printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild madeline2 2>&1 The package 'madeline2' will be built without being installed. Reading build dependency for madeline2-2.0.99-1... Reading dependency for madeline2-2.0.99-1... Reading build conflict for madeline2-2.0.99-1... The package 'bzip2-dev' will be installed. Reading dependency for bzip2-dev-1.0.6-1... Reading runtime dependency for bzip2-dev-1.0.6-1... The package 'cmake' will be installed. Reading dependency for cmake-2.8.12-2... Reading runtime dependency for cmake-2.8.12-2... The package 'gettext-tools' will be installed. Reading dependency for gettext-tools-0.18.3.1-1... Reading runtime dependency for gettext-tools-0.18.3.1-1... The package 'libcurl4' will be installed. Reading dependency for libcurl4-7.37.1-1+10.8... Reading runtime dependency for libcurl4-7.37.1-1+10.8... The package 'libgettext8-dev' will be installed. Reading dependency for libgettext8-dev-0.18.3.1-2... Reading runtime dependency for libgettext8-dev-0.18.3.1-2... The package 'libxml2' will be installed. Reading dependency for libxml2-2.9.1-3... Reading runtime dependency for libxml2-2.9.1-3... The package 'pkgconfig' will be installed. Reading dependency for pkgconfig-0.28-1... Reading runtime dependency for pkgconfig-0.28-1... The package 'system-openssl-dev' will be installed. Reading dependency for system-openssl-dev-0.9.8-6... Reading runtime dependency for system-openssl-dev-0.9.8-6... The package 'libcurl4-shlibs' will be installed. Reading dependency for libcurl4-shlibs-7.37.1-1+10.8... Reading runtime dependency for libcurl4-shlibs-7.37.1-1+10.8... The package 'libxml2-shlibs' will be installed. Reading dependency for libxml2-shlibs-2.9.1-3... Reading runtime dependency for libxml2-shlibs-2.9.1-3... The package 'libidn-shlibs' will be installed. Reading dependency for libidn-shlibs-1.22-6... Reading runtime dependency for libidn-shlibs-1.22-6... The package 'expat1-shlibs' will be installed. Reading dependency for expat1-shlibs-2.1.0-1... Reading runtime dependency for expat1-shlibs-2.1.0-1... The package 'gettext-bin' will be installed. Reading dependency for gettext-bin-0.18.3.1-2... Reading runtime dependency for gettext-bin-0.18.3.1-2... The package 'libxml2-bin' will be installed. Reading dependency for libxml2-bin-2.9.1-3... Reading runtime dependency for libxml2-bin-2.9.1-3... The package 'glib2-shlibs' will be installed. Reading dependency for glib2-shlibs-2.22.4-8... Reading runtime dependency for glib2-shlibs-2.22.4-8... The package 'librtmp-shlibs' will be installed. Reading dependency for librtmp-shlibs-2.3-4... Reading runtime dependency for librtmp-shlibs-2.3-4... The package 'libssh2.1-shlibs' will be installed. Reading dependency for libssh2.1-shlibs-1.4.3-1... Reading runtime dependency for libssh2.1-shlibs-1.4.3-1... The package 'liblzma5-shlibs' will be installed. Reading dependency for liblzma5-shlibs-5.0.5-2... Reading runtime dependency for liblzma5-shlibs-5.0.5-2... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'xdg-base' will be installed. Reading dependency for xdg-base-0.8-2... Reading runtime dependency for xdg-base-0.8-2... The package 'openssl100-shlibs' will be installed. Reading dependency for openssl100-shlibs-1.0.1h-1... Reading runtime dependency for openssl100-shlibs-1.0.1h-1... The following package will be rebuilt: madeline2 The following 21 additional packages will be installed: bzip2-dev cmake expat1-shlibs gettext-bin gettext-tools glib2-shlibs libcurl4 libcurl4-shlibs libgettext8-dev libidn-shlibs liblzma5-shlibs librtmp-shlibs libssh2.1-shlibs libxml2 libxml2-bin libxml2-shlibs openssl100-shlibs pkgconfig readline6-shlibs system-openssl-dev xdg-base Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/madeline2-2.0.99.tar.bz2 % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 1451k 0 1202 0 0 4758 0 0:05:12 --:--:-- 0:05:12 4750 31 1451k 31 450k 0 0 392k 0 0:00:03 0:00:01 0:00:02 392k 56 1451k 56 826k 0 0 313k 0 0:00:04 0:00:02 0:00:02 313k 77 1451k 77 1129k 0 0 355k 0 0:00:04 0:00:03 0:00:01 355k 100 1451k 100 1451k 0 0 388k 0 0:00:03 0:00:03 --:--:-- 388k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/bzip2-dev_1.0.6-1_darwin-x86_64.deb Selecting previously deselected package bzip2-dev. (Reading database ... 4740 files and directories currently installed.) Unpacking bzip2-dev (from .../bzip2-dev_1.0.6-1_darwin-x86_64.deb) ... Setting up bzip2-dev (1.0.6-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb Selecting previously deselected package expat1-shlibs. (Reading database ... 4747 files and directories currently installed.) Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ... Setting up expat1-shlibs (2.1.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/gettext-tools_0.18.3.1-1_darwin-x86_64.deb Selecting previously deselected package gettext-tools. (Reading database ... 4752 files and directories currently installed.) Unpacking gettext-tools (from .../gettext-tools_0.18.3.1-1_darwin-x86_64.deb) ... Setting up gettext-tools (0.18.3.1-1) ... * gettext: (gettext). GNU gettext utilities. install-info(/sw/share/info/gettext.info): creating new section `GNU Gettext Utilities' Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/libgettext8-dev_0.18.3.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/base/gettext-bin_0.18.3.1-2_darwin-x86_64.deb Selecting previously deselected package libgettext8-dev. (Reading database ... 6599 files and directories currently installed.) Unpacking libgettext8-dev (from .../libgettext8-dev_0.18.3.1-2_darwin-x86_64.deb) ... Selecting previously deselected package gettext-bin. Unpacking gettext-bin (from .../gettext-bin_0.18.3.1-2_darwin-x86_64.deb) ... Setting up gettext-bin (0.18.3.1-2) ... Setting up libgettext8-dev (0.18.3.1-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libidn-shlibs_1.22-6_darwin-x86_64.deb Selecting previously deselected package libidn-shlibs. (Reading database ... 