printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild mmdb 2>&1 The package 'mmdb' will be built without being installed. Reading build dependency for mmdb-1.25.3-102... Reading dependency for mmdb-1.25.3-102... Reading dependency for mmdb-shlibs-1.25.3-102... Reading dependency for mmdb-dev-1.25.3-102... Reading build conflict for mmdb-1.25.3-102... The following package will be rebuilt: mmdb curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/mmdb-1.25.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 48 715k 48 349k 0 0 369k 0 0:00:01 --:--:-- 0:00:01 369k 100 715k 100 715k 0 0 514k 0 0:00:01 0:00:01 --:--:-- 515k Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-mmdb-1.25.3-102 /sw/build.build dpkg-deb: building package `fink-buildlock-mmdb-1.25.3-102' in `/sw/build.build/fink-buildlock-mmdb-1.25.3-102_2014.07.29-18.29.37_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-mmdb-1.25.3-102_2014.07.29-18.29.37_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-mmdb-1.25.3-102. (Reading database ... 7454 files and directories currently installed.) Unpacking fink-buildlock-mmdb-1.25.3-102 (from .../fink-buildlock-mmdb-1.25.3-102_2014.07.29-18.29.37_darwin-x86_64.deb) ... Setting up fink-buildlock-mmdb-1.25.3-102 (2014.07.29-18.29.37) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.I0RAY env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/mmdb-1.25.3.tar.gz mmdb-1.25.3/ mmdb-1.25.3/INSTALL mmdb-1.25.3/COPYING.LESSER mmdb-1.25.3/COPYING mmdb-1.25.3/AUTHORS mmdb-1.25.3/configure mmdb-1.25.3/mmdb.pc.in mmdb-1.25.3/config.h.in mmdb-1.25.3/Makefile.in mmdb-1.25.3/Makefile.am mmdb-1.25.3/aclocal.m4 mmdb-1.25.3/configure.ac mmdb-1.25.3/README mmdb-1.25.3/mmdb/ mmdb-1.25.3/mmdb/hybrid_36.cpp mmdb-1.25.3/mmdb/stream_.cpp mmdb-1.25.3/mmdb/mmdb_selmngr.cpp mmdb-1.25.3/mmdb/mmdb_graph.cpp mmdb-1.25.3/mmdb/mmdb_atom.cpp mmdb-1.25.3/mmdb/random_n.cpp mmdb-1.25.3/mmdb/mmdb_sbase.cpp mmdb-1.25.3/mmdb/mmdb_file.cpp mmdb-1.25.3/mmdb/mmdb_align.cpp mmdb-1.25.3/mmdb/mmdb_xml.cpp mmdb-1.25.3/mmdb/mmdb_sbase0.cpp mmdb-1.25.3/mmdb/mmdb_ficif.cpp mmdb-1.25.3/mmdb/mattype_.cpp mmdb-1.25.3/mmdb/mmdb_utils.cpp mmdb-1.25.3/mmdb/mmdb_rwbrook.cpp mmdb-1.25.3/mmdb/mmdb_cryst.cpp mmdb-1.25.3/mmdb/math_.cpp mmdb-1.25.3/mmdb/mmdb_uddata.cpp mmdb-1.25.3/mmdb/mmdb_model.cpp mmdb-1.25.3/mmdb/mmdb_coormngr.cpp mmdb-1.25.3/mmdb/machine_.cpp mmdb-1.25.3/mmdb/mmdb_title.cpp mmdb-1.25.3/mmdb/mmdb_mmcif.cpp mmdb-1.25.3/mmdb/mmdb_cifdefs.cpp mmdb-1.25.3/mmdb/linalg_.cpp mmdb-1.25.3/mmdb/mmdb_tables.cpp mmdb-1.25.3/mmdb/mmdb_mask.cpp mmdb-1.25.3/mmdb/mmdb_chain.cpp mmdb-1.25.3/mmdb/file_.cpp mmdb-1.25.3/mmdb/mmdb_symop.cpp mmdb-1.25.3/mmdb/mmdb_manager.cpp mmdb-1.25.3/mmdb/mmdb_bondmngr.cpp mmdb-1.25.3/mmdb/bfgs_min.cpp mmdb-1.25.3/mmdb/hybrid_36.h mmdb-1.25.3/mmdb/mmdb_title.h mmdb-1.25.3/mmdb/mmdb_model.h mmdb-1.25.3/mmdb/mmdb_defs.h mmdb-1.25.3/mmdb/mmdb_align.h mmdb-1.25.3/mmdb/mmdb_tables.h mmdb-1.25.3/mmdb/mmdb_mmcif.h mmdb-1.25.3/mmdb/mmdb_cryst.h mmdb-1.25.3/mmdb/mattype_.h mmdb-1.25.3/mmdb/stream_.h mmdb-1.25.3/mmdb/mmdb_symop.h mmdb-1.25.3/mmdb/mmdb_mask.h mmdb-1.25.3/mmdb/mmdb_coormngr.h mmdb-1.25.3/mmdb/math_.h mmdb-1.25.3/mmdb/random_n.h mmdb-1.25.3/mmdb/mmdb_selmngr.h mmdb-1.25.3/mmdb/mmdb_manager.h mmdb-1.25.3/mmdb/mmdb_cifdefs.h mmdb-1.25.3/mmdb/machine_.h mmdb-1.25.3/mmdb/mmdb_xml.h mmdb-1.25.3/mmdb/mmdb_sbase.h mmdb-1.25.3/mmdb/mmdb_graph.h mmdb-1.25.3/mmdb/mmdb_chain.h mmdb-1.25.3/mmdb/linalg_.h mmdb-1.25.3/mmdb/mmdb_utils.h mmdb-1.25.3/mmdb/mmdb_sbase0.h mmdb-1.25.3/mmdb/mmdb_file.h mmdb-1.25.3/mmdb/mmdb_bondmngr.h mmdb-1.25.3/mmdb/file_.h mmdb-1.25.3/mmdb/mmdb_uddata.h mmdb-1.25.3/mmdb/mmdb_rwbrook.h mmdb-1.25.3/mmdb/mmdb_ficif.h mmdb-1.25.3/mmdb/mmdb_atom.h mmdb-1.25.3/mmdb/bfgs_min.h mmdb-1.25.3/m4/ mmdb-1.25.3/m4/lt~obsolete.m4 mmdb-1.25.3/m4/ltversion.m4 mmdb-1.25.3/m4/ltsugar.m4 mmdb-1.25.3/m4/ltoptions.m4 mmdb-1.25.3/m4/libtool.m4 mmdb-1.25.3/build-aux/ mmdb-1.25.3/build-aux/missing mmdb-1.25.3/build-aux/ltmain.sh mmdb-1.25.3/build-aux/install-sh mmdb-1.25.3/build-aux/depcomp mmdb-1.25.3/build-aux/config.sub mmdb-1.25.3/build-aux/config.guess mmdb-1.25.3/build-aux/ar-lib sudo -u fink-bld [ENV] sh -c /tmp/fink.lU2qG /tmp/fink.mR1hH #!