printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild libmatio2 2>&1 The package 'libmatio2' will be built without being installed. Reading build dependency for libmatio2-1.5.2-1... Reading dependency for libmatio2-1.5.2-1... Reading dependency for libmatio2-shlibs-1.5.2-1... Reading build conflict for libmatio2-1.5.2-1... The package 'fink-package-precedence' will be installed. Reading dependency for fink-package-precedence-0.18-1... Reading runtime dependency for fink-package-precedence-0.18-1... The package 'hdf5.8' will be installed. Reading dependency for hdf5.8-1.8.13-1... Reading runtime dependency for hdf5.8-1.8.13-1... The package 'pkgconfig' will be installed. Reading dependency for pkgconfig-0.28-1... Reading runtime dependency for pkgconfig-0.28-1... The package 'hdf5.8-shlibs' will be installed. Reading dependency for hdf5.8-shlibs-1.8.13-1... Reading runtime dependency for hdf5.8-shlibs-1.8.13-1... The package 'hdf5.8-bin' will be installed. Reading dependency for hdf5.8-bin-1.8.13-1... Reading runtime dependency for hdf5.8-bin-1.8.13-1... The package 'szip-shlibs' will be installed. Reading dependency for szip-shlibs-2.1-3... Reading runtime dependency for szip-shlibs-2.1-3... The package 'glib2-shlibs' will be installed. Reading dependency for glib2-shlibs-2.22.4-8... Reading runtime dependency for glib2-shlibs-2.22.4-8... The package 'xdg-base' will be installed. Reading dependency for xdg-base-0.8-2... Reading runtime dependency for xdg-base-0.8-2... The following package will be rebuilt: libmatio2 The following 8 additional packages will be installed: fink-package-precedence glib2-shlibs hdf5.8 hdf5.8-bin hdf5.8-shlibs pkgconfig szip-shlibs xdg-base Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/matio-1.5.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 7988k 0 1203 0 0 1458 0 1:33:30 --:--:-- 1:33:30 1458 1 7988k 1 99667 0 0 53913 0 0:02:31 0:00:01 0:02:30 53903 5 7988k 5 464k 0 0 183k 0 0:00:43 0:00:02 0:00:41 182k 16 7988k 16 1280k 0 0 366k 0 0:00:21 0:00:03 0:00:18 366k 23 7988k 23 1910k 0 0 396k 0 0:00:20 0:00:04 0:00:16 396k 30 7988k 30 2441k 0 0 417k 0 0:00:19 0:00:05 0:00:14 486k 37 7988k 37 2994k 0 0 461k 0 0:00:17 0:00:06 0:00:11 623k 48 7988k 48 3888k 0 0 518k 0 0:00:15 0:00:07 0:00:08 690k 56 7988k 56 4495k 0 0 510k 0 0:00:15 0:00:08 0:00:07 604k 62 7988k 62 5001k 0 0 526k 0 0:00:15 0:00:09 0:00:06 659k 68 7988k 68 5456k 0 0 518k 0 0:00:15 0:00:10 0:00:05 645k 76 7988k 76 6075k 0 0 528k 0 0:00:15 0:00:11 0:00:04 615k 83 7988k 83 6630k 0 0 530k 0 0:00:15 0:00:12 0:00:03 548k 90 7988k 90 7198k 0 0 532k 0 0:00:15 0:00:13 0:00:02 574k 95 7988k 95 7622k 0 0 525k 0 0:00:15 0:00:14 0:00:01 524k 100 7988k 100 7988k 0 0 526k 0 0:00:15 0:00:15 --:--:-- 544k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/fink-package-precedence_0.18-1_darwin-x86_64.deb Selecting previously deselected package fink-package-precedence. (Reading database ... 4740 files and directories currently installed.) Unpacking fink-package-precedence (from .../fink-package-precedence_0.18-1_darwin-x86_64.deb) ... Setting up fink-package-precedence (0.18-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/szip-shlibs_2.1-3_darwin-x86_64.deb Selecting previously deselected package szip-shlibs. (Reading database ... 