6684 files and directories currently installed.) Unpacking libidn-shlibs (from .../libidn-shlibs_1.22-6_darwin-x86_64.deb) ... Setting up libidn-shlibs (1.22-6) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/utils/liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb Selecting previously deselected package liblzma5-shlibs. (Reading database ... 6685 files and directories currently installed.) Unpacking liblzma5-shlibs (from .../liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb) ... Setting up liblzma5-shlibs (5.0.5-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb Selecting previously deselected package openssl100-shlibs. (Reading database ... 6696 files and directories currently installed.) Unpacking openssl100-shlibs (from .../openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb) ... Setting up openssl100-shlibs (1.0.1h-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb Selecting previously deselected package readline6-shlibs. (Reading database ... 6717 files and directories currently installed.) Unpacking readline6-shlibs (from .../readline6-shlibs_6.3.6-1_darwin-x86_64.deb) ... Setting up readline6-shlibs (6.3.6-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/system-openssl-dev_0.9.8-6_darwin-x86_64.deb Selecting previously deselected package system-openssl-dev. (Reading database ... 6728 files and directories currently installed.) Unpacking system-openssl-dev (from .../system-openssl-dev_0.9.8-6_darwin-x86_64.deb) ... Setting up system-openssl-dev (0.9.8-6) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/xdg-base_0.8-2_darwin-x86_64.deb Selecting previously deselected package xdg-base. (Reading database ... 6736 files and directories currently installed.) Unpacking xdg-base (from .../xdg-base_0.8-2_darwin-x86_64.deb) ... Setting up xdg-base (0.8-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cmake_2.8.12-2_darwin-x86_64.deb Selecting previously deselected package cmake. (Reading database ... 6738 files and directories currently installed.) Unpacking cmake (from .../cmake_2.8.12-2_darwin-x86_64.deb) ... Setting up cmake (2.8.12-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/glib2-shlibs_2.22.4-8_darwin-x86_64.deb Selecting previously deselected package glib2-shlibs. (Reading database ... 7467 files and directories currently installed.) Unpacking glib2-shlibs (from .../glib2-shlibs_2.22.4-8_darwin-x86_64.deb) ... Setting up glib2-shlibs (2.22.4-8) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/net/librtmp-shlibs_2.3-4_darwin-x86_64.deb Selecting previously deselected package librtmp-shlibs. (Reading database ... 7684 files and directories currently installed.) Unpacking librtmp-shlibs (from .../librtmp-shlibs_2.3-4_darwin-x86_64.deb) ... Setting up librtmp-shlibs (2.3-4) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/net/libssh2.1-shlibs_1.4.3-1_darwin-x86_64.deb Selecting previously deselected package libssh2.1-shlibs. (Reading database ... 7689 files and directories currently installed.) Unpacking libssh2.1-shlibs (from .../libssh2.1-shlibs_1.4.3-1_darwin-x86_64.deb) ... Setting up libssh2.1-shlibs (1.4.3-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/libxml2_2.9.1-3_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libxml2-shlibs_2.9.1-3_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libxml2-bin_2.9.1-3_darwin-x86_64.deb Selecting previously deselected package libxml2. (Reading database ... 7697 files and directories currently installed.) Unpacking libxml2 (from .../libxml2_2.9.1-3_darwin-x86_64.deb) ... Selecting previously deselected package libxml2-shlibs. Unpacking libxml2-shlibs (from .../libxml2-shlibs_2.9.1-3_darwin-x86_64.deb) ... Selecting previously deselected package libxml2-bin. Unpacking libxml2-bin (from .../libxml2-bin_2.9.1-3_darwin-x86_64.deb) ... Setting up libxml2-shlibs (2.9.1-3) ... Setting up libxml2-bin (2.9.1-3) ... Setting up libxml2 (2.9.1-3) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/pkgconfig_0.28-1_darwin-x86_64.deb Selecting previously deselected package pkgconfig. (Reading database ... 8065 files and directories currently installed.) Unpacking pkgconfig (from .../pkgconfig_0.28-1_darwin-x86_64.deb) ... Setting up pkgconfig (0.28-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/libcurl4_7.37.1-1+10.8_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/net/libcurl4-shlibs_7.37.1-1+10.8_darwin-x86_64.deb Selecting previously deselected package libcurl4. (Reading database ... 8078 files and directories currently installed.) Unpacking libcurl4 (from .../libcurl4_7.37.1-1+10.8_darwin-x86_64.deb) ... Selecting previously deselected package libcurl4-shlibs. Unpacking libcurl4-shlibs (from .../libcurl4-shlibs_7.37.1-1+10.8_darwin-x86_64.deb) ... Setting up libcurl4-shlibs (7.37.1-1+10.8) ... Setting up libcurl4 (7.37.1-1+10.8) ... Clearing dependency_libs of .la files being installed Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-madeline2-2.0.99-1 /sw/build.build dpkg-deb: building package `fink-buildlock-madeline2-2.0.99-1' in `/sw/build.build/fink-buildlock-madeline2-2.0.99-1_2014.08.05-07.06.49_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-madeline2-2.0.99-1_2014.08.05-07.06.49_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-madeline2-2.0.99-1. (Reading database ... 