printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild mpb 2>&1 The package 'mpb' will be built without being installed. Reading build dependency for mpb-1.4.2-1030... Reading dependency for mpb-1.4.2-1030... Reading build conflict for mpb-1.4.2-1030... WARNING: While resolving conflict "g95" for package "mpb-1.4.2-1030", package "g95" was not found. WARNING: While resolving conflict "g77" for package "mpb-1.4.2-1030", package "g77" was not found. fink needs help picking an alternative to satisfy a virtual dependency. The candidates: (1) fftw: Discrete Fourier Transform Library (2) fftw-mpi: Discrete Fourier Transform Library Pick one: [1] (assuming default) The package 'fftw' will be installed. Reading dependency for fftw-2.1.5-1119... Reading runtime dependency for fftw-2.1.5-1119... The package 'fink-package-precedence' will be installed. Reading dependency for fink-package-precedence-0.18-1... Reading runtime dependency for fink-package-precedence-0.18-1... The package 'gcc48-compiler' will be installed. Reading dependency for gcc48-compiler-4.8.3-1000... Reading runtime dependency for gcc48-compiler-4.8.3-1000... The package 'gmp5' will be installed. Reading dependency for gmp5-6.0.0a-1... Reading runtime dependency for gmp5-6.0.0a-1... The package 'guile18-dev' will be installed. Reading dependency for guile18-dev-1.8.8-7... Reading runtime dependency for guile18-dev-1.8.8-7... The package 'hdf5.8' will be installed. Reading dependency for hdf5.8-1.8.13-1... Reading runtime dependency for hdf5.8-1.8.13-1... The package 'libctl' will be installed. Reading dependency for libctl-3.2.1-4... Reading runtime dependency for libctl-3.2.1-4... The package 'libtool2' will be installed. Reading dependency for libtool2-2.4.2-3... Reading runtime dependency for libtool2-2.4.2-3... The package 'fftw-shlibs' will be installed. Reading dependency for fftw-shlibs-2.1.5-1119... Reading runtime dependency for fftw-shlibs-2.1.5-1119... The package 'gcc48-shlibs' will be installed. Reading dependency for gcc48-shlibs-4.8.3-1000... Reading runtime dependency for gcc48-shlibs-4.8.3-1000... The package 'gmp5-shlibs' will be installed. Reading dependency for gmp5-shlibs-6.0.0a-1... Reading runtime dependency for gmp5-shlibs-6.0.0a-1... The package 'guile18-libs' will be installed. Reading dependency for guile18-libs-1.8.8-7... Reading runtime dependency for guile18-libs-1.8.8-7... The package 'guile18-shlibs' will be installed. Reading dependency for guile18-shlibs-1.8.8-7... Reading runtime dependency for guile18-shlibs-1.8.8-7... The package 'hdf5.8-shlibs' will be installed. Reading dependency for hdf5.8-shlibs-1.8.13-1... Reading runtime dependency for hdf5.8-shlibs-1.8.13-1... The package 'libtool2-shlibs' will be installed. Reading dependency for libtool2-shlibs-2.4.2-3... Reading runtime dependency for libtool2-shlibs-2.4.2-3... The package 'libgmpxx5-shlibs' will be installed. Reading dependency for libgmpxx5-shlibs-6.0.0a-1... Reading runtime dependency for libgmpxx5-shlibs-6.0.0a-1... The package 'libmpfr4-shlibs' will be installed. Reading dependency for libmpfr4-shlibs-3.1.2-1... Reading runtime dependency for libmpfr4-shlibs-3.1.2-1... The package 'cloog-org2-shlibs' will be installed. Reading dependency for cloog-org2-shlibs-0.18.2-1... Reading runtime dependency for cloog-org2-shlibs-0.18.2-1... The package 'isl-shlibs' will be installed. Reading dependency for isl-shlibs-0.12.2-2... Reading runtime dependency for isl-shlibs-0.12.2-2... The package 'libmpc3-shlibs' will be installed. Reading dependency for libmpc3-shlibs-1.0.2-1... Reading runtime dependency for libmpc3-shlibs-1.0.2-1... The package 'hdf5.8-bin' will be installed. Reading dependency for hdf5.8-bin-1.8.13-1... Reading runtime dependency for hdf5.8-bin-1.8.13-1... The package 'szip-shlibs' will be installed. Reading dependency for szip-shlibs-2.1-3... Reading runtime dependency for szip-shlibs-2.1-3... The package 'guile18' will be installed. Reading dependency for guile18-1.8.8-7... Reading runtime dependency for guile18-1.8.8-7... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The following package will be rebuilt: mpb The following 24 additional packages will be installed: cloog-org2-shlibs fftw fftw-shlibs fink-package-precedence gcc48-compiler gcc48-shlibs gmp5 gmp5-shlibs guile18 guile18-dev guile18-libs guile18-shlibs hdf5.8 hdf5.8-bin hdf5.8-shlibs isl-shlibs libctl libgmpxx5-shlibs libmpc3-shlibs libmpfr4-shlibs libtool2 libtool2-shlibs readline6-shlibs szip-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/mpb-1.4.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 22 670k 22 151k 0 0 235k 0 0:00:02 --:--:-- 0:00:02 235k 100 670k 100 670k 0 0 485k 0 0:00:01 0:00:01 --:--:-- 485k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/fink-package-precedence_0.18-1_darwin-x86_64.deb Selecting previously deselected package fink-package-precedence. (Reading database ... 4296 files and directories currently installed.) Unpacking fink-package-precedence (from .../fink-package-precedence_0.18-1_darwin-x86_64.deb) ... Setting up fink-package-precedence (0.18-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/gmp5_6.0.0a-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/gmp5-shlibs_6.0.0a-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libgmpxx5-shlibs_6.0.0a-1_darwin-x86_64.deb Selecting previously deselected package gmp5. (Reading database ... 4297 files and directories currently installed.) Unpacking gmp5 (from .../gmp5_6.0.0a-1_darwin-x86_64.deb) ... Selecting previously deselected package gmp5-shlibs. Unpacking gmp5-shlibs (from .../gmp5-shlibs_6.0.0a-1_darwin-x86_64.deb) ... Selecting previously deselected package libgmpxx5-shlibs. Unpacking libgmpxx5-shlibs (from .../libgmpxx5-shlibs_6.0.0a-1_darwin-x86_64.deb) ... Setting up gmp5-shlibs (6.0.0a-1) ... Setting up libgmpxx5-shlibs (6.0.0a-1) ... Setting up gmp5 (6.0.0a-1) ... Clearing dependency_libs of .la files being installed * gmp: (gmp). GNU Multiple Precision Arithmetic Library. install-info(/sw/share/info/gmp.info): creating new section `GNU libraries' Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/devel/isl-shlibs_0.12.2-2_darwin-x86_64.deb Selecting previously deselected package isl-shlibs. (Reading database ... 4347 files and directories currently installed.) Unpacking isl-shlibs (from .../isl-shlibs_0.12.2-2_darwin-x86_64.deb) ... Setting up isl-shlibs (0.12.2-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libmpfr4-shlibs_3.1.2-1_darwin-x86_64.deb Selecting previously deselected package libmpfr4-shlibs. (Reading database ... 4348 files and directories currently installed.) Unpacking libmpfr4-shlibs (from .../libmpfr4-shlibs_3.1.2-1_darwin-x86_64.deb) ... Setting up libmpfr4-shlibs (3.1.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/libtool2_2.4.2-3_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/devel/libtool2-shlibs_2.4.2-3_darwin-x86_64.deb Selecting previously deselected package libtool2. (Reading database ... 4361 files and directories currently installed.) Unpacking libtool2 (from .../libtool2_2.4.2-3_darwin-x86_64.deb) ... Selecting previously deselected package libtool2-shlibs. Unpacking libtool2-shlibs (from .../libtool2-shlibs_2.4.2-3_darwin-x86_64.deb) ... Setting up libtool2-shlibs (2.4.2-3) ... Setting up libtool2 (2.4.2-3) ... Clearing dependency_libs of .la files being installed * Libtool: (libtool). Generic shared library support script. install-info(/sw/share/info/libtool.info): creating new section `GNU programming tools' Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb Selecting previously deselected package readline6-shlibs. (Reading database ... 4450 files and directories currently installed.) Unpacking readline6-shlibs (from .../readline6-shlibs_6.3.6-1_darwin-x86_64.deb) ... Setting up readline6-shlibs (6.3.6-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/szip-shlibs_2.1-3_darwin-x86_64.deb Selecting previously deselected package szip-shlibs. (Reading database ... 4461 files and directories currently installed.) Unpacking szip-shlibs (from .../szip-shlibs_2.1-3_darwin-x86_64.deb) ... Setting up szip-shlibs (2.1-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/devel/cloog-org2-shlibs_0.18.2-1_darwin-x86_64.deb Selecting previously deselected package cloog-org2-shlibs. (Reading database ... 4467 files and directories currently installed.) Unpacking cloog-org2-shlibs (from .../cloog-org2-shlibs_0.18.2-1_darwin-x86_64.deb) ... Setting up cloog-org2-shlibs (0.18.