4741 files and directories currently installed.) Unpacking szip-shlibs (from .../szip-shlibs_2.1-3_darwin-x86_64.deb) ... Setting up szip-shlibs (2.1-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/xdg-base_0.8-2_darwin-x86_64.deb Selecting previously deselected package xdg-base. (Reading database ... 4747 files and directories currently installed.) Unpacking xdg-base (from .../xdg-base_0.8-2_darwin-x86_64.deb) ... Setting up xdg-base (0.8-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/glib2-shlibs_2.22.4-8_darwin-x86_64.deb Selecting previously deselected package glib2-shlibs. (Reading database ... 4749 files and directories currently installed.) Unpacking glib2-shlibs (from .../glib2-shlibs_2.22.4-8_darwin-x86_64.deb) ... Setting up glib2-shlibs (2.22.4-8) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/hdf5.8_1.8.13-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/hdf5.8-shlibs_1.8.13-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/hdf5.8-bin_1.8.13-1_darwin-x86_64.deb Selecting previously deselected package hdf5.8. (Reading database ... 4976 files and directories currently installed.) Unpacking hdf5.8 (from .../hdf5.8_1.8.13-1_darwin-x86_64.deb) ... Selecting previously deselected package hdf5.8-shlibs. Unpacking hdf5.8-shlibs (from .../hdf5.8-shlibs_1.8.13-1_darwin-x86_64.deb) ... Selecting previously deselected package hdf5.8-bin. Unpacking hdf5.8-bin (from .../hdf5.8-bin_1.8.13-1_darwin-x86_64.deb) ... Setting up hdf5.8-shlibs (1.8.13-1) ... Setting up hdf5.8-bin (1.8.13-1) ... Setting up hdf5.8 (1.8.13-1) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/pkgconfig_0.28-1_darwin-x86_64.deb Selecting previously deselected package pkgconfig. (Reading database ... 5175 files and directories currently installed.) Unpacking pkgconfig (from .../pkgconfig_0.28-1_darwin-x86_64.deb) ... Setting up pkgconfig (0.28-1) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-libmatio2-1.5.2-1 /sw/build.build dpkg-deb: building package `fink-buildlock-libmatio2-1.5.2-1' in `/sw/build.build/fink-buildlock-libmatio2-1.5.2-1_2014.08.05-05.48.47_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-libmatio2-1.5.2-1_2014.08.05-05.48.47_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-libmatio2-1.5.2-1. (Reading database ... 5189 files and directories currently installed.) Unpacking fink-buildlock-libmatio2-1.5.2-1 (from .../fink-buildlock-libmatio2-1.5.2-1_2014.08.05-05.48.47_darwin-x86_64.deb) ... Setting up fink-buildlock-libmatio2-1.5.2-1 (2014.08.05-05.48.47) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.9_spP env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/matio-1.5.2.tar.gz matio-1.5.2/ matio-1.5.2/COPYING matio-1.5.2/Makefile.am matio-1.5.2/Makefile.in matio-1.5.2/NEWS matio-1.5.2/README matio-1.5.2/aclocal.m4 matio-1.5.2/autogen.sh matio-1.5.2/config/ matio-1.5.2/configure matio-1.5.2/configure.ac matio-1.5.2/documentation/ matio-1.5.2/getopt/ matio-1.5.2/matio.pc.in matio-1.5.2/patches/ matio-1.5.2/share/ matio-1.5.2/src/ matio-1.5.2/test/ matio-1.5.2/tools/ matio-1.5.2/visual_studio/ matio-1.5.2/visual_studio/libmatio/ matio-1.5.2/visual_studio/matdump/ matio-1.5.2/visual_studio/matio.def matio-1.5.2/visual_studio/matio.sln matio-1.5.2/visual_studio/matioConfig.h matio-1.5.2/visual_studio/matio_pubconf.h matio-1.5.2/visual_studio/matio_vs2008.sln matio-1.5.2/visual_studio/matdump/matdump.vcproj matio-1.5.2/visual_studio/matdump/matdump.vcxproj