/bin/bash -evf LDFLAGS="-L/sw/lib -L/usr/lib" \ ./configure --prefix=/sw --enable-shared checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... build-aux/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-apple-darwin13.3.0 checking host system type... x86_64-apple-darwin13.3.0 checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin13.3.0 file names to x86_64-apple-darwin13.3.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin13.3.0 file names to toolchain format... func_convert_file_noop checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.3.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking whether the g++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fno-common -DPIC checking if g++ PIC flag -fno-common -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.3.0 dyld checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for library containing cos... none required checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating mmdb.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make /Applications/Xcode.app/Contents/Developer/usr/bin/make all-am depbase=`echo mmdb/bfgs_min.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/bfgs_min.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/bfgs_min.lo mmdb/bfgs_min.cpp &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo mmdb/mmdb_bondmngr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_bondmngr.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_bondmngr.lo mmdb/mmdb_bondmngr.cpp &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo mmdb/mmdb_manager.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_manager.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_manager.lo mmdb/mmdb_manager.cpp &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo mmdb/mmdb_symop.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_symop.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_symop.lo mmdb/mmdb_symop.cpp &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo mmdb/file_.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/file_.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/file_.lo mmdb/file_.cpp &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo mmdb/mmdb_chain.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_chain.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_chain.lo mmdb/mmdb_chain.cpp &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo mmdb/mmdb_mask.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_mask.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_mask.lo mmdb/mmdb_mask.cpp &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo mmdb/mmdb_tables.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_tables.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_tables.lo mmdb/mmdb_tables.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/file_.lo -MD -MP -MF mmdb/.deps/file_.Tpo -c mmdb/file_.cpp -fno-common -DPIC -o mmdb/.libs/file_.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/bfgs_min.lo -MD -MP -MF mmdb/.deps/bfgs_min.Tpo -c mmdb/bfgs_min.cpp -fno-common -DPIC -o mmdb/.libs/bfgs_min.