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/guile18_1.8.8-7_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/guile18-shlibs_1.8.8-7_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/guile18-libs_1.8.8-7_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/guile18-dev_1.8.8-7_darwin-x86_64.deb Selecting previously deselected package guile18. (Reading database ... 4468 files and directories currently installed.) Unpacking guile18 (from .../guile18_1.8.8-7_darwin-x86_64.deb) ... Selecting previously deselected package guile18-shlibs. Unpacking guile18-shlibs (from .../guile18-shlibs_1.8.8-7_darwin-x86_64.deb) ... Selecting previously deselected package guile18-libs. Unpacking guile18-libs (from .../guile18-libs_1.8.8-7_darwin-x86_64.deb) ... Selecting previously deselected package guile18-dev. Unpacking guile18-dev (from .../guile18-dev_1.8.8-7_darwin-x86_64.deb) ... Setting up guile18-shlibs (1.8.8-7) ... Setting up guile18-libs (1.8.8-7) ... Clearing dependency_libs of .la files being installed Setting up guile18-dev (1.8.8-7) ... Clearing dependency_libs of .la files being installed Setting up guile18 (1.8.8-7) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/hdf5.8_1.8.13-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/hdf5.8-shlibs_1.8.13-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/hdf5.8-bin_1.8.13-1_darwin-x86_64.deb Selecting previously deselected package hdf5.8. (Reading database ... 4802 files and directories currently installed.) Unpacking hdf5.8 (from .../hdf5.8_1.8.13-1_darwin-x86_64.deb) ... Selecting previously deselected package hdf5.8-shlibs. Unpacking hdf5.8-shlibs (from .../hdf5.8-shlibs_1.8.13-1_darwin-x86_64.deb) ... Selecting previously deselected package hdf5.8-bin. Unpacking hdf5.8-bin (from .../hdf5.8-bin_1.8.13-1_darwin-x86_64.deb) ... Setting up hdf5.8-shlibs (1.8.13-1) ... Setting up hdf5.8-bin (1.8.13-1) ... Setting up hdf5.8 (1.8.13-1) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libmpc3-shlibs_1.0.2-1_darwin-x86_64.deb Selecting previously deselected package libmpc3-shlibs. (Reading database ... 5001 files and directories currently installed.) Unpacking libmpc3-shlibs (from .../libmpc3-shlibs_1.0.2-1_darwin-x86_64.deb) ... Setting up libmpc3-shlibs (1.0.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc48-compiler_4.8.3-1000_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc48-shlibs_4.8.3-1000_darwin-x86_64.deb Selecting previously deselected package gcc48-compiler. (Reading database ... 5004 files and directories currently installed.) Unpacking gcc48-compiler (from .../gcc48-compiler_4.8.3-1000_darwin-x86_64.deb) ... Selecting previously deselected package gcc48-shlibs. Unpacking gcc48-shlibs (from .../gcc48-shlibs_4.8.3-1000_darwin-x86_64.deb) ... Setting up gcc48-shlibs (4.8.3-1000) ... Clearing dependency_libs of .la files being installed Setting up gcc48-compiler (4.8.3-1000) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/libctl_3.2.1-4_darwin-x86_64.deb Selecting previously deselected package libctl. (Reading database ... 10424 files and directories currently installed.) Unpacking libctl (from .../libctl_3.2.1-4_darwin-x86_64.deb) ... Setting up libctl (3.2.1-4) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/fftw_2.1.5-1119_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/fftw-shlibs_2.1.5-1119_darwin-x86_64.deb Selecting previously deselected package fftw. (Reading database ... 10489 files and directories currently installed.) Unpacking fftw (from .../fftw_2.1.5-1119_darwin-x86_64.deb) ... Selecting previously deselected package fftw-shlibs. Unpacking fftw-shlibs (from .../fftw-shlibs_2.1.5-1119_darwin-x86_64.deb) ... Setting up fftw-shlibs (2.1.5-1119) ... Setting up fftw (2.1.5-1119) ... Clearing dependency_libs of .la files being installed * fftw: (fftw). FFTW User's Manual. Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-mpb-1.4.2-1030 /sw/build.build dpkg-deb: building package `fink-buildlock-mpb-1.4.2-1030' in `/sw/build.build/fink-buildlock-mpb-1.4.2-1030_2014.07.29-04.08.32_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-mpb-1.4.2-1030_2014.07.29-04.08.32_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-mpb-1.4.2-1030. (Reading database ... 