matio-1.5.2/visual_studio/matdump/matdump.vcxproj.filters matio-1.5.2/visual_studio/libmatio/libmatio.vcproj matio-1.5.2/visual_studio/libmatio/libmatio.vcxproj matio-1.5.2/visual_studio/libmatio/libmatio.vcxproj.filters matio-1.5.2/tools/Makefile.am matio-1.5.2/tools/Makefile.in matio-1.5.2/tools/._matdump.c matio-1.5.2/tools/matdump.c matio-1.5.2/test/Makefile.am matio-1.5.2/test/Makefile.in matio-1.5.2/test/cell_api.at matio-1.5.2/test/datasets/ matio-1.5.2/test/mat4_read.at matio-1.5.2/test/mat4_read_be.at matio-1.5.2/test/mat4_readslab_be.at matio-1.5.2/test/mat4_readslab_le.at matio-1.5.2/test/mat5_compressed_extended_sparse.at matio-1.5.2/test/mat5_compressed_read_be.at matio-1.5.2/test/mat5_compressed_read_le.at matio-1.5.2/test/mat5_compressed_readslab_be.at matio-1.5.2/test/mat5_compressed_readslab_le.at matio-1.5.2/test/mat5_compressed_write.at matio-1.5.2/test/mat5_uncompressed_extended_sparse.at matio-1.5.2/test/mat5_uncompressed_read_be.at matio-1.5.2/test/mat5_uncompressed_read_le.at matio-1.5.2/test/mat5_uncompressed_readslab_be.at matio-1.5.2/test/mat5_uncompressed_readslab_le.at matio-1.5.2/test/mat5_uncompressed_write.at matio-1.5.2/test/mat73_compressed_extended_sparse.at matio-1.5.2/test/mat73_compressed_write.at matio-1.5.2/test/mat73_read_be.at matio-1.5.2/test/mat73_read_le.at matio-1.5.2/test/mat73_readslab_be.at matio-1.5.2/test/mat73_readslab_le.at matio-1.5.2/test/mat73_uncompressed_extended_sparse.at matio-1.5.2/test/mat73_write.at matio-1.5.2/test/package.m4 matio-1.5.2/test/struct_api.at matio-1.5.2/test/._test_mat.c matio-1.5.2/test/test_mat.c matio-1.5.2/test/test_snprintf.c matio-1.5.2/test/testsuite matio-1.5.2/test/testsuite.at matio-1.5.2/test/datasets/matio_test_cases.m matio-1.5.2/test/datasets/matio_test_cases_compressed_be.mat matio-1.5.2/test/datasets/matio_test_cases_compressed_le.mat matio-1.5.2/test/datasets/matio_test_cases_hdf_be.mat matio-1.5.2/test/datasets/matio_test_cases_hdf_le.mat matio-1.5.2/test/datasets/matio_test_cases_uncompressed_be.mat matio-1.5.2/test/datasets/matio_test_cases_uncompressed_le.mat matio-1.5.2/test/datasets/matio_test_cases_v4_be.mat matio-1.5.2/test/datasets/matio_test_cases_v4_le.mat matio-1.5.2/test/datasets/small_v4_be.mat matio-1.5.2/test/datasets/small_v4_le.mat matio-1.5.2/src/Makefile.am matio-1.5.2/src/Makefile.in matio-1.5.2/src/endian.c matio-1.5.2/src/inflate.c matio-1.5.2/src/io.c matio-1.5.2/src/._mat.c matio-1.5.2/src/mat.c matio-1.5.2/src/mat4.c matio-1.5.2/src/mat4.h matio-1.5.2/src/mat5.c matio-1.5.2/src/mat5.h matio-1.5.2/src/mat73.c matio-1.5.2/src/mat73.h matio-1.5.2/src/matio.h matio-1.5.2/src/matioConfig.h.in matio-1.5.2/src/matio_private.h matio-1.5.2/src/matio_pubconf.h.in matio-1.5.2/src/matvar_cell.c matio-1.5.2/src/matvar_struct.c matio-1.5.2/src/read_data.c matio-1.5.2/src/snprintf.c matio-1.5.2/share/test_file.mat matio-1.5.2/share/test_file_v6.mat matio-1.5.2/patches/inflate.patch matio-1.5.2/getopt/Makefile.am matio-1.5.2/getopt/Makefile.in matio-1.5.2/getopt/getopt.h matio-1.5.2/getopt/getopt_long.c matio-1.5.2/documentation/Makefile.am matio-1.5.2/documentation/Makefile.in matio-1.5.2/documentation/Mat_Close.3 matio-1.5.2/documentation/Mat_CreateVer.3 matio-1.5.2/documentation/Mat_GetFilename.3 matio-1.5.2/documentation/Mat_GetLibraryVersion.3 matio-1.5.2/documentation/Mat_GetVersion.3 matio-1.5.2/documentation/Mat_Open.3 