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_bondmngr.lo -MD -MP -MF mmdb/.deps/mmdb_bondmngr.Tpo -c mmdb/mmdb_bondmngr.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_bondmngr.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_tables.lo -MD -MP -MF mmdb/.deps/mmdb_tables.Tpo -c mmdb/mmdb_tables.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_tables.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_symop.lo -MD -MP -MF mmdb/.deps/mmdb_symop.Tpo -c mmdb/mmdb_symop.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_symop.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_mask.lo -MD -MP -MF mmdb/.deps/mmdb_mask.Tpo -c mmdb/mmdb_mask.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_mask.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_manager.lo -MD -MP -MF mmdb/.deps/mmdb_manager.Tpo -c mmdb/mmdb_manager.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_manager.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_chain.lo -MD -MP -MF mmdb/.deps/mmdb_chain.Tpo -c mmdb/mmdb_chain.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_chain.o mmdb/bfgs_min.cpp:492:13: warning: add explicit braces to avoid dangling else [-Wdangling-else] } else ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_tables.lo -MD -MP -MF mmdb/.deps/mmdb_tables.Tpo -c mmdb/mmdb_tables.cpp -o mmdb/mmdb_tables.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_mask.lo -MD -MP -MF mmdb/.deps/mmdb_mask.Tpo -c mmdb/mmdb_mask.cpp -o mmdb/mmdb_mask.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_bondmngr.lo -MD -MP -MF mmdb/.deps/mmdb_bondmngr.Tpo -c mmdb/mmdb_bondmngr.cpp -o mmdb/mmdb_bondmngr.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_manager.lo -MD -MP -MF mmdb/.deps/mmdb_manager.Tpo -c mmdb/mmdb_manager.cpp -o mmdb/mmdb_manager.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_symop.lo -MD -MP -MF mmdb/.deps/mmdb_symop.Tpo -c mmdb/mmdb_symop.cpp -o mmdb/mmdb_symop.o >/dev/null 2>&1 depbase=`echo mmdb/linalg_.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/linalg_.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/linalg_.lo mmdb/linalg_.cpp &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo mmdb/mmdb_cifdefs.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_cifdefs.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_cifdefs.lo mmdb/mmdb_cifdefs.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/linalg_.lo -MD -MP -MF mmdb/.deps/linalg_.Tpo -c mmdb/linalg_.cpp -fno-common -DPIC -o mmdb/.libs/linalg_.o depbase=`echo mmdb/mmdb_mmcif.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_mmcif.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_mmcif.lo mmdb/mmdb_mmcif.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_cifdefs.lo -MD -MP -MF mmdb/.deps/mmdb_cifdefs.Tpo -c mmdb/mmdb_cifdefs.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_cifdefs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_cifdefs.lo -MD -MP -MF mmdb/.deps/mmdb_cifdefs.Tpo -c mmdb/mmdb_cifdefs.cpp -o mmdb/mmdb_cifdefs.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_mmcif.lo -MD -MP -MF mmdb/.deps/mmdb_mmcif.Tpo -c mmdb/mmdb_mmcif.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_mmcif.o depbase=`echo mmdb/mmdb_title.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_title.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_title.lo mmdb/mmdb_title.cpp &&\ mv -f $depbase.Tpo $depbase.Plo 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/bfgs_min.lo -MD -MP -MF mmdb/.deps/bfgs_min.Tpo -c mmdb/bfgs_min.cpp -o mmdb/bfgs_min.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/file_.lo -MD -MP -MF mmdb/.deps/file_.Tpo -c mmdb/file_.cpp -o mmdb/file_.o >/dev/null 2>&1 depbase=`echo mmdb/machine_.