8429 files and directories currently installed.) Unpacking fink-buildlock-madeline2-2.0.99-1 (from .../fink-buildlock-madeline2-2.0.99-1_2014.08.05-07.06.49_darwin-x86_64.deb) ... Setting up fink-buildlock-madeline2-2.0.99-1 (2014.08.05-07.06.49) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.WxTwR env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/madeline2-2.0.99.tar.bz2 madeline2-2.0.99/ madeline2-2.0.99/3rdParty/ madeline2-2.0.99/3rdParty/bzip2 madeline2-2.0.99/3rdParty/bzip2-1.0.1/ madeline2-2.0.99/3rdParty/bzip2-1.0.1/blocksort.c madeline2-2.0.99/3rdParty/bzip2-1.0.1/bzip2.1 madeline2-2.0.99/3rdParty/bzip2-1.0.1/bzip2.1.preformatted madeline2-2.0.99/3rdParty/bzip2-1.0.1/bzip2.c madeline2-2.0.99/3rdParty/bzip2-1.0.1/bzip2.txt madeline2-2.0.99/3rdParty/bzip2-1.0.1/bzip2recover madeline2-2.0.99/3rdParty/bzip2-1.0.1/bzip2recover.c madeline2-2.0.99/3rdParty/bzip2-1.0.1/bzlib.c madeline2-2.0.99/3rdParty/bzip2-1.0.1/bzlib.h madeline2-2.0.99/3rdParty/bzip2-1.0.1/bzlib_private.h madeline2-2.0.99/3rdParty/bzip2-1.0.1/CHANGES madeline2-2.0.99/3rdParty/bzip2-1.0.1/CMakeLists.txt madeline2-2.0.99/3rdParty/bzip2-1.0.1/compress.c madeline2-2.0.99/3rdParty/bzip2-1.0.1/crctable.c madeline2-2.0.99/3rdParty/bzip2-1.0.1/decompress.c madeline2-2.0.99/3rdParty/bzip2-1.0.1/dlltest.c madeline2-2.0.99/3rdParty/bzip2-1.0.1/dlltest.dsp madeline2-2.0.99/3rdParty/bzip2-1.0.1/huffman.c madeline2-2.0.99/3rdParty/bzip2-1.0.1/libbz2.a madeline2-2.0.99/3rdParty/bzip2-1.0.1/libbz2.def madeline2-2.0.99/3rdParty/bzip2-1.0.1/libbz2.dsp madeline2-2.0.99/3rdParty/bzip2-1.0.1/libbzip2lib.a madeline2-2.0.99/3rdParty/bzip2-1.0.1/LICENSE madeline2-2.0.99/3rdParty/bzip2-1.0.1/Makefile-libbz2_so madeline2-2.0.99/3rdParty/bzip2-1.0.1/makefile.msc madeline2-2.0.99/3rdParty/bzip2-1.0.1/Makefile.original madeline2-2.0.99/3rdParty/bzip2-1.0.1/manual.ps madeline2-2.0.99/3rdParty/bzip2-1.0.1/manual.texi madeline2-2.0.99/3rdParty/bzip2-1.0.1/manual_1.html madeline2-2.0.99/3rdParty/bzip2-1.0.1/manual_2.html madeline2-2.0.99/3rdParty/bzip2-1.0.1/manual_3.html madeline2-2.0.99/3rdParty/bzip2-1.0.1/manual_4.html madeline2-2.0.99/3rdParty/bzip2-1.0.1/manual_toc.html madeline2-2.0.99/3rdParty/bzip2-1.0.1/randtable.c madeline2-2.0.99/3rdParty/bzip2-1.0.1/README madeline2-2.0.99/3rdParty/bzip2-1.0.1/README.COMPILATION.PROBLEMS madeline2-2.0.99/3rdParty/bzip2-1.0.1/sample1.bz2 madeline2-2.0.99/3rdParty/bzip2-1.0.1/sample1.rb2 madeline2-2.0.99/3rdParty/bzip2-1.0.1/sample1.ref madeline2-2.0.99/3rdParty/bzip2-1.0.1/sample1.tst madeline2-2.0.99/3rdParty/bzip2-1.0.1/sample2.bz2 madeline2-2.0.99/3rdParty/bzip2-1.0.1/sample2.rb2 madeline2-2.0.99/3rdParty/bzip2-1.0.1/sample2.ref madeline2-2.0.99/3rdParty/bzip2-1.0.1/sample2.tst madeline2-2.0.99/3rdParty/bzip2-1.0.1/sample3.bz2 madeline2-2.0.99/3rdParty/bzip2-1.0.1/sample3.rb2 madeline2-2.0.99/3rdParty/bzip2-1.0.1/sample3.ref madeline2-2.0.99/3rdParty/bzip2-1.0.1/sample3.tst madeline2-2.0.99/3rdParty/bzip2-1.0.1/spewG.c madeline2-2.0.99/3rdParty/bzip2-1.0.1/unzcrash.c madeline2-2.0.99/3rdParty/bzip2-1.0.1/words0 madeline2-2.0.99/3rdParty/bzip2-1.0.1/words1 madeline2-2.0.99/3rdParty/bzip2-1.0.1/words2 madeline2-2.0.99/3rdParty/bzip2-1.0.1/words3 madeline2-2.0.99/3rdParty/bzip2-1.0.1/Y2K_INFO madeline2-2.0.99/3rdParty/CMakeLists.txt madeline2-2.0.99/3rdParty/unzip madeline2-2.0.99/3rdParty/zlib-1.1.4-minizip-0.15/ madeline2-2.0.99/3rdParty/zlib-1.1.4-minizip-0.15/CMakeLists.txt madeline2-2.0.99/3rdParty/zlib-1.1.4-minizip-0.15/unzip.c madeline2-2.0.99/3rdParty/zlib-1.1.4-minizip-0.15/unzip.h madeline2-2.0.99/bin/ madeline2-2.0.99/cmake/ madeline2-2.0.99/cmake/modules/ madeline2-2.0.99/cmake/modules/FindGetText.cmake madeline2-2.0.99/cmake/modules/FindLibcurl.cmake madeline2-2.0.99/cmake/modules/FindLibintl.cmake madeline2-2.0.99/cmake/modules/FindLibXml2.cmake madeline2-2.0.99/cmake/modules/FindMySQL++.cmake madeline2-2.0.99/cmake/modules/FindMySQL.cmake madeline2-2.0.99/cmake/modules/FindPackageHandleStandardArgs.cmake madeline2-2.0.99/CMakeLists.txt madeline2-2.0.99/configure madeline2-2.0.99/documentation/ madeline2-2.0.99/documentation/CodingConventions.txt madeline2-2.0.99/documentation/HowToCompile.txt madeline2-2.0.99/documentation/SeeWebDocumentation.txt madeline2-2.0.99/doxygen/ madeline2-2.0.99/doxygen/AUTHORS madeline2-2.0.99/doxygen/CMakeLists.txt madeline2-2.0.99/doxygen/Doxyfile.in madeline2-2.0.99/doxygen/html/ madeline2-2.0.99/doxygen/html/CMakeLists.txt madeline2-2.0.99/libs/ madeline2-2.0.99/po/ madeline2-2.0.99/po/CMakeLists.txt madeline2-2.0.99/po/fr.po madeline2-2.0.99/po/madeline2.pot madeline2-2.0.99/po/th.po madeline2-2.0.99/po/zh_CN.po madeline2-2.0.99/po/zh_TW.po madeline2-2.0.99/src/ madeline2-2.0.99/src/Affected.cpp madeline2-2.0.99/src/Affected.h madeline2-2.0.99/src/AssociativeArray.cpp madeline2-2.0.99/src/AssociativeArray.h madeline2-2.0.99/src/Boolean.cpp madeline2-2.0.99/src/Boolean.h madeline2-2.0.99/src/BufferSizes.h madeline2-2.0.99/src/Carrier.cpp madeline2-2.0.99/src/Carrier.h madeline2-2.0.99/src/CLP.cpp madeline2-2.0.99/src/CLP.h madeline2-2.0.99/src/CMakeLists.txt madeline2-2.0.99/src/ColorSeries.cpp madeline2-2.0.99/src/ColorSeries.h madeline2-2.0.99/src/ColorSeriesStack.cpp madeline2-2.0.99/src/ColorSeriesStack.h madeline2-2.0.99/src/ColumnClassifier.cpp madeline2-2.0.99/src/ColumnClassifier.h madeline2-2.0.99/src/ColumnOffset.h madeline2-2.0.99/src/Compressor.cpp madeline2-2.0.99/src/Compressor.h madeline2-2.0.99/src/config.h.cmake madeline2-2.0.99/src/Consultand.cpp madeline2-2.0.99/src/Consultand.h madeline2-2.0.99/src/Data.cpp madeline2-2.0.99/src/Data.h madeline2-2.0.99/src/Database.cpp madeline2-2.0.99/src/Database.h madeline2-2.0.99/src/DataColumn.cpp madeline2-2.0.99/src/DataColumn.h madeline2-2.0.99/src/DataTable.cpp madeline2-2.0.99/src/DataTable.h madeline2-2.0.99/src/DataTypes.h madeline2-2.0.99/src/Date.cpp madeline2-2.0.99/src/Date.h madeline2-2.0.99/src/Debug.cpp madeline2-2.0.99/src/Debug.h madeline2-2.0.99/src/DelimitedTableParser.cpp madeline2-2.0.99/src/DelimitedTableParser.h madeline2-2.0.99/src/DescentTree.cpp madeline2-2.0.99/src/DescentTree.h madeline2-2.0.99/src/DigitConverter.cpp madeline2-2.0.99/src/DigitConverter.h madeline2-2.0.99/src/DrawingCanvas.cpp madeline2-2.0.99/src/DrawingCanvas.h madeline2-2.0.99/src/DrawingColor.cpp madeline2-2.0.99/src/DrawingColor.h madeline2-2.0.99/src/DrawingLabelManager.cpp madeline2-2.0.99/src/DrawingLabelManager.h madeline2-2.0.99/src/DrawingMetrics.cpp