matio-1.5.2/documentation/Mat_Rewind.3 matio-1.5.2/documentation/Mat_VarAddStructField.3 matio-1.5.2/documentation/Mat_VarCreate.3 matio-1.5.2/documentation/Mat_VarCreateStruct.3 matio-1.5.2/documentation/Mat_VarFree.3 matio-1.5.2/documentation/Mat_VarGetNumberOfFields.3 matio-1.5.2/documentation/Mat_VarGetStructFieldnames.3 matio-1.5.2/documentation/Mat_VarGetStructs.3 matio-1.5.2/documentation/Mat_VarGetStructsLinear.3 matio-1.5.2/documentation/Mat_VarRead.3 matio-1.5.2/documentation/Mat_VarReadInfo.3 matio-1.5.2/documentation/Mat_VarReadNext.3 matio-1.5.2/documentation/Mat_VarReadNextInfo.3 matio-1.5.2/documentation/Mat_VarWrite.3 matio-1.5.2/documentation/build.texi matio-1.5.2/documentation/intro.texi matio-1.5.2/documentation/matio_user_guide.texi matio-1.5.2/documentation/matvar_structure.texi matio-1.5.2/documentation/quick.texi matio-1.5.2/config/config.guess matio-1.5.2/config/config.sub matio-1.5.2/config/depcomp matio-1.5.2/config/install-sh matio-1.5.2/config/libtool.m4 matio-1.5.2/config/ltmain.sh matio-1.5.2/config/ltoptions.m4 matio-1.5.2/config/ltsugar.m4 matio-1.5.2/config/ltversion.m4 matio-1.5.2/config/lt~obsolete.m4 matio-1.5.2/config/matio_def_file_ver.m4 matio-1.5.2/config/matio_getopt_long.m4 matio-1.5.2/config/matio_hdf5.m4 matio-1.5.2/config/matio_int16_t.m4 matio-1.5.2/config/matio_int32_t.m4 matio-1.5.2/config/matio_int64_t.m4 matio-1.5.2/config/matio_int8_t.m4 matio-1.5.2/config/matio_lib_suffix.m4 matio-1.5.2/config/matio_matlab.m4 matio-1.5.2/config/matio_uint16_t.m4 matio-1.5.2/config/matio_uint32_t.m4 matio-1.5.2/config/matio_uint64_t.m4 matio-1.5.2/config/matio_uint8_t.m4 matio-1.5.2/config/matio_zlib.m4 matio-1.5.2/config/missing matio-1.5.2/config/texinfo.tex sudo -u fink-bld [ENV] sh -c /tmp/fink.r8R56 ./configure --prefix=/sw --mandir=/sw/share/man --with-hdf5=/sw --enable-shared --disable-static checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... config/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... x86_64-apple-darwin13.3.0 checking host system type... x86_64-apple-darwin13.3.0 checking for pgcc... no checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking debug mode... no checking profile mode... no checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin13.3.0 file names to x86_64-apple-darwin13.3.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin13.3.0 file names to toolchain format... func_convert_file_noop checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.3.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking whether make sets $(MAKE)... (cached) yes checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for pow in -lm... yes checking for ANSI C header files... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for getopt_long... internal checking size of double... 8 checking size of float... 4 checking size of long long... 8 checking size of long... 8 checking size of int... 4 checking size of short... 2 checking size of char... 1 checking size of void *... 