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/machine_.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/machine_.lo mmdb/machine_.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_title.lo -MD -MP -MF mmdb/.deps/mmdb_title.Tpo -c mmdb/mmdb_title.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_title.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/machine_.lo -MD -MP -MF mmdb/.deps/machine_.Tpo -c mmdb/machine_.cpp -fno-common -DPIC -o mmdb/.libs/machine_.o mmdb/mmdb_mmcif.cpp:1565:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] } else { ^ depbase=`echo mmdb/mmdb_coormngr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_coormngr.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_coormngr.lo mmdb/mmdb_coormngr.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/machine_.lo -MD -MP -MF mmdb/.deps/machine_.Tpo -c mmdb/machine_.cpp -o mmdb/machine_.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_coormngr.lo -MD -MP -MF mmdb/.deps/mmdb_coormngr.Tpo -c mmdb/mmdb_coormngr.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_coormngr.o depbase=`echo mmdb/mmdb_model.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_model.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_model.lo mmdb/mmdb_model.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/linalg_.lo -MD -MP -MF mmdb/.deps/linalg_.Tpo -c mmdb/linalg_.cpp -o mmdb/linalg_.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_model.lo -MD -MP -MF mmdb/.deps/mmdb_model.Tpo -c mmdb/mmdb_model.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_model.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_chain.lo -MD -MP -MF mmdb/.deps/mmdb_chain.Tpo -c mmdb/mmdb_chain.cpp -o mmdb/mmdb_chain.o >/dev/null 2>&1 depbase=`echo mmdb/mmdb_uddata.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_uddata.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_uddata.lo mmdb/mmdb_uddata.cpp &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo mmdb/math_.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/math_.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/math_.lo mmdb/math_.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_uddata.lo -MD -MP -MF mmdb/.deps/mmdb_uddata.Tpo -c mmdb/mmdb_uddata.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_uddata.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/math_.lo -MD -MP -MF mmdb/.deps/math_.Tpo -c mmdb/math_.cpp -fno-common -DPIC -o mmdb/.libs/math_.o depbase=`echo mmdb/mmdb_cryst.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_cryst.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_cryst.lo mmdb/mmdb_cryst.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/math_.lo -MD -MP -MF mmdb/.deps/math_.Tpo -c mmdb/math_.cpp -o mmdb/math_.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_cryst.lo -MD -MP -MF mmdb/.deps/mmdb_cryst.Tpo -c mmdb/mmdb_cryst.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_cryst.o depbase=`echo mmdb/mmdb_rwbrook.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_rwbrook.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_rwbrook.lo mmdb/mmdb_rwbrook.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_uddata.lo -MD -MP -MF mmdb/.deps/mmdb_uddata.Tpo -c mmdb/mmdb_uddata.cpp -o mmdb/mmdb_uddata.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_rwbrook.lo -MD -MP -MF mmdb/.deps/mmdb_rwbrook.Tpo -c mmdb/mmdb_rwbrook.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_rwbrook.o 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_title.lo -MD -MP -MF mmdb/.deps/mmdb_title.Tpo -c mmdb/mmdb_title.cpp -o mmdb/mmdb_title.