madeline2-2.0.99/src/DrawingMetrics.h madeline2-2.0.99/src/Exception.cpp madeline2-2.0.99/src/Exception.h madeline2-2.0.99/src/FieldLabels.cpp madeline2-2.0.99/src/FieldLabels.h madeline2-2.0.99/src/FileTypeClassifier.cpp madeline2-2.0.99/src/FileTypeClassifier.h madeline2-2.0.99/src/Gender.cpp madeline2-2.0.99/src/Gender.h madeline2-2.0.99/src/Genotype.cpp madeline2-2.0.99/src/Genotype.h madeline2-2.0.99/src/Grid.h madeline2-2.0.99/src/Haplotype.cpp madeline2-2.0.99/src/Haplotype.h madeline2-2.0.99/src/HexavigesimalConverter.cpp madeline2-2.0.99/src/HexavigesimalConverter.h madeline2-2.0.99/src/IconLegend.h madeline2-2.0.99/src/Individual.cpp madeline2-2.0.99/src/Individual.h madeline2-2.0.99/src/Infertility.cpp madeline2-2.0.99/src/Infertility.h madeline2-2.0.99/src/LabelLegend.h madeline2-2.0.99/src/labels.txt madeline2-2.0.99/src/LabelSet.cpp madeline2-2.0.99/src/LabelSet.h madeline2-2.0.99/src/LASiWrapper.cpp madeline2-2.0.99/src/LASiWrapper.h madeline2-2.0.99/src/Legend.h madeline2-2.0.99/src/LineInformation.h madeline2-2.0.99/src/LivingDead.cpp madeline2-2.0.99/src/LivingDead.h madeline2-2.0.99/src/madeline.css madeline2-2.0.99/src/madeline.h madeline2-2.0.99/src/MadelineTable.cpp madeline2-2.0.99/src/MadelineTable.h madeline2-2.0.99/src/main.cpp madeline2-2.0.99/src/Manual-Makefile madeline2-2.0.99/src/Message.cpp madeline2-2.0.99/src/Message.h madeline2-2.0.99/src/Network.cpp madeline2-2.0.99/src/Network.h madeline2-2.0.99/src/NuclearFamily.cpp madeline2-2.0.99/src/NuclearFamily.h madeline2-2.0.99/src/Number.cpp madeline2-2.0.99/src/Number.h madeline2-2.0.99/src/Parser.cpp madeline2-2.0.99/src/Parser.h madeline2-2.0.99/src/Pedigree.cpp madeline2-2.0.99/src/Pedigree.h madeline2-2.0.99/src/PedigreeSet.cpp madeline2-2.0.99/src/PedigreeSet.h madeline2-2.0.99/src/Proband.cpp madeline2-2.0.99/src/Proband.h madeline2-2.0.99/src/RandomGenerator.cpp madeline2-2.0.99/src/RandomGenerator.h madeline2-2.0.99/src/RandomSampleSizes.h madeline2-2.0.99/src/RelationshipEnded.cpp madeline2-2.0.99/src/RelationshipEnded.h madeline2-2.0.99/src/Sampled.cpp madeline2-2.0.99/src/Sampled.h madeline2-2.0.99/src/Scalar.cpp madeline2-2.0.99/src/Scalar.h madeline2-2.0.99/src/ScriptCodes.h madeline2-2.0.99/src/Sterility.cpp madeline2-2.0.99/src/Sterility.h madeline2-2.0.99/src/String.cpp madeline2-2.0.99/src/String.h madeline2-2.0.99/src/SVG.cpp madeline2-2.0.99/src/SVG.h madeline2-2.0.99/src/TableParser.h madeline2-2.0.99/src/testAffected.c madeline2-2.0.99/src/testAssociativeArray.c madeline2-2.0.99/src/testBoolean.c madeline2-2.0.99/src/testColorSeries.cpp madeline2-2.0.99/src/testColumnClassifier.c madeline2-2.0.99/src/testConsultand.c madeline2-2.0.99/src/testDate.c madeline2-2.0.99/src/testDigitConverter.c madeline2-2.0.99/src/testDrawingColor.cpp madeline2-2.0.99/src/testDrawingLabelManager.c madeline2-2.0.99/src/testDrawingMetrics.c madeline2-2.0.99/src/testGender.c madeline2-2.0.99/src/testGenotype.c madeline2-2.0.99/src/testHaplotype.c madeline2-2.0.99/src/testLivingDead.c madeline2-2.0.99/src/testMadelineTable.c madeline2-2.0.99/src/testNumber.c madeline2-2.0.99/src/testParser.c madeline2-2.0.99/src/testPedigreeSet.c madeline2-2.0.99/src/testProband.c madeline2-2.0.99/src/testScalar.c madeline2-2.0.99/src/testString.c madeline2-2.0.99/src/testTwin.c madeline2-2.0.99/src/testUnicodeScript.c madeline2-2.0.99/src/testUniqueList.cpp madeline2-2.0.99/src/testUTF16AndUTF32Conversion.cpp madeline2-2.0.99/src/testWarning.c madeline2-2.0.99/src/Twin.cpp madeline2-2.0.99/src/Twin.h madeline2-2.0.99/src/UnicodeScript.cpp madeline2-2.0.99/src/UnicodeScript.h madeline2-2.0.99/src/UniqueList.cpp madeline2-2.0.99/src/UniqueList.h madeline2-2.0.99/src/Utf8String.cpp madeline2-2.0.99/src/Utf8String.h madeline2-2.0.99/src/utility.h madeline2-2.0.99/src/Variable.h madeline2-2.0.99/src/Version.h madeline2-2.0.99/src/Warning.cpp madeline2-2.0.99/src/Warning.h madeline2-2.0.99/src/Width.h madeline2-2.0.99/src/XMLTableParser.cpp madeline2-2.0.99/src/XMLTableParser.h madeline2-2.0.99/src/XMLTagManager.cpp madeline2-2.0.99/src/XMLTagManager.h madeline2-2.0.99/testdata/ madeline2-2.0.99/testdata/css/ madeline2-2.0.99/testdata/css/main.css madeline2-2.0.99/testdata/css/main.css.original madeline2-2.0.99/testdata/images/ madeline2-2.0.99/testdata/images/cs_001.png madeline2-2.0.99/testdata/images/cs_002.png madeline2-2.0.99/testdata/images/cs_003.png madeline2-2.0.99/testdata/images/cs_004.png madeline2-2.0.99/testdata/images/cs_005.png madeline2-2.0.99/testdata/images/cs_006.png madeline2-2.0.99/testdata/images/cs_007.png madeline2-2.0.99/testdata/images/cs_008.png madeline2-2.0.99/testdata/images/cs_009.png madeline2-2.0.99/testdata/images/cs_010.png madeline2-2.0.99/testdata/images/cs_ms_001.png madeline2-2.0.99/testdata/images/cs_ms_002.png madeline2-2.0.99/testdata/images/cs_ms_003.png madeline2-2.0.99/testdata/images/cs_ms_004.png madeline2-2.0.99/testdata/images/cx_001.png madeline2-2.0.99/testdata/images/cx_002.png madeline2-2.0.99/testdata/images/dt_001.png madeline2-2.0.99/testdata/images/dt_002.png madeline2-2.0.99/testdata/images/dt_003.png madeline2-2.0.99/testdata/images/ic_002.png madeline2-2.0.99/testdata/images/ic_004.png madeline2-2.0.99/testdata/images/ic_005.png madeline2-2.0.99/testdata/images/ms_001.png madeline2-2.0.99/testdata/images/ms_002.png madeline2-2.0.99/testdata/images/ms_003.png madeline2-2.0.99/testdata/images/ms_004.png madeline2-2.0.99/testdata/images/si_001.png madeline2-2.0.99/testdata/images/si_002.png madeline2-2.0.99/testdata/images/si_003.png madeline2-2.0.99/testdata/images/si_004.png madeline2-2.0.99/testdata/images/si_005.png madeline2-2.0.99/testdata/images/si_006.png madeline2-2.0.99/testdata/images/tw_001.png madeline2-2.0.99/testdata/images/tw_002.png madeline2-2.0.99/testdata/images/tw_003.png madeline2-2.0.99/testdata/images/tw_004.png madeline2-2.0.99/testdata/index.html madeline2-2.0.99/testdata/input/ madeline2-2.0.99/testdata/input/cs_001.data madeline2-2.0.99/testdata/input/cs_002.data madeline2-2.0.99/testdata/input/cs_003.data madeline2-2.0.99/testdata/input/cs_004.data madeline2-2.0.99/testdata/input/cs_005.data madeline2-2.0.99/testdata/input/cs_006.data madeline2-2.0.99/testdata/input/cs_007.data madeline2-2.0.99/testdata/input/cs_008.data madeline2-2.0.99/testdata/input/cs_009.data madeline2-2.0.99/testdata/input/cs_010.data madeline2-2.0.99/testdata/input/cs_ms_001.data madeline2-2.0.99/testdata/input/cs_ms_002.data madeline2-2.0.99/testdata/input/cs_ms_003.data madeline2-2.0.99/testdata/input/cs_ms_004.data madeline2-2.0.99/testdata/input/cx_001.data madeline2-2.0.99/testdata/input/cx_002.data madeline2-2.0.99/testdata/input/dt_001.data madeline2-2.0.99/testdata/input/dt_002.data madeline2-2.0.99/testdata/input/dt_003.data madeline2-2.0.99/testdata/input/ic_002.data madeline2-2.0.99/testdata/input/ic_004.data madeline2-2.0.99/testdata/input/ic_005.data madeline2-2.0.99/testdata/input/ms_001.data madeline2-2.0.99/testdata/input/ms_002.data madeline2-2.0.99/testdata/input/ms_003.data madeline2-2.0.99/testdata/input/ms_004.data madeline2-2.0.99/testdata/input/script.sh madeline2-2.0.99/testdata/input/si_001.data madeline2-2.0.99/testdata/input/si_002.data madeline2-2.0.99/testdata/input/si_003.data madeline2-2.0.99/testdata/input/si_004.data madeline2-2.0.99/testdata/input/si_005.labels madeline2-2.0.99/testdata/input/si_005.ods madeline2-2.0.99/testdata/input/si_006.data madeline2-2.0.99/testdata/input/tw_001.data madeline2-2.0.99/testdata/input/tw_002.data madeline2-2.0.99/testdata/input/tw_003.data madeline2-2.0.99/testdata/input/tw_004.data madeline2-2.0.99/testdata/javascript/ madeline2-2.0.99/testdata/output/ madeline2-2.0.99/testdata/output/cs_001ped.xml madeline2-2.0.99/testdata/output/cs_002ped.xml madeline2-2.0.99/testdata/output/cs_003ped.xml madeline2-2.0.99/testdata/output/cs_004ped.xml madeline2-2.0.99/testdata/output/cs_005ped.xml madeline2-2.0.99/testdata/output/cs_006ped.xml madeline2-2.0.99/testdata/output/cs_007ped.xml madeline2-2.0.99/testdata/output/cs_008ped.xml madeline2-2.0.99/testdata/output/cs_009ped.xml madeline2-2.0.99/testdata/output/cs_010ped.xml madeline2-2.0.99/testdata/output/cs_ms_001ped.xml madeline2-2.0.99/testdata/output/cs_ms_002ped.xml madeline2-2.0.99/testdata/output/cs_ms_003ped.xml madeline2-2.0.99/testdata/output/cs_ms_004ped.xml madeline2-2.0.99/testdata/output/cx_001ped.xml madeline2-2.0.99/testdata/output/cx_002ped.xml madeline2-2.0.99/testdata/output/dt_001ped.xml madeline2-2.0.99/testdata/output/dt_002ped.xml madeline2-2.0.99/testdata/output/dt_003ped.xml madeline2-2.0.99/testdata/output/ic_002ped.xml madeline2-2.0.99/testdata/output/ic_004ped.xml madeline2-2.0.99/testdata/output/ic_005ped.xml madeline2-2.0.99/testdata/output/ms_001ped.xml madeline2-2.0.99/testdata/output/ms_002ped.xml madeline2-2.0.99/testdata/output/ms_003ped.xml madeline2-2.0.99/testdata/output/ms_004ped.xml madeline2-2.0.99/testdata/output/si_001ped.xml madeline2-2.0.99/testdata/output/si_002ped.xml madeline2-2.0.99/testdata/output/si_003ped.xml madeline2-2.0.99/testdata/output/si_004ped.xml madeline2-2.0.99/testdata/output/si_005ped.xml madeline2-2.0.99/testdata/output/si_006ped.xml madeline2-2.0.99/testdata/output/tw_001ped.xml madeline2-2.0.99/testdata/output/tw_002ped.xml madeline2-2.0.99/testdata/output/tw_003ped.xml madeline2-2.0.99/testdata/output/tw_004ped.xml sudo -u fink-bld [ENV] sh -c /tmp/fink.5vmiL cmake -DCMAKE_PREFIX_PATH:PATH=/sw/lib/system-openssl -DCMAKE_CXX_FLAGS:STRING=-I/sw/lib/system-openssl/include -DCMAKE_SYSTEM_PREFIX_PATH:PATH=/sw -DCMAKE_INSTALL_PREFIX:PATH=/sw . -- The C compiler identification is Clang 5.1.0 -- The CXX compiler identification is Clang 5.1.0 -- Check for working C compiler: /sw/var/lib/fink/path-prefix-clang/cc -- Check for working C compiler: /sw/var/lib/fink/path-prefix-clang/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /sw/var/lib/fink/path-prefix-clang/c++ -- Check for working CXX compiler: /sw/var/lib/fink/path-prefix-clang/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Found BZip2: /sw/lib/libbz2.dylib (found version "1.0.6") -- Looking for BZ2_bzCompressInit in /sw/lib/libbz2.dylib -- Looking for BZ2_bzCompressInit in /sw/lib/libbz2.dylib - found -- WARNING: you are using the obsolete 'PKGCONFIG' macro, use FindPkgConfig -- include dir is /sw/include -- Found LibXml2: /sw/lib/libxml2.dylib -- Looking for dgettext -- Looking for dgettext - not found -- Found Libintl: /sw/include -- Looking for curl_easy_setopt -- Looking for curl_easy_setopt - not found -- Found Libcurl: /sw/include -- Found ZLIB: /usr/lib/libz.dylib (found version "1.2.5") -- Looking for include file malloc.h -- Looking for include file malloc.h - not found -- Looking for include files sys/param.h, sys/mount.h -- Looking for include files sys/param.h, sys/mount.h - found -- === NOTA BENE: === Madeline will be installed in /sw -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Unable to locate DOxygen : API Documentation will not be built! -- Configuring done -- Generating done -- Build files have been written to: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99 make Scanning dependencies of target translations Scanning dependencies of target unzip [ 1%] [ 3%] [ 4%] [ 6%] [ 8%] Generating fr.gmo Building C object 3rdParty/unzip/CMakeFiles/unzip.dir/unzip.o Generating zh_CN.gmo Generating th.gmo Generating zh_TW.gmo [ 8%] Built target translations /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/3rdParty/unzip/unzip.c:541:3: warning: add explicit braces to avoid dangling else [-Wdangling-else] else if (uMagic!=0x02014b50) ^ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/3rdParty/unzip/unzip.c:621:4: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/3rdParty/unzip/unzip.c:646:4: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/3rdParty/unzip/unzip.c:830:3: warning: add explicit braces to avoid dangling else [-Wdangling-else] else if (uMagic!