8 checking size of size_t... 8 checking for mat_int64_t... int64_t checking for mat_uint64_t... uint64_t checking for mat_int32_t... int32_t checking for mat_uint32_t... uint32_t checking for mat_int16_t... int16_t checking for mat_uint16_t... uint16_t checking for mat_int8_t... int8_t checking for mat_uint8_t... uint8_t checking for va_copy()... yes checking for vsnprintf()... yes checking for snprintf()... yes checking for vasprintf()... yes checking for asprintf()... yes checking for matlab... no no checking for zlib Library... -lz checking for HDF5 software... -L/sw/lib -lhdf5 checking if HDF5 interface is v1.8... yes checking enable enable MAT v7.3 file support... yes checking for default MAT file version... MAT_FT_MAT5 checking enable extended sparse types... yes configure: creating ./config.status config.status: creating Makefile config.status: creating matio.pc config.status: creating src/Makefile config.status: creating getopt/Makefile config.status: creating tools/Makefile config.status: creating test/Makefile config.status: creating documentation/Makefile config.status: creating src/matioConfig.h config.status: creating src/matio_pubconf.h config.status: executing libtool commands config.status: executing test/atconfig commands MATIO Configuration Summary ============================================================== C Compiler: gcc CFLAGS: -MD Shared Libraries: yes Static Libraries: no default MAT version: MAT_FT_MAT5 Features -------------------------------------------- MAT v7.3 file support: yes Extended sparse support: yes Packages -------------------------------------------- zlib: -lz hdf5: -L/sw/lib -lhdf5 MATLAB: make Making all in src /Applications/Xcode.app/Contents/Developer/usr/bin/make all-am /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c -o snprintf.lo snprintf.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c -o endian.lo endian.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c -o io.lo io.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c -o inflate.lo inflate.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c -o read_data.lo read_data.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c -o mat5.lo mat5.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c -o mat4.lo mat4.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c -o mat.lo mat.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c snprintf.c -fno-common -DPIC -o .libs/snprintf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c io.c -fno-common -DPIC -o .libs/io.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c endian.c -fno-common -DPIC -o .libs/endian.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c inflate.c -fno-common -DPIC -o .libs/inflate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c mat5.c -fno-common -DPIC -o .libs/mat5.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c read_data.c -fno-common -DPIC -o .libs/read_data.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c mat.c -fno-common -DPIC -o .libs/mat.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c mat4.c -fno-common -DPIC -o .libs/mat4.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c -o matvar_cell.lo matvar_cell.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c -o matvar_struct.lo matvar_struct.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c -o mat73.lo mat73.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c matvar_cell.c -fno-common -DPIC -o .libs/matvar_cell.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c matvar_struct.c -fno-common -DPIC -o .libs/matvar_struct.