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_mmcif.lo -MD -MP -MF mmdb/.deps/mmdb_mmcif.Tpo -c mmdb/mmdb_mmcif.cpp -o mmdb/mmdb_mmcif.o >/dev/null 2>&1 depbase=`echo mmdb/mmdb_utils.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_utils.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_utils.lo mmdb/mmdb_utils.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_utils.lo -MD -MP -MF mmdb/.deps/mmdb_utils.Tpo -c mmdb/mmdb_utils.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_utils.o depbase=`echo mmdb/mattype_.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mattype_.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mattype_.lo mmdb/mattype_.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mattype_.lo -MD -MP -MF mmdb/.deps/mattype_.Tpo -c mmdb/mattype_.cpp -fno-common -DPIC -o mmdb/.libs/mattype_.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_cryst.lo -MD -MP -MF mmdb/.deps/mmdb_cryst.Tpo -c mmdb/mmdb_cryst.cpp -o mmdb/mmdb_cryst.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_coormngr.lo -MD -MP -MF mmdb/.deps/mmdb_coormngr.Tpo -c mmdb/mmdb_coormngr.cpp -o mmdb/mmdb_coormngr.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_rwbrook.lo -MD -MP -MF mmdb/.deps/mmdb_rwbrook.Tpo -c mmdb/mmdb_rwbrook.cpp -o mmdb/mmdb_rwbrook.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_utils.lo -MD -MP -MF mmdb/.deps/mmdb_utils.Tpo -c mmdb/mmdb_utils.cpp -o mmdb/mmdb_utils.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mattype_.lo -MD -MP -MF mmdb/.deps/mattype_.Tpo -c mmdb/mattype_.cpp -o mmdb/mattype_.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_model.lo -MD -MP -MF mmdb/.deps/mmdb_model.Tpo -c mmdb/mmdb_model.cpp -o mmdb/mmdb_model.o >/dev/null 2>&1 depbase=`echo mmdb/mmdb_ficif.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_ficif.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_ficif.lo mmdb/mmdb_ficif.cpp &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo mmdb/mmdb_sbase0.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_sbase0.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_sbase0.lo mmdb/mmdb_sbase0.cpp &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo mmdb/mmdb_xml.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_xml.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_xml.lo mmdb/mmdb_xml.cpp &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo mmdb/mmdb_align.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H 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mmdb/mmdb_ficif.lo -MD -MP -MF mmdb/.deps/mmdb_ficif.Tpo -c mmdb/mmdb_ficif.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_ficif.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_xml.lo -MD -MP -MF mmdb/.deps/mmdb_xml.Tpo -c mmdb/mmdb_xml.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_xml.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_align.lo -MD -MP -MF mmdb/.deps/mmdb_align.Tpo -c mmdb/mmdb_align.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_align.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_file.lo -MD -MP -MF mmdb/.deps/mmdb_file.Tpo -c mmdb/mmdb_file.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_file.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_sbase.lo -MD -MP -MF mmdb/.deps/mmdb_sbase.Tpo -c mmdb/mmdb_sbase.cpp -fno-common -DPIC -o mmdb/.libs/mmdb_sbase.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_ficif.lo -MD -MP -MF mmdb/.deps/mmdb_ficif.Tpo -c mmdb/mmdb_ficif.cpp -o mmdb/mmdb_ficif.o >/dev/null 2>&1 mmdb/mmdb_file.cpp:1013:5: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_sbase.lo -MD -MP -MF mmdb/.deps/mmdb_sbase.Tpo -c mmdb/mmdb_sbase.cpp -o mmdb/mmdb_sbase.o >/dev/null 2>&1 depbase=`echo mmdb/random_n.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/random_n.