10558 files and directories currently installed.) Unpacking fink-buildlock-mpb-1.4.2-1030 (from .../fink-buildlock-mpb-1.4.2-1030_2014.07.29-04.08.32_darwin-x86_64.deb) ... Setting up fink-buildlock-mpb-1.4.2-1030 (2014.07.29-04.08.32) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.gfKs9 env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/mpb-1.4.2.tar.gz mpb-1.4.2/ mpb-1.4.2/doc/ mpb-1.4.2/doc/acknowledgments.html mpb-1.4.2/doc/analysis-tutorial.html mpb-1.4.2/doc/developer.html mpb-1.4.2/doc/diamond-b1-eps.gif mpb-1.4.2/doc/diamond-b1.gif mpb-1.4.2/doc/diamond-b3-eps.gif mpb-1.4.2/doc/diamond-b3.gif mpb-1.4.2/doc/diamond-bands.gif mpb-1.4.2/doc/diamond-eps.gif mpb-1.4.2/doc/index.html mpb-1.4.2/doc/installation.html mpb-1.4.2/doc/introduction.html mpb-1.4.2/doc/license.html mpb-1.4.2/doc/tri-rods-bands.gif mpb-1.4.2/doc/tri-rods-eps-1.gif mpb-1.4.2/doc/tri-rods-eps-2.gif mpb-1.4.2/doc/tri-rods-ez1.gif mpb-1.4.2/doc/tri-rods-ez2.gif mpb-1.4.2/doc/tri-rods-ez3.gif mpb-1.4.2/doc/tri-rods-ez4.gif mpb-1.4.2/doc/tri-rods-ez5.gif mpb-1.4.2/doc/tri-rods-ez6.gif mpb-1.4.2/doc/tri-rods-ez7.gif mpb-1.4.2/doc/tri-rods-ez8.gif mpb-1.4.2/doc/user-ref.html mpb-1.4.2/doc/user-tutorial.html mpb-1.4.2/AUTHORS mpb-1.4.2/COPYING mpb-1.4.2/COPYRIGHT mpb-1.4.2/ChangeLog mpb-1.4.2/Makefile.in mpb-1.4.2/NEWS mpb-1.4.2/README mpb-1.4.2/TODO mpb-1.4.2/acx_blas.m4 mpb-1.4.2/acx_lapack.m4 mpb-1.4.2/acx_mpi.m4 mpb-1.4.2/configure.ac mpb-1.4.2/mpb-ctl/ mpb-1.4.2/mpb-ctl/Makefile.in mpb-1.4.2/mpb-ctl/epsilon.c mpb-1.4.2/mpb-ctl/epsilon_file.c mpb-1.4.2/mpb-ctl/field-smob.c mpb-1.4.2/mpb-ctl/field-smob.h mpb-1.4.2/mpb-ctl/fields.c mpb-1.4.2/mpb-ctl/matrix-smob.c mpb-1.4.2/mpb-ctl/matrix-smob.h mpb-1.4.2/mpb-ctl/mpb-split.1 mpb-1.4.2/mpb-ctl/mpb-split.in mpb-1.4.2/mpb-ctl/mpb.1 mpb-1.4.2/mpb-ctl/mpb.c mpb-1.4.2/mpb-ctl/mpb.h mpb-1.4.2/mpb-ctl/mpb.scm.in mpb-1.4.2/mpb-ctl/my-smob.h mpb-1.4.2/mpb-ctl/examples/ mpb-1.4.2/mpb-ctl/examples/bragg-sine.ctl mpb-1.4.2/mpb-ctl/examples/bragg.ctl mpb-1.4.2/mpb-ctl/examples/check.ctl mpb-1.4.2/mpb-ctl/examples/diamond.ctl mpb-1.4.2/mpb-ctl/examples/dos.scm mpb-1.4.2/mpb-ctl/examples/hole-slab.ctl mpb-1.4.2/mpb-ctl/examples/honey-rods.ctl mpb-1.4.2/mpb-ctl/examples/line-defect.ctl mpb-1.4.2/mpb-ctl/examples/sq-rods.ctl mpb-1.4.2/mpb-ctl/examples/tri-holes.ctl mpb-1.4.2/mpb-ctl/examples/tri-rods.ctl mpb-1.4.2/mpb-ctl/examples/tutorial.ctl mpb-1.4.2/src/ mpb-1.4.2/src/matrices/ mpb-1.4.2/src/matrices/Makefile.in mpb-1.4.2/src/matrices/README mpb-1.4.2/src/matrices/blasglue.c mpb-1.4.2/src/matrices/blasglue.h mpb-1.4.2/src/matrices/eigensolver.c mpb-1.4.2/src/matrices/eigensolver.h mpb-1.4.2/src/matrices/eigensolver_davidson.c mpb-1.4.2/src/matrices/eigensolver_utils.c mpb-1.4.2/src/matrices/evectmatrix.c mpb-1.4.2/src/matrices/linmin.c mpb-1.4.2/src/matrices/linmin.h mpb-1.4.2/src/matrices/matrices.c mpb-1.4.2/src/matrices/matrices.h mpb-1.4.2/src/matrices/minpack2-linmin.c mpb-1.4.2/src/matrices/scalar.h mpb-1.4.2/src/matrices/sqmatrix.c mpb-1.4.2/src/matrixio/ mpb-1.4.2/src/matrixio/Makefile.in mpb-1.4.2/src/matrixio/evectmatrixio.c mpb-1.4.2/src/matrixio/fieldio.c mpb-1.4.2/src/matrixio/matrixio.c mpb-1.4.2/src/matrixio/matrixio.h mpb-1.4.2/src/maxwell/ mpb-1.4.2/src/maxwell/Makefile.in mpb-1.4.2/src/maxwell/README mpb-1.4.2/src/maxwell/maxwell.c mpb-1.4.2/src/maxwell/maxwell.h mpb-1.4.2/src/maxwell/maxwell_constraints.c mpb-1.4.2/src/maxwell/maxwell_eps.c mpb-1.4.2/src/maxwell/maxwell_op.c mpb-1.4.2/src/maxwell/maxwell_pre.c mpb-1.4.2/src/util/ mpb-1.4.2/src/util/Makefile.in mpb-1.4.2/src/util/check.h mpb-1.4.2/src/util/debug_malloc.c mpb-1.4.2/src/util/mpi_utils.c mpb-1.4.2/src/util/mpi_utils.h mpb-1.4.2/src/util/mpiglue.h mpb-1.4.2/src/config.h.in mpb-1.4.2/tests/ mpb-1.4.2/tests/Makefile.in mpb-1.4.2/tests/blastest.c mpb-1.4.2/tests/blastest.complex.out mpb-1.4.2/tests/blastest.real.out mpb-1.4.2/tests/eigs_test.c mpb-1.4.2/tests/malloctest.c mpb-1.4.2/tests/maxwell_test.c mpb-1.4.2/tests/normal_vectors.c mpb-1.4.2/utils/ mpb-1.4.2/utils/Makefile.in mpb-1.4.2/utils/mpb-data.1 mpb-1.4.2/utils/mpb-data.c mpb-1.4.2/config.guess mpb-1.4.2/config.sub mpb-1.4.2/install-sh mpb-1.4.2/autom4te.cache/ mpb-1.4.2/autom4te.cache/requests mpb-1.4.2/autom4te.cache/output.0 mpb-1.4.2/autom4te.cache/traces.0 mpb-1.4.2/configure sudo -u fink-bld [ENV] sh -c /tmp/fink.xcvRA [ -r /sw/fink/dists/stable/main/finkinfo/sci/mpb.patch ] sudo -u fink-bld [ENV] sh -c /tmp/fink.hI5Ht patch -p1 < /sw/fink/dists/stable/main/finkinfo/sci/mpb.patch patching file configure sudo -u fink-bld [ENV] sh -c /tmp/fink.Z3tTr /tmp/fink.rF0sy #!