=0x04034b50) ^ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/3rdParty/unzip/unzip.c:1014:43: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((pfile_in_zip_read_info->read_buffer == NULL)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/3rdParty/unzip/unzip.c:1014:43: note: remove extraneous parentheses around the comparison to silence this warning if ((pfile_in_zip_read_info->read_buffer == NULL)) ~ ^ ~ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/3rdParty/unzip/unzip.c:1014:43: note: use '=' to turn this equality comparison into an assignment if ((pfile_in_zip_read_info->read_buffer == NULL)) ^~ = 5 warnings generated. Linking C static library libunzip.a [ 8%] Built target unzip Scanning dependencies of target madeline2 [ 9%] [ 11%] [ 13%] [ 14%] [ 16%] [ 18%] Building CXX object src/CMakeFiles/madeline2.dir/Affected.o Building CXX object src/CMakeFiles/madeline2.dir/Boolean.o [ 19%] Building CXX object src/CMakeFiles/madeline2.dir/Carrier.o [ 21%] Building CXX object src/CMakeFiles/madeline2.dir/CLP.o Building CXX object src/CMakeFiles/madeline2.dir/ColorSeries.o Building CXX object src/CMakeFiles/madeline2.dir/ColorSeriesStack.o Building CXX object src/CMakeFiles/madeline2.dir/ColumnClassifier.o Building CXX object src/CMakeFiles/madeline2.dir/Compressor.o [ 27%] [ 27%] [ 27%] [ 27%] Building CXX object src/CMakeFiles/madeline2.dir/DataTable.o Building CXX object src/CMakeFiles/madeline2.dir/Consultand.o Building CXX object src/CMakeFiles/madeline2.dir/Data.o Building CXX object src/CMakeFiles/madeline2.dir/DataColumn.o [ 29%] [ 31%] [ 32%] Building CXX object src/CMakeFiles/madeline2.dir/Date.o Building CXX object src/CMakeFiles/madeline2.dir/Debug.o Building CXX object src/CMakeFiles/madeline2.dir/DelimitedTableParser.o [ 34%] Building CXX object src/CMakeFiles/madeline2.dir/DescentTree.o [ 36%] Building CXX object src/CMakeFiles/madeline2.dir/DigitConverter.o [ 37%] Building CXX object src/CMakeFiles/madeline2.dir/DrawingColor.o [ 39%] [ 40%] Building CXX object src/CMakeFiles/madeline2.dir/DrawingLabelManager.o Building CXX object src/CMakeFiles/madeline2.dir/DrawingMetrics.o In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DescentTree.cpp:30: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DescentTree.h:32: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Individual.h:36: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Twin.h:64:18: warning: result of comparison against a string literal is unspecified (use strncmp instead) [-Wstring-compare] if(twinMarker == "."); ^ ~~~ [ 42%] In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DataTable.cpp:27: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DataTable.h:31: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DataColumn.h:54: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Twin.h:64:18: warning: result of comparison against a string literal is unspecified (use strncmp instead) [-Wstring-compare] if(twinMarker == "."); ^ ~~~ In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DataColumn.cpp:27: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DataColumn.h:54: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Twin.h:64:18: warning: result of comparison against a string literal is unspecified (use strncmp instead) [-Wstring-compare] if(twinMarker == "."); ^ ~~~ Building CXX object src/CMakeFiles/madeline2.dir/DrawingCanvas.o [ 44%] Building CXX object src/CMakeFiles/madeline2.dir/Exception.o [ 45%] Building CXX object src/CMakeFiles/madeline2.dir/FieldLabels.o 1 warning generated. [ 47%] Building CXX object src/CMakeFiles/madeline2.dir/FileTypeClassifier.o 1 warning generated. [ 49%] Building CXX object src/CMakeFiles/madeline2.dir/Gender.o [ 50%] Building CXX object src/CMakeFiles/madeline2.dir/Genotype.o In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DrawingLabelManager.cpp:23: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DrawingLabelManager.h:29: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/LabelSet.h:26: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DataTable.h:31: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DataColumn.h:54: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Twin.h:64:18: warning: result of comparison against a string literal is unspecified (use strncmp instead) [-Wstring-compare] if(twinMarker == "."); ^ ~~~ 1 warning generated. [ 52%] Building CXX object src/CMakeFiles/madeline2.dir/Haplotype.o [ 54%] Building CXX object src/CMakeFiles/madeline2.dir/HexavigesimalConverter.o [ 55%] Building CXX object src/CMakeFiles/madeline2.dir/Individual.o [ 57%] Building CXX object src/CMakeFiles/madeline2.dir/Infertility.o In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DrawingCanvas.cpp:32: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DrawingCanvas.h:39: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Individual.h:36: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Twin.h:64:18: warning: result of comparison against a string literal is unspecified (use strncmp instead) [-Wstring-compare] if(twinMarker == "."); ^ ~~~ [ 59%] Building CXX object src/CMakeFiles/madeline2.dir/LabelSet.o 1 warning generated. [ 60%] Building CXX object src/CMakeFiles/madeline2.dir/LASiWrapper.o /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Genotype.cpp:329:12: warning: '&&' within '||' [-Wlogical-op-parentheses] if(_isSNP && !snp || !_isSNP && snp){ ~~~~~~~^~~~~~~ ~~ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Genotype.cpp:329:12: note: place parentheses around the '&&' expression to silence this warning if(_isSNP && !snp || !_isSNP && snp){ ^ ( ) /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Genotype.cpp:329:31: warning: '&&' within '||' [-Wlogical-op-parentheses] if(_isSNP && !snp || !