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/sw/include -I. -I/sw/include -MD -c mat73.c -fno-common -DPIC -o .libs/mat73.o /bin/sh ../libtool --tag=CC --mode=link gcc -I. -I/sw/include -MD -version-info 2:2:0 -L/sw/lib -o libmatio.la -rpath /sw/lib snprintf.lo endian.lo io.lo inflate.lo read_data.lo mat5.lo mat4.lo mat.lo matvar_cell.lo matvar_struct.lo mat73.lo -lz -lm libtool: link: gcc -dynamiclib -Wl,-undefined -Wl,dynamic_lookup -o .libs/libmatio.2.dylib .libs/snprintf.o .libs/endian.o .libs/io.o .libs/inflate.o .libs/read_data.o .libs/mat5.o .libs/mat4.o .libs/mat.o .libs/matvar_cell.o .libs/matvar_struct.o .libs/mat73.o -L/sw/lib -lz -lm -install_name /sw/lib/libmatio.2.dylib -compatibility_version 3 -current_version 3.2 -Wl,-single_module libtool: link: (cd ".libs" && rm -f "libmatio.dylib" && ln -s "libmatio.2.dylib" "libmatio.dylib") libtool: link: ( cd ".libs" && rm -f "libmatio.la" && ln -s "../libmatio.la" "libmatio.la" ) Making all in getopt /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../src -I/sw/include -DREPLACE_GETOPT=1 -MD -c -o libgetopt_la-getopt_long.lo `test -f 'getopt_long.c' || echo './'`getopt_long.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I/sw/include -DREPLACE_GETOPT=1 -MD -c getopt_long.c -fno-common -DPIC -o .libs/libgetopt_la-getopt_long.o /bin/sh ../libtool --tag=CC --mode=link gcc -DREPLACE_GETOPT=1 -MD -L/sw/lib -o libgetopt.la libgetopt_la-getopt_long.lo -lm libtool: link: ar cru .libs/libgetopt.a .libs/libgetopt_la-getopt_long.o libtool: link: ranlib .libs/libgetopt.a libtool: link: ( cd ".libs" && rm -f "libgetopt.la" && ln -s "../libgetopt.la" "libgetopt.la" ) Making all in tools gcc -DHAVE_CONFIG_H -I. -I../src -I/sw/include -I../src -I../getopt -I/sw/include -MD -c matdump.c /bin/sh ../libtool --tag=CC --mode=link gcc -I../src -I../getopt -I/sw/include -MD -L/sw/lib -o matdump matdump.o ../src/libmatio.la ../getopt/libgetopt.la -L/sw/lib -lhdf5 -lz -lm libtool: link: gcc -I../src -I../getopt -I/sw/include -MD -o .libs/matdump matdump.o -L/sw/lib ../src/.libs/libmatio.dylib ../getopt/.libs/libgetopt.a /sw/lib/libhdf5.dylib -lz -lm Making all in test gcc -DHAVE_CONFIG_H -I. -I../src -I/sw/include -I../src -I../getopt -I/sw/include -MD -c test_mat.c gcc -DHAVE_CONFIG_H -I. -I../src -I/sw/include -I../src -I../getopt -I/sw/include -MD -c test_snprintf.c /bin/sh ../libtool --tag=CC --mode=link gcc -I../src -I../getopt -I/sw/include -MD -L../src -L/sw/lib -o test_snprintf test_snprintf.o ../src/libmatio.la ../getopt/libgetopt.la -L/sw/lib -lhdf5 -lz -lm test_mat.c:2525:58: warning: passing 'const char *' to parameter of type 'void *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] field = Mat_VarGetStructField(matvar,fieldname, ^~~~~~~~~ ../src/matio.h:278:64: note: passing argument to parameter 'name_or_index' here EXTERN matvar_t *Mat_VarGetStructField(matvar_t *matvar,void *name_or_index, ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=link gcc -I../src -I../getopt -I/sw/include -MD -L../src -L/sw/lib -o test_mat test_mat.o ../src/libmatio.la ../getopt/libgetopt.la -L/sw/lib -lhdf5 -lz -lm libtool: link: gcc -I../src -I../getopt -I/sw/include -MD -o .libs/test_snprintf test_snprintf.o -L../src -L/sw/lib ../src/.libs/libmatio.dylib ../getopt/.libs/libgetopt.a /sw/lib/libhdf5.dylib -lz -lm libtool: link: gcc -I../src -I../getopt -I/sw/include -MD -o .libs/test_mat test_mat.o -L../src -L/sw/lib ../src/.libs/libmatio.dylib ../getopt/.libs/libgetopt.a /sw/lib/libhdf5.dylib -lz -lm Making all in documentation make[1]: Nothing to