/bin/sh -ev export PATH=/sw/share/guile/1.8/scripts/binoverride:$PATH ./configure --prefix=/sw --mandir=/sw/build.build/root-mpb-1.4.2-1030/sw/share/man \ --with-libctl=/sw/share/libctl \ --with-blas="-framework vecLib" \ --with-lapack="-framework vecLib" \ F77=gfortran-fsf-4.8 \ CC=gcc-fsf-4.8 \ FLIBS='-lgfortranbegin -lgfortran' checking for vendor f77 to be used instead of g77... checking for f77... gfortran-fsf-4.8 checking for Fortran 77 compiler default output... a.out checking whether the Fortran 77 compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran-fsf-4.8 accepts -g... yes checking for vendor cc to be used instead of gcc... checking for cc... gcc-fsf-4.8 checking whether we are using the GNU C compiler... yes checking whether gcc-fsf-4.8 accepts -g... yes checking for gcc-fsf-4.8 option to accept ANSI C... none needed checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether make sets $(MAKE)... yes checking for sqrt in -lm... yes checking how to get verbose linking output from gfortran-fsf-4.8... rm: conftest.dSYM: is a directory -v checking for Fortran 77 libraries... -lgfortranbegin -lgfortran checking for dummy main to link with Fortran 77 libraries... rm: conftest.dSYM: is a directory none checking for Fortran 77 name-mangling scheme... rm: conftest.dSYM: is a directory lower case, underscore, no extra underscore checking for fftw in -ldfftw... yes checking for sgemm_ in -framework vecLib... yes checking for cheev_ in -framework vecLib... yes checking for deflate in -lz... yes checking how to run the C preprocessor... gcc-fsf-4.8 -E checking for egrep... grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for H5Pcreate in -lhdf5... yes checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for guile-1.8... yes checking for guile-1.8-config... yes checking if linking to guile works... yes checking for scm_make_smob_type... yes checking for SCM_SMOB_PREDICATE... yes checking for SCM_SMOB_DATA... yes checking for SCM_NEWSMOB... yes checking how to activate readline in Guile... ice-9 readline checking for libctl dir... /sw/share/libctl checking for gen-ctl-io... yes checking for ctl_get_vector3 in -lctl... yes checking ctl.h usability... yes checking ctl.h presence... yes checking for ctl.h... yes checking whether libctl version is at least 2.1.1... ok rm: conftest.dSYM: is a directory checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for getopt... yes checking for strncmp... yes checking whether calling BLAS zdotc works... no checking for bash... /bin/bash configure: creating ./config.status config.status: creating Makefile config.status: creating tests/Makefile config.status: creating src/util/Makefile config.status: creating src/matrices/Makefile config.status: creating src/matrixio/Makefile config.status: creating src/maxwell/Makefile config.status: creating mpb-ctl/Makefile config.status: creating mpb-ctl/mpb.scm config.status: creating mpb-ctl/mpb-split config.status: creating utils/Makefile config.status: creating src/config.h make Making all in src/util gcc-fsf-4.8 -DHAVE_CONFIG_H -I. -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic debug_malloc.c -o debug_malloc.o debug_malloc.c:35:16: warning: 'my_malloc_hook' initialized and declared 'extern' [enabled by default] extern void* (*my_malloc_hook) (size_t) = 0; ^ gcc-fsf-4.8 -DHAVE_CONFIG_H -I. -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic mpi_utils.c -o mpi_utils.o mpi_utils.c: In function 'mpi_assert_equal': mpi_utils.c:72:30: warning: unused parameter 'x' [-Wunused-parameter] void mpi_assert_equal(double x) ^ mpi_utils.c: In function 'mpi_begin_critical_section': mpi_utils.c:99:15: warning: unused variable 'status' [-Wunused-variable] MPI_Status status; ^ mpi_utils.c: In function 'mpi_end_critical_section': mpi_utils.c:107:35: warning: unused parameter 'tag' [-Wunused-parameter] void mpi_end_critical_section(int tag) ^ rm -f util.a ar r util.a debug_malloc.o mpi_utils.o ar: creating