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/random_n.lo mmdb/random_n.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/random_n.lo -MD -MP -MF mmdb/.deps/random_n.Tpo -c mmdb/random_n.cpp -fno-common -DPIC -o mmdb/.libs/random_n.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_xml.lo -MD -MP -MF mmdb/.deps/mmdb_xml.Tpo -c mmdb/mmdb_xml.cpp -o mmdb/mmdb_xml.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_align.lo -MD -MP -MF mmdb/.deps/mmdb_align.Tpo -c mmdb/mmdb_align.cpp -o mmdb/mmdb_align.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/random_n.lo -MD -MP -MF mmdb/.deps/random_n.Tpo -c mmdb/random_n.cpp -o mmdb/random_n.o >/dev/null 2>&1 depbase=`echo mmdb/mmdb_atom.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_atom.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_atom.lo mmdb/mmdb_atom.cpp &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo mmdb/mmdb_graph.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_graph.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/mmdb_graph.lo mmdb/mmdb_graph.cpp &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo mmdb/mmdb_selmngr.lo | sed 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mmdb/stream_.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/stream_.lo mmdb/stream_.cpp &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo mmdb/hybrid_36.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/hybrid_36.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/hybrid_36.lo mmdb/hybrid_36.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/stream_.lo -MD -MP -MF mmdb/.deps/stream_.Tpo -c mmdb/stream_.cpp -fno-common -DPIC -o mmdb/.libs/stream_.o 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_file.lo -MD -MP -MF mmdb/.deps/mmdb_file.Tpo -c mmdb/mmdb_file.cpp -o mmdb/mmdb_file.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/hybrid_36.lo -MD -MP -MF mmdb/.deps/hybrid_36.Tpo -c mmdb/hybrid_36.cpp -fno-common -DPIC -o mmdb/.libs/hybrid_36.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/stream_.lo -MD -MP -MF mmdb/.deps/stream_.Tpo -c mmdb/stream_.cpp -o mmdb/stream_.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_sbase0.lo -MD -MP -MF mmdb/.deps/mmdb_sbase0.Tpo -c mmdb/mmdb_sbase0.cpp -o mmdb/mmdb_sbase0.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/hybrid_36.lo -MD -MP -MF mmdb/.deps/hybrid_36.Tpo -c mmdb/hybrid_36.cpp -o mmdb/hybrid_36.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_graph.lo -MD -MP -MF mmdb/.deps/mmdb_graph.Tpo -c mmdb/mmdb_graph.cpp -o mmdb/mmdb_graph.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_atom.lo -MD -MP -MF mmdb/.deps/mmdb_atom.Tpo -c mmdb/mmdb_atom.cpp -o mmdb/mmdb_atom.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/sw/include -g -O2 -MT mmdb/mmdb_selmngr.lo -MD -MP -MF mmdb/.deps/mmdb_selmngr.Tpo -c mmdb/mmdb_selmngr.cpp -o mmdb/mmdb_selmngr.o >/dev/null 2>&1 /bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -no-undefined -L/sw/lib -L/usr/lib -o mmdb/libmmdb.la -rpath /sw/lib mmdb/bfgs_min.lo mmdb/mmdb_bondmngr.lo mmdb/mmdb_manager.lo mmdb/mmdb_symop.lo mmdb/file_.lo mmdb/mmdb_chain.lo mmdb/mmdb_mask.lo mmdb/mmdb_tables.lo mmdb/linalg_.lo mmdb/mmdb_cifdefs.lo mmdb/mmdb_mmcif.lo mmdb/mmdb_title.lo mmdb/machine_.lo mmdb/mmdb_coormngr.lo mmdb/mmdb_model.lo mmdb/mmdb_uddata.lo mmdb/math_.lo mmdb/mmdb_cryst.lo mmdb/mmdb_rwbrook.lo mmdb/mmdb_utils.lo mmdb/mattype_.lo mmdb/mmdb_ficif.lo mmdb/mmdb_sbase0.lo mmdb/mmdb_xml.lo mmdb/mmdb_align.lo mmdb/mmdb_file.lo mmdb/mmdb_sbase.lo mmdb/random_n.lo mmdb/mmdb_atom.lo mmdb/mmdb_graph.lo mmdb/mmdb_selmngr.lo mmdb/stream_.lo mmdb/hybrid_36.lo libtool: link: g++ -dynamiclib -o