_isSNP && snp){ ~~ ~~~~~~~~^~~~~~ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Genotype.cpp:329:31: note: place parentheses around the '&&' expression to silence this warning if(_isSNP && !snp || !_isSNP && snp){ ^ ( ) /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Genotype.cpp:365:12: warning: '&&' within '||' [-Wlogical-op-parentheses] if(_isSNP && !snp || !_isSNP && snp){ ~~~~~~~^~~~~~~ ~~ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Genotype.cpp:365:12: note: place parentheses around the '&&' expression to silence this warning if(_isSNP && !snp || !_isSNP && snp){ ^ ( ) /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Genotype.cpp:365:31: warning: '&&' within '||' [-Wlogical-op-parentheses] if(_isSNP && !snp || !_isSNP && snp){ ~~ ~~~~~~~~^~~~~~ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Genotype.cpp:365:31: note: place parentheses around the '&&' expression to silence this warning if(_isSNP && !snp || !_isSNP && snp){ ^ ( ) [ 62%] Building CXX object src/CMakeFiles/madeline2.dir/LivingDead.o 4 warnings generated. [ 63%] Building CXX object src/CMakeFiles/madeline2.dir/MadelineTable.o In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Individual.cpp:30: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Individual.h:36: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Twin.h:64:18: warning: result of comparison against a string literal is unspecified (use strncmp instead) [-Wstring-compare] if(twinMarker == "."); ^ ~~~ [ 65%] Building CXX object src/CMakeFiles/madeline2.dir/Message.o [ 67%] Building CXX object src/CMakeFiles/madeline2.dir/Network.o In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/LabelSet.cpp:27: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/LabelSet.h:26: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DataTable.h:31: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DataColumn.h:54: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Twin.h:64:18: warning: result of comparison against a string literal is unspecified (use strncmp instead) [-Wstring-compare] if(twinMarker == "."); ^ ~~~ 1 warning generated. [ 68%] Building CXX object src/CMakeFiles/madeline2.dir/NuclearFamily.o [ 70%] Building CXX object src/CMakeFiles/madeline2.dir/Number.o In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/MadelineTable.cpp:27: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/MadelineTable.h:38: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/ColumnOffset.h:25:9: warning: expression which evaluates to zero treated as a null pointer constant of type 'const char *' [-Wnon-literal-null-conversion] _name='\0'; ^~~~ [ 72%] Building CXX object src/CMakeFiles/madeline2.dir/Parser.o [ 73%] Building CXX object src/CMakeFiles/madeline2.dir/PedigreeSet.o 1 warning generated. [ 75%] Building CXX object src/CMakeFiles/madeline2.dir/Pedigree.o 1 warning generated. [ 77%] Building CXX object src/CMakeFiles/madeline2.dir/Proband.o 1 warning generated. [ 78%] Building CXX object src/CMakeFiles/madeline2.dir/RandomGenerator.o [ 80%] Building CXX object src/CMakeFiles/madeline2.dir/RelationshipEnded.o In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/NuclearFamily.cpp:27: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Individual.h:36: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Twin.h:64:18: warning: result of comparison against a string literal is unspecified (use strncmp instead) [-Wstring-compare] if(twinMarker == "."); ^ ~~~ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Number.cpp:282:25: warning: for loop has empty body [-Wempty-body] for(;*s && *s==' ';s++); if(!*s){ setMissing(); return; } ^ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Number.cpp:282:25: note: put the semicolon on a separate line to silence this warning /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Number.cpp:292:25: warning: for loop has empty body [-Wempty-body] for(;*s && *s==' ';s++); if(!*s){ setMissing(); return; } ^ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Number.cpp:292:25: note: put the semicolon on a separate line to silence this warning /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Number.cpp:303:25: warning: for loop has empty body [-Wempty-body] for(;*s && *s==' ';s++); if(!*s){ setMissing(); return; } ^ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Number.cpp:303:25: note: put the semicolon on a separate line to silence this warning In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Parser.cpp:27: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Parser.h:2: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DataTable.h:31: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DataColumn.h:54: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Twin.h:64:18: warning: result of comparison against a string literal is unspecified (use strncmp instead) [-Wstring-compare] if(twinMarker == "."); ^ ~~~ 3 warnings generated. In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/PedigreeSet.cpp:27: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/PedigreeSet.h:2: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DataTable.h:31: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DataColumn.h:54: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Twin.h:64:18: warning: result of comparison against a string literal is unspecified (use strncmp instead) [-Wstring-compare] if(twinMarker == "."); ^ ~~~ In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Pedigree.cpp:27: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Pedigree.h:5: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Individual.h:36: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Twin.h:64:18: warning: result of comparison against a string literal is unspecified (use strncmp instead) [-Wstring-compare] if(twinMarker == "."); ^ ~~~ 1 warning generated. /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Pedigree.cpp:1237:78: warning: '&&' within '||' [-Wlogical-op-parentheses] if(spouseParentNF->hasChild(father) || spouseParentNF->hasChild(mother) && parentNF->getNumberOfChildren() <= 2){ ~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Pedigree.cpp:1237:78: note: place parentheses around the '&&' expression to silence this warning if(spouseParentNF->hasChild(father) || spouseParentNF->hasChild(mother) && parentNF->getNumberOfChildren() <= 2){ ^ ( ) 1 warning generated. In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Parser.cpp:38: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/MadelineTable.h:38: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/ColumnOffset.h:25:9: warning: expression which evaluates to zero treated as a null pointer constant of type 'const char *' [-Wnon-literal-null-conversion] _name='\0'; ^~~~ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Pedigree.cpp:2025:2: warning: '/*' within block comment [-Wcomment] /* ^ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Pedigree.cpp:2027:2: warning: '/*' within block comment [-Wcomment] /* ^ [ 90%] [ 90%] [ 90%] [ 90%] [ 90%] [ 90%] Building CXX object src/CMakeFiles/madeline2.dir/String.o Building CXX object src/CMakeFiles/madeline2.dir/Sterility.o Building CXX object src/CMakeFiles/madeline2.dir/Sampled.o Building CXX object src/CMakeFiles/madeline2.dir/Twin.o Building CXX object src/CMakeFiles/madeline2.dir/SVG.o Building CXX object src/CMakeFiles/madeline2.dir/UnicodeScript.o In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Twin.cpp:29: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Twin.h:64:18: warning: result of comparison against a string literal is unspecified (use strncmp instead) [-Wstring-compare] if(twinMarker == "."); ^ ~~~ [ 91%] Building CXX object src/CMakeFiles/madeline2.dir/UniqueList.o 1 warning generated. [ 93%] Building CXX object src/CMakeFiles/madeline2.dir/Utf8String.o [ 95%] Building CXX object src/CMakeFiles/madeline2.dir/Warning.o [ 96%] Building CXX object src/CMakeFiles/madeline2.dir/XMLTableParser.o [ 98%] Building CXX object src/CMakeFiles/madeline2.dir/XMLTagManager.o [100%] Building CXX object src/CMakeFiles/madeline2.dir/main.o 4 warnings generated. 2 warnings generated. /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/XMLTableParser.cpp:205:51: warning: '&&' within '||' [-Wlogical-op-parentheses] else if( _pXMLTagManager->cellHasChildXMLNode() && _tagNameMatches( currentNode->name , _pXMLTagManager->getTextTagName() ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/XMLTableParser.cpp:205:51: note: place parentheses around the '&&' expression to silence this warning else if( _pXMLTagManager->cellHasChildXMLNode() && _tagNameMatches( currentNode->name , _pXMLTagManager->getTextTagName() ) ^ ( ) /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/XMLTableParser.cpp:206:55: warning: '&&' within '||' [-Wlogical-op-parentheses] || !_pXMLTagManager->cellHasChildXMLNode() && _tagNameMatches( currentNode->parent->name , _pXMLTagManager->getCellTagName() ) ~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/XMLTableParser.cpp:206:55: note: place parentheses around the '&&' expression to silence this warning || !_pXMLTagManager->cellHasChildXMLNode() && _tagNameMatches( currentNode->parent->name , _pXMLTagManager->getCellTagName() ) ^ ( ) 2 warnings generated. In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/main.cpp:9: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Parser.h:2: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DataTable.h:31: In file included from /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/DataColumn.h:54: /sw/build.build/madeline2-2.0.99-1/madeline2-2.0.99/src/Twin.h:64:18: warning: result of comparison against a string literal is unspecified (use strncmp instead) [-Wstring-compare] if(twinMarker == "."); ^ ~~~ 1 warning generated. Linking CXX executable madeline2 [100%] Built target madeline2 /bin/rm -rf /sw/build.build/root-madeline2-2.0.99-1 /bin/mkdir -p /sw/build.build/root-madeline2-2.0.99-1/sw /bin/mkdir -p /sw/build.build/root-madeline2-2.0.99-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-madeline2-2.0.99-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.2Rtt8 make install DESTDIR=/sw/build.build/root-madeline2-2.0.99-1 [ 1%] Built target unzip [ 8%] Built target translations [100%] Built target madeline2 Install the project... -- Install configuration: "" -- Installing: /sw/build.build/root-madeline2-2.0.99-1/sw/share/locale/fr/LC_MESSAGES/madeline2.mo -- Installing: /sw/build.build/root-madeline2-2.0.99-1/sw/share/locale/th/LC_MESSAGES/madeline2.mo -- Installing: /sw/build.build/root-madeline2-2.0.99-1/sw/share/locale/zh_CN/LC_MESSAGES/madeline2.mo -- Installing: /sw/build.build/root-madeline2-2.0.99-1/sw/share/locale/zh_TW/LC_MESSAGES/madeline2.mo -- Installing: /sw/build.build/root-madeline2-2.0.99-1/sw/docs/AUTHORS -- Installing: /sw/build.build/root-madeline2-2.0.99-1/sw/bin/madeline2 mkdir -p /sw/build.build/root-madeline2-2.0.99-1/sw/share/doc/madeline2 mv /sw/build.build/root-madeline2-2.0.99-1/sw/docs/* /sw/build.build/root-madeline2-2.0.99-1/sw/share/doc/madeline2 rm -rf /sw/build.build/root-madeline2-2.0.99-1/sw/docs rm -rf /sw/build.build/root-madeline2-2.0.99-1/sw//sw sudo -u fink-bld [ENV] sh -c /tmp/fink.pOCsO /bin/rm -f /sw/build.build/root-madeline2-2.0.99-1/sw/info/dir /sw/build.build/root-madeline2-2.0.99-1/sw/info/dir.old /sw/build.build/root-madeline2-2.0.99-1/sw/share/info/dir /sw/build.build/root-madeline2-2.0.99-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-madeline2-2.0.99-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `madeline2' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/madeline2_2.0.99-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-madeline2-2.0.99-1 (Reading database ... 8430 files and directories currently installed.) Removing fink-buildlock-madeline2-2.0.99-1 ...