archive util.a ranlib util.a Making all in src/matrices gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I. -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic eigensolver.c -o eigensolver.o gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I. -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic eigensolver_utils.c -o eigensolver_utils.o gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I. -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic evectmatrix.c -o evectmatrix.o evectmatrix.c:29:15: warning: 'evectmatrix_flops' initialized and declared 'extern' [enabled by default] extern double evectmatrix_flops = 0; ^ evectmatrix.c: In function 'evectmatrix_copy_slice': evectmatrix.c:56:4: warning: statement with no effect [-Wunused-value] for (i == 0; i < X.n; ++i) ^ evectmatrix.c:55:8: warning: 'i' may be used uninitialized in this function [-Wmaybe-uninitialized] int i; ^ gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I. -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic sqmatrix.c -o sqmatrix.o gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I. -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic matrices.c -o matrices.o gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I. -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic blasglue.c -o blasglue.o gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I. -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic minpack2-linmin.c -o minpack2-linmin.o gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I. -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic linmin.c -o linmin.o gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I. -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic eigensolver_davidson.c -o eigensolver_davidson.o rm -f matrices.a ar r matrices.a eigensolver.o eigensolver_utils.o evectmatrix.o sqmatrix.o matrices.o blasglue.o minpack2-linmin.o linmin.o eigensolver_davidson.o ar: creating archive matrices.a ranlib matrices.a Making all in src/maxwell gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I../matrices -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic maxwell.c -o maxwell.o gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I../matrices -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic maxwell_op.c -o maxwell_op.o maxwell_op.c: In function 'maxwell_vectorfield_otherhalf': maxwell_op.c:461:50: warning: unused parameter 'd' [-Wunused-parameter] void maxwell_vectorfield_otherhalf(maxwell_data *d, scalar_complex *field, ^ maxwell_op.c:461:69: warning: unused parameter 'field' [-Wunused-parameter] void maxwell_vectorfield_otherhalf(maxwell_data *d, scalar_complex *field, ^ maxwell_op.c:462:13: warning: unused parameter 'phasex' [-Wunused-parameter] real phasex, real phasey, real phasez) ^ maxwell_op.c:462:26: warning: unused parameter 'phasey' [-Wunused-parameter] real phasex, real phasey, real phasez) ^ maxwell_op.c:462:39: warning: unused parameter 'phasez' [-Wunused-parameter] real phasex, real phasey, real phasez) ^ maxwell_op.c: In function 'maxwell_scalarfield_otherhalf': maxwell_op.c:667:50: warning: unused parameter 'd' [-Wunused-parameter] void maxwell_scalarfield_otherhalf(maxwell_data *d, real *field) ^ maxwell_op.c:667:59: warning: unused parameter 'field' [-Wunused-parameter] void maxwell_scalarfield_otherhalf(maxwell_data *d, real *field) ^ gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I../matrices -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic maxwell_pre.c -o maxwell_pre.o maxwell_pre.c: In function 'maxwell_simple_precondition': maxwell_pre.c:38:67: warning: unused parameter 'eigenvals' [-Wunused-parameter] void maxwell_simple_precondition(evectmatrix X, void *data, real *eigenvals) ^ maxwell_pre.c: In function 'maxwell_preconditioner': maxwell_pre.c:72:20: warning: unused parameter 'Y' [-Wunused-parameter] evectmatrix Y, real *eigenvals, sqmatrix YtY) ^ maxwell_pre.c: In function 'maxwell_target_preconditioner': maxwell_pre.c:85:11: warning: unused variable 'omega_sqr' [-Wunused-variable] real omega_sqr = td->target_frequency * td->target_frequency; ^ maxwell_pre.c:80:20: warning: unused parameter 'Y' [-Wunused-parameter] evectmatrix Y, real *eigenvals, ^ maxwell_pre.c:80:29: warning: unused parameter 