mmdb/.libs/libmmdb.0.dylib mmdb/.libs/bfgs_min.o mmdb/.libs/mmdb_bondmngr.o mmdb/.libs/mmdb_manager.o mmdb/.libs/mmdb_symop.o mmdb/.libs/file_.o mmdb/.libs/mmdb_chain.o mmdb/.libs/mmdb_mask.o mmdb/.libs/mmdb_tables.o mmdb/.libs/linalg_.o mmdb/.libs/mmdb_cifdefs.o mmdb/.libs/mmdb_mmcif.o mmdb/.libs/mmdb_title.o mmdb/.libs/machine_.o mmdb/.libs/mmdb_coormngr.o mmdb/.libs/mmdb_model.o mmdb/.libs/mmdb_uddata.o mmdb/.libs/math_.o mmdb/.libs/mmdb_cryst.o mmdb/.libs/mmdb_rwbrook.o mmdb/.libs/mmdb_utils.o mmdb/.libs/mattype_.o mmdb/.libs/mmdb_ficif.o mmdb/.libs/mmdb_sbase0.o mmdb/.libs/mmdb_xml.o mmdb/.libs/mmdb_align.o mmdb/.libs/mmdb_file.o mmdb/.libs/mmdb_sbase.o mmdb/.libs/random_n.o mmdb/.libs/mmdb_atom.o mmdb/.libs/mmdb_graph.o mmdb/.libs/mmdb_selmngr.o mmdb/.libs/stream_.o mmdb/.libs/hybrid_36.o -L/sw/lib -L/usr/lib -O2 -install_name /sw/lib/libmmdb.0.dylib -compatibility_version 1 -current_version 1.0 -Wl,-single_module libtool: link: (cd "mmdb/.libs" && rm -f "libmmdb.dylib" && ln -s "libmmdb.0.dylib" "libmmdb.dylib") libtool: link: ar cru mmdb/.libs/libmmdb.a mmdb/bfgs_min.o mmdb/mmdb_bondmngr.o mmdb/mmdb_manager.o mmdb/mmdb_symop.o mmdb/file_.o mmdb/mmdb_chain.o mmdb/mmdb_mask.o mmdb/mmdb_tables.o mmdb/linalg_.o mmdb/mmdb_cifdefs.o mmdb/mmdb_mmcif.o mmdb/mmdb_title.o mmdb/machine_.o mmdb/mmdb_coormngr.o mmdb/mmdb_model.o mmdb/mmdb_uddata.o mmdb/math_.o mmdb/mmdb_cryst.o mmdb/mmdb_rwbrook.o mmdb/mmdb_utils.o mmdb/mattype_.o mmdb/mmdb_ficif.o mmdb/mmdb_sbase0.o mmdb/mmdb_xml.o mmdb/mmdb_align.o mmdb/mmdb_file.o mmdb/mmdb_sbase.o mmdb/random_n.o mmdb/mmdb_atom.o mmdb/mmdb_graph.o mmdb/mmdb_selmngr.o mmdb/stream_.o mmdb/hybrid_36.o libtool: link: ranlib mmdb/.libs/libmmdb.a libtool: link: ( cd "mmdb/.libs" && rm -f "libmmdb.la" && ln -s "../libmmdb.la" "libmmdb.la" ) /bin/rm -rf /sw/build.build/root-mmdb-1.25.3-102 /bin/mkdir -p /sw/build.build/root-mmdb-1.25.3-102/sw /bin/mkdir -p /sw/build.build/root-mmdb-1.25.3-102/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-mmdb-1.25.3-102 sudo -u fink-bld [ENV] sh -c /tmp/fink.9ekot make install DESTDIR=/sw/build.build/root-mmdb-1.25.3-102 build-aux/install-sh -c -d '/sw/build.build/root-mmdb-1.25.3-102/sw/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c mmdb/libmmdb.la '/sw/build.build/root-mmdb-1.25.3-102/sw/lib' libtool: install: /usr/bin/install -c mmdb/.libs/libmmdb.0.dylib /sw/build.build/root-mmdb-1.25.3-102/sw/lib/libmmdb.0.dylib libtool: install: (cd /sw/build.build/root-mmdb-1.25.3-102/sw/lib && { ln -s -f libmmdb.0.dylib libmmdb.dylib || { rm -f libmmdb.dylib && ln -s libmmdb.0.dylib libmmdb.dylib; }; }) libtool: install: /usr/bin/install -c mmdb/.libs/libmmdb.lai /sw/build.build/root-mmdb-1.25.3-102/sw/lib/libmmdb.la libtool: install: /usr/bin/install -c mmdb/.libs/libmmdb.a /sw/build.build/root-mmdb-1.25.3-102/sw/lib/libmmdb.a libtool: install: chmod 644 /sw/build.build/root-mmdb-1.25.3-102/sw/lib/libmmdb.a libtool: install: ranlib /sw/build.build/root-mmdb-1.25.3-102/sw/lib/libmmdb.a libtool: install: warning: remember to run `libtool --finish /sw/lib' build-aux/install-sh -c -d '/sw/build.build/root-mmdb-1.25.3-102/sw/lib/pkgconfig' /usr/bin/install -c -m 644 mmdb.pc '/sw/build.build/root-mmdb-1.25.3-102/sw/lib/pkgconfig' build-aux/install-sh -c -d '/sw/build.build/root-mmdb-1.25.3-102/sw/include/mmdb' /usr/bin/install -c -m 644 mmdb/bfgs_min.h mmdb/mmdb_atom.h mmdb/mmdb_ficif.h mmdb/mmdb_rwbrook.h mmdb/mmdb_uddata.h mmdb/file_.h mmdb/mmdb_bondmngr.h mmdb/mmdb_file.h mmdb/mmdb_sbase0.h mmdb/mmdb_utils.h mmdb/linalg_.h mmdb/mmdb_chain.h mmdb/mmdb_graph.h mmdb/mmdb_sbase.h mmdb/mmdb_xml.h mmdb/machine_.h mmdb/mmdb_cifdefs.h mmdb/mmdb_manager.h