr/bin/install -c .libs/libharminv.lai /sw/build.build/root-harminv-1.3.1-9/sw/lib/libharminv.la /usr/bin/install -c .libs/libharminv.a /sw/build.build/root-harminv-1.3.1-9/sw/lib/libharminv.a ranlib /sw/build.build/root-harminv-1.3.1-9/sw/lib/libharminv.a chmod 644 /sw/build.build/root-harminv-1.3.1-9/sw/lib/libharminv.a libtool: install: warning: remember to run `libtool --finish /sw/lib' test -z "/sw/bin" || /sw/build.build/harminv-1.3.1-9/harminv-1.3.1/install-sh -d "/sw/build.build/root-harminv-1.3.1-9/sw/bin" /bin/sh ./libtool --mode=install /usr/bin/install -c 'harminv' '/sw/build.build/root-harminv-1.3.1-9/sw/bin/harminv' /usr/bin/install -c harminv /sw/build.build/root-harminv-1.3.1-9/sw/bin/harminv test -z "/sw/include" || /sw/build.build/harminv-1.3.1-9/harminv-1.3.1/install-sh -d "/sw/build.build/root-harminv-1.3.1-9/sw/include" /usr/bin/install -c -m 644 'harminv.h' '/sw/build.build/root-harminv-1.3.1-9/sw/include/harminv.h' test -z "/sw/share/man/man1" || /sw/build.build/harminv-1.3.1-9/harminv-1.3.1/install-sh -d "/sw/build.build/root-harminv-1.3.1-9/sw/share/man/man1" /usr/bin/install -c -m 644 './harminv.1' '/sw/build.build/root-harminv-1.3.1-9/sw/share/man/man1/harminv.1' test -z "/sw/lib/pkgconfig" || /sw/build.build/harminv-1.3.1-9/harminv-1.3.1/install-sh -d "/sw/build.build/root-harminv-1.3.1-9/sw/lib/pkgconfig" /usr/bin/install -c -m 644 'harminv.pc' '/sw/build.build/root-harminv-1.3.1-9/sw/lib/pkgconfig/harminv.pc' sudo -u fink-bld [ENV] sh -c /tmp/fink._gyLc /usr/bin/install -d -m 700 /sw/build.build/root-harminv-1.3.1-9/sw/share/doc/harminv /bin/cp -r AUTHORS /sw/build.build/root-harminv-1.3.1-9/sw/share/doc/harminv/ /bin/cp -r COPYING /sw/build.build/root-harminv-1.3.1-9/sw/share/doc/harminv/ /bin/cp -r COPYRIGHT /sw/build.build/root-harminv-1.3.1-9/sw/share/doc/harminv/ /bin/cp -r ChangeLog /sw/build.build/root-harminv-1.3.1-9/sw/share/doc/harminv/ /bin/cp -r README /sw/build.build/root-harminv-1.3.1-9/sw/share/doc/harminv/ /bin/chmod -R go=u-w /sw/build.build/root-harminv-1.3.1-9/sw/share/doc/harminv /bin/rm -f /sw/build.build/root-harminv-1.3.1-9/sw/info/dir /sw/build.build/root-harminv-1.3.1-9/sw/info/dir.old /sw/build.build/root-harminv-1.3.1-9/sw/share/info/dir /sw/build.build/root-harminv-1.3.1-9/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-harminv-1.3.1-9 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `harminv' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/harminv_1.3.1-9_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-harminv-1.3.1-9 (Reading database ... 9764 files and directories currently installed.) Removing fink-buildlock-harminv-1.3.1-9 ...