'eigenvals' [-Wunused-parameter] evectmatrix Y, real *eigenvals, ^ maxwell_pre.c: In function 'maxwell_preconditioner2': maxwell_pre.c:201:21: warning: unused parameter 'Y' [-Wunused-parameter] evectmatrix Y, real *eigenvals, ^ maxwell_pre.c:201:30: warning: unused parameter 'eigenvals' [-Wunused-parameter] evectmatrix Y, real *eigenvals, ^ gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I../matrices -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic maxwell_eps.c -o maxwell_eps.o gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I../matrices -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic maxwell_constraints.c -o maxwell_constraints.o rm -f maxwell.a ar r maxwell.a maxwell.o maxwell_op.o maxwell_pre.o maxwell_eps.o maxwell_constraints.o ar: creating archive maxwell.a ranlib maxwell.a Making all in src/matrixio gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I../matrices -I. -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic fieldio.c -o fieldio.o In file included from /sw/include/hdf5.h:45:0, from matrixio.h:24, from fieldio.c:28: /sw/include/H5FDlog.h:65:81: warning: ISO C90 does not support 'long long' [-Wlong-long] H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size); ^ gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I../matrices -I. -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic evectmatrixio.c -o evectmatrixio.o In file included from /sw/include/hdf5.h:45:0, from matrixio.h:24, from evectmatrixio.c:27: /sw/include/H5FDlog.h:65:81: warning: ISO C90 does not support 'long long' [-Wlong-long] H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size); ^ gcc-fsf-4.8 -DHAVE_CONFIG_H -I../util -I../matrices -I. -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic matrixio.c -o matrixio.o In file included from /sw/include/hdf5.h:45:0, from matrixio.h:24, from matrixio.c:34: /sw/include/H5FDlog.h:65:81: warning: ISO C90 does not support 'long long' [-Wlong-long] H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size); ^ matrixio.c: In function 'matrixio_write_string_attr': matrixio.c:172:46: warning: cast discards '__attribute__((const))' qualifier from pointer target type [-Wcast-qual] write_attr(id, type_id, space_id, name, (void*) val); ^ matrixio.c: In function 'matrixio_write_data_attr': matrixio.c:207:46: warning: cast discards '__attribute__((const))' qualifier from pointer target type [-Wcast-qual] write_attr(id, type_id, space_id, name, (void*) val); ^ matrixio.c: In function 'matrixio_create_sub': matrixio.c:424:17: warning: statement with no effect [-Wunused-value] IF_EXCLUSIVE(0,MPI_Barrier(MPI_COMM_WORLD)); ^ matrixio.c:57:32: note: in definition of macro 'IF_EXCLUSIVE' # define IF_EXCLUSIVE(yes,no) yes ^ matrixio.c:427:17: warning: statement with no effect [-Wunused-value] IF_EXCLUSIVE(0,MPI_Barrier(MPI_COMM_WORLD)); ^ matrixio.c:57:32: note: in definition of macro 'IF_EXCLUSIVE' # define IF_EXCLUSIVE(yes,no) yes ^ In file included from matrixio.c:29:0: matrixio.c: In function 'matrixio_open_dataset': matrixio.c:471:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] CHECK(dims_copy[i] == dims[i], ^ ../util/check.h:37:12: note: in definition of macro 'CHECK' if (!(condition)) { \ ^ matrixio.c: In function 'matrixio_create_dataset': matrixio.c:502:17: warning: statement with no effect [-Wunused-value] IF_EXCLUSIVE(0,MPI_Barrier(MPI_COMM_WORLD)); ^ matrixio.c:57:32: note: in definition of macro 'IF_EXCLUSIVE' # define IF_EXCLUSIVE(yes,no) yes ^ matrixio.c: In function 'matrixio_write_real_data': matrixio.c:655:10: warning: pointer targets in passing argument 3 of 'H5Sselect_hyperslab' differ in signedness [-Wpointer-sign] start, NULL, count, NULL); ^ In file included from /sw/include/hdf5.h:38:0, from matrixio.h:24, from matrixio.c:34: /sw/include/H5Spublic.h:111:15: note: expected 'const hsize_t *' but argument is of type 'hssize_t *' H5_DLL herr_t H5Sselect_hyperslab(hid_t space_id, H5S_seloper_t op, ^ matrixio.c:665:10: warning: pointer targets in passing argument 3 of 'H5Sselect_hyperslab' differ in signedness [-Wpointer-sign] count, NULL); ^ In file included from /sw/include/hdf5.h:38:0, from matrixio.h:24, from matrixio.c:34: /sw/include/H5Spublic.h:111:15: note: expected 'const hsize_t *' but argument is of type 'hssize_t *' H5_DLL herr_t H5Sselect_hyperslab(hid_t space_id, H5S_seloper_t op, ^ In file included from matrixio.c:29:0: matrixio.c: In function 'matrixio_read_real_data': matrixio.c:784:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] CHECK(dims_copy[i] == dims[i], ^ ../util/check.h:37:12: note: in definition of macro 'CHECK' if (!