mmdb/mmdb_selmngr.h mmdb/random_n.h mmdb/math_.h mmdb/mmdb_coormngr.h mmdb/mmdb_mask.h mmdb/mmdb_symop.h mmdb/stream_.h mmdb/mattype_.h mmdb/mmdb_cryst.h mmdb/mmdb_mmcif.h mmdb/mmdb_tables.h mmdb/mmdb_align.h mmdb/mmdb_defs.h mmdb/mmdb_model.h mmdb/mmdb_title.h mmdb/hybrid_36.h '/sw/build.build/root-mmdb-1.25.3-102/sw/include/mmdb' mkdir -p /sw/build.build/root-mmdb-1.25.3-102/sw/share/doc/installed-packages touch /sw/build.build/root-mmdb-1.25.3-102/sw/share/doc/installed-packages/mmdb sudo -u fink-bld [ENV] sh -c /tmp/fink.82LCD /bin/rm -f /sw/build.build/root-mmdb-1.25.3-102/sw/info/dir /sw/build.build/root-mmdb-1.25.3-102/sw/info/dir.old /sw/build.build/root-mmdb-1.25.3-102/sw/share/info/dir /sw/build.build/root-mmdb-1.25.3-102/sw/share/info/dir.old /bin/rm -rf /sw/build.build/root-mmdb-shlibs-1.25.3-102 /bin/mkdir -p /sw/build.build/root-mmdb-shlibs-1.25.3-102/sw /bin/mkdir -p /sw/build.build/root-mmdb-shlibs-1.25.3-102/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-mmdb-shlibs-1.25.3-102 sudo -u fink-bld [ENV] sh -c /tmp/fink.kvDnm /usr/bin/install -d -m 755 /sw/build.build/root-mmdb-shlibs-1.25.3-102/sw/lib /bin/mv /sw/build.build/root-mmdb-1.25.3-102/sw/lib/libmmdb.0.dylib /sw/build.build/root-mmdb-shlibs-1.25.3-102/sw/lib/ /bin/rm -f /sw/build.build/root-mmdb-shlibs-1.25.3-102/sw/info/dir /sw/build.build/root-mmdb-shlibs-1.25.3-102/sw/info/dir.old /sw/build.build/root-mmdb-shlibs-1.25.3-102/sw/share/info/dir /sw/build.build/root-mmdb-shlibs-1.25.3-102/sw/share/info/dir.old /bin/rm -rf /sw/build.build/root-mmdb-dev-1.25.3-102 /bin/mkdir -p /sw/build.build/root-mmdb-dev-1.25.3-102/sw /bin/mkdir -p /sw/build.build/root-mmdb-dev-1.25.3-102/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-mmdb-dev-1.25.3-102 sudo -u fink-bld [ENV] sh -c /tmp/fink.Ok2ED /usr/bin/install -d -m 755 /sw/build.build/root-mmdb-dev-1.25.3-102/sw/include/mmdb /bin/mv /sw/build.build/root-mmdb-1.25.3-102/sw/include/mmdb/*.h /sw/build.build/root-mmdb-dev-1.25.3-102/sw/include/mmdb/ /usr/bin/install -d -m 755 /sw/build.build/root-mmdb-dev-1.25.3-102/sw/lib /bin/mv /sw/build.build/root-mmdb-1.25.3-102/sw/lib/*.a /sw/build.build/root-mmdb-dev-1.25.3-102/sw/lib/ /bin/mv /sw/build.build/root-mmdb-1.25.3-102/sw/lib/*.la /sw/build.build/root-mmdb-dev-1.25.3-102/sw/lib/ /usr/bin/install -d -m 755 /sw/build.build/root-mmdb-dev-1.25.3-102/sw/lib/pkgconfig /bin/mv /sw/build.build/root-mmdb-1.25.3-102/sw/lib/pkgconfig/*.pc /sw/build.build/root-mmdb-dev-1.25.3-102/sw/lib/pkgconfig/ /bin/mv /sw/build.build/root-mmdb-1.25.3-102/sw/lib/libmmdb.dylib /sw/build.build/root-mmdb-dev-1.25.3-102/sw/lib/ /bin/rm -f /sw/build.build/root-mmdb-dev-1.25.3-102/sw/info/dir /sw/build.build/root-mmdb-dev-1.25.3-102/sw/info/dir.old /sw/build.build/root-mmdb-dev-1.25.3-102/sw/share/info/dir /sw/build.build/root-mmdb-dev-1.25.3-102/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-mmdb-1.25.3-102 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `mmdb' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/mmdb_1.25.3-102_darwin-x86_64.deb'. Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-mmdb-shlibs-1.25.3-102 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `mmdb-shlibs' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/mmdb-shlibs_1.25.3-102_darwin-x86_64.deb'. Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-mmdb-dev-1.25.3-102 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `mmdb-dev' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/mmdb-dev_1.25.3-102_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-mmdb-1.25.3-102 (Reading database ... 7455 files and directories currently installed.) Removing fink-buildlock-mmdb-1.25.3-102 ...