be done for `all'. make[1]: Nothing to be done for `all-am'. fink-package-precedence --depfile-ext='\.d' --prohibit-bdep=libmatio,libmatio2 . Scanning /\.d$/ dependency files... ./libconftest.d ./getopt/.libs/libgetopt_la-getopt_long.d ./src/.libs/endian.d ./src/.libs/inflate.d ./src/.libs/io.d ./src/.libs/mat.d ./src/.libs/mat4.d ./src/.libs/mat5.d ./src/.libs/mat73.d ./src/.libs/matvar_cell.d ./src/.libs/matvar_struct.d ./src/.libs/read_data.d ./src/.libs/snprintf.d ./test/test_mat.d ./test/test_snprintf.d ./tools/matdump.d Looking for incorrect headers in 16 dependency files... Determining fink providers of 32 headers... 1 - 32 Found use of headers from 1 fink packages: hdf5.8 Scanning binaries for incorrect dyld linking... /bin/rm -rf /sw/build.build/root-libmatio2-1.5.2-1 /bin/mkdir -p /sw/build.build/root-libmatio2-1.5.2-1/sw /bin/mkdir -p /sw/build.build/root-libmatio2-1.5.2-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-libmatio2-1.5.2-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.4faoM make install DESTDIR=/sw/build.build/root-libmatio2-1.5.2-1 Making install in src test -z "/sw/lib" || ../config/install-sh -c -d "/sw/build.build/root-libmatio2-1.5.2-1/sw/lib" /bin/sh ../libtool --mode=install /usr/bin/install -c libmatio.la '/sw/build.build/root-libmatio2-1.5.2-1/sw/lib' libtool: install: /usr/bin/install -c .libs/libmatio.2.dylib /sw/build.build/root-libmatio2-1.5.2-1/sw/lib/libmatio.2.dylib libtool: install: (cd /sw/build.build/root-libmatio2-1.5.2-1/sw/lib && { ln -s -f libmatio.2.dylib libmatio.dylib || { rm -f libmatio.dylib && ln -s libmatio.2.dylib libmatio.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libmatio.lai /sw/build.build/root-libmatio2-1.5.2-1/sw/lib/libmatio.la libtool: install: warning: remember to run `libtool --finish /sw/lib' test -z "/sw/include" || ../config/install-sh -c -d "/sw/build.build/root-libmatio2-1.5.2-1/sw/include" /usr/bin/install -c -m 644 matio.h '/sw/build.build/root-libmatio2-1.5.2-1/sw/include' test -z "/sw/include" || ../config/install-sh -c -d "/sw/build.build/root-libmatio2-1.5.2-1/sw/include" /usr/bin/install -c -m 644 matio_pubconf.h '/sw/build.build/root-libmatio2-1.5.2-1/sw/include' Making install in getopt make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. Making install in tools test -z "/sw/bin" || ../config/install-sh -c -d "/sw/build.build/root-libmatio2-1.5.2-1/sw/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c matdump '/sw/build.build/root-libmatio2-1.5.2-1/sw/bin' libtool: install: warning: `../src/libmatio.la' has not been installed in `/sw/lib' libtool: install: /usr/bin/install -c .libs/matdump /sw/build.build/root-libmatio2-1.5.2-1/sw/bin/matdump make[2]: Nothing to be done for `install-data-am'. Making install in test make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. Making install in documentation make[2]: Nothing to be done for `install-exec-am'. test -z "/sw/share/info" || ../config/install-sh -c -d "/sw/build.build/root-libmatio2-1.5.2-1/sw/share/info" install-info --info-dir='/sw/build.build/root-libmatio2-1.5.2-1/sw/share/info' '/sw/build.build/root-libmatio2-1.5.2-1/sw/share/info/matio.info' install-info(/sw/build.build/root-libmatio2-1.5.2-1/sw/share/info/matio.info): read < /sw/build.build/root-libmatio2-1.5.2-1/sw/share/info/matio.info: No such file or directory test -z "/sw/share/man/man3" || ../config/install-sh -c -d "/sw/build.build/root-libmatio2-1.5.2-1/sw/share/man/man3" /usr/bin/install -c -m 644 Mat_Close.3 Mat_CreateVer.3 Mat_GetFilename.3 Mat_GetLibraryVersion.3 Mat_GetVersion.3 Mat_Open.3 Mat_Rewind.3 Mat_VarAddStructField.3 Mat_VarCreate.3 Mat_VarCreateStruct.3 Mat_VarFree.3 Mat_VarGetNumberOfFields.3 Mat_VarGetStructFieldnames.3 Mat_VarGetStructs.3 Mat_VarGetStructsLinear.3 Mat_VarRead.3 Mat_VarReadInfo.3 Mat_VarReadNext.3 Mat_VarReadNextInfo.3 Mat_VarWrite.3 '/sw/build.build/root-libmatio2-1.5.2-1/sw/share/man/man3' make[2]: Nothing to be done for `install-exec-am'. test -z "/sw/lib/pkgconfig" || config/install-sh -c -d "/sw/build.build/root-libmatio2-1.5.2-1/sw/lib/pkgconfig" /usr/bin/install -c -m 644 matio.pc '/sw/build.build/root-libmatio2-1.5.2-1/sw/lib/pkgconfig' sudo -u fink-bld [ENV] sh -c /tmp/fink.Y5YIu /usr/bin/install -d -m 700 /sw/build.build/root-libmatio2-1.5.2-1/sw/share/doc/libmatio2 /bin/cp -r COPYING /sw/build.build/root-libmatio2-1.5.2-1/sw/share/doc/libmatio2/ /bin/cp -r NEWS /sw/build.build/root-libmatio2-1.5.2-1/sw/share/doc/libmatio2/ /bin/cp -r README /sw/build.build/root-libmatio2-1.5.2-1/sw/share/doc/libmatio2/ /bin/chmod -R go=u-w /sw/build.build/root-libmatio2-1.5.2-1/sw/share/doc/libmatio2 /bin/rm -f /sw/build.build/root-libmatio2-1.5.2-1/sw/info/dir /sw/build.build/root-libmatio2-1.5.2-1/sw/info/dir.old /sw/build.build/root-libmatio2-1.5.2-1/sw/share/info/dir /sw/build.build/root-libmatio2-1.5.2-1/sw/share/info/dir.old /bin/rm -rf /sw/build.build/root-libmatio2-shlibs-1.5.2-1 /bin/mkdir -p /sw/build.build/root-libmatio2-shlibs-1.5.2-1/sw /bin/mkdir -p /sw/build.build/root-libmatio2-shlibs-1.5.2-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-libmatio2-shlibs-1.5.2-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.meCYK /usr/bin/install -d -m 755 /sw/build.build/root-libmatio2-shlibs-1.5.2-1/sw/lib /bin/mv /sw/build.build/root-libmatio2-1.5.2-1/sw/lib/libmatio.2.dylib /sw/build.build/root-libmatio2-shlibs-1.5.2-1/sw/lib/ /usr/bin/install -d -m 700 /sw/build.build/root-libmatio2-shlibs-1.5.2-1/sw/share/doc/libmatio2-shlibs /bin/cp -r COPYING /sw/build.build/root-libmatio2-shlibs-1.5.2-1/sw/share/doc/libmatio2-shlibs/ /bin/cp -r NEWS /sw/build.build/root-libmatio2-shlibs-1.5.2-1/sw/share/doc/libmatio2-shlibs/ /bin/cp -r README /sw/build.build/root-libmatio2-shlibs-1.5.2-1/sw/share/doc/libmatio2-shlibs/ /bin/chmod -R go=u-w /sw/build.build/root-libmatio2-shlibs-1.5.2-1/sw/share/doc/libmatio2-shlibs /bin/rm -f /sw/build.build/root-libmatio2-shlibs-1.5.2-1/sw/info/dir /sw/build.build/root-libmatio2-shlibs-1.5.2-1/sw/info/dir.old /sw/build.build/root-libmatio2-shlibs-1.5.2-1/sw/share/info/dir /sw/build.build/root-libmatio2-shlibs-1.5.2-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-libmatio2-1.5.2-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `libmatio2' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/libmatio2_1.5.2-1_darwin-x86_64.deb'. Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-libmatio2-shlibs-1.5.2-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `libmatio2-shlibs' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/libmatio2-shlibs_1.5.2-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-libmatio2-1.5.2-1 (Reading database ... 5190 files and directories currently installed.) Removing fink-buildlock-libmatio2-1.5.2-1 ...