(condition)) { \ ^ matrixio.c:822:10: warning: pointer targets in passing argument 3 of 'H5Sselect_hyperslab' differ in signedness [-Wpointer-sign] start, strides, count, NULL); ^ In file included from /sw/include/hdf5.h:38:0, from matrixio.h:24, from matrixio.c:34: /sw/include/H5Spublic.h:111:15: note: expected 'const hsize_t *' but argument is of type 'hssize_t *' H5_DLL herr_t H5Sselect_hyperslab(hid_t space_id, H5S_seloper_t op, ^ matrixio.c:827:10: warning: pointer targets in passing argument 3 of 'H5Sselect_hyperslab' differ in signedness [-Wpointer-sign] start, NULL, count, NULL); ^ In file included from /sw/include/hdf5.h:38:0, from matrixio.h:24, from matrixio.c:34: /sw/include/H5Spublic.h:111:15: note: expected 'const hsize_t *' but argument is of type 'hssize_t *' H5_DLL herr_t H5Sselect_hyperslab(hid_t space_id, H5S_seloper_t op, ^ rm -f matrixio.a ar r matrixio.a fieldio.o evectmatrixio.o matrixio.o ar: creating archive matrixio.a ranlib matrixio.a Making all in tests gcc-fsf-4.8 -DHAVE_CONFIG_H -I../src/util -I../src/matrices -I../src/maxwell -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic blastest.c -o blastest.o gcc-fsf-4.8 -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic -L/sw/lib blastest.o ../src/maxwell/maxwell.a ../src/matrices/matrices.a ../src/util/util.a -lctl -I/sw/include -D_THREAD_SAFE -L/sw/lib -lguile -lltdl -L/sw/lib -lgmp -lm -lltdl -lhdf5 -lz -framework vecLib -framework vecLib -ldfftw -lm -lgfortranbegin -lgfortran -o blastest gcc-fsf-4.8 -DHAVE_CONFIG_H -I../src/util -I../src/matrices -I../src/maxwell -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic eigs_test.c -o eigs_test.o eigs_test.c: In function 'Aop': eigs_test.c:248:51: warning: unused parameter 'data' [-Wunused-parameter] void Aop(evectmatrix Xin, evectmatrix Xout, void *data, ^ eigs_test.c:249:7: warning: unused parameter 'is_current_eigenvector' [-Wunused-parameter] int is_current_eigenvector, evectmatrix Work) ^ eigs_test.c:249:43: warning: unused parameter 'Work' [-Wunused-parameter] int is_current_eigenvector, evectmatrix Work) ^ eigs_test.c: In function 'Ainvop': eigs_test.c:258:54: warning: unused parameter 'data' [-Wunused-parameter] void Ainvop(evectmatrix Xin, evectmatrix Xout, void *data, ^ eigs_test.c:259:18: warning: unused parameter 'Y' [-Wunused-parameter] evectmatrix Y, real *eigenvals, sqmatrix YtY) ^ eigs_test.c:259:27: warning: unused parameter 'eigenvals' [-Wunused-parameter] evectmatrix Y, real *eigenvals, sqmatrix YtY) ^ eigs_test.c:259:47: warning: unused parameter 'YtY' [-Wunused-parameter] evectmatrix Y, real *eigenvals, sqmatrix YtY) ^ eigs_test.c: In function 'Cop_old': eigs_test.c:269:55: warning: unused parameter 'data' [-Wunused-parameter] void Cop_old(evectmatrix Xin, evectmatrix Xout, void *data, ^ eigs_test.c:270:15: warning: unused parameter 'Y' [-Wunused-parameter] evectmatrix Y, real *eigenvals, sqmatrix YtY) ^ eigs_test.c:270:24: warning: unused parameter 'eigenvals' [-Wunused-parameter] evectmatrix Y, real *eigenvals, sqmatrix YtY) ^ eigs_test.c: In function 'Cop': eigs_test.c:294:51: warning: unused parameter 'data' [-Wunused-parameter] void Cop(evectmatrix Xin, evectmatrix Xout, void *data, ^ eigs_test.c:295:16: warning: unused parameter 'Y' [-Wunused-parameter] evectmatrix Y, real *eigenvals, sqmatrix YtY) ^ gcc-fsf-4.8 -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic -L/sw/lib eigs_test.o ../src/maxwell/maxwell.a ../src/matrices/matrices.a ../src/util/util.a -lctl -I/sw/include -D_THREAD_SAFE -L/sw/lib -lguile -lltdl -L/sw/lib -lgmp -lm -lltdl -lhdf5 -lz -framework vecLib -framework vecLib -ldfftw -lm -lgfortranbegin -lgfortran -o eigs_test gcc-fsf-4.8 -DHAVE_CONFIG_H -I../src/util -I../src/matrices -I../src/maxwell -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic maxwell_test.c -o maxwell_test.o maxwell_test.c: In function 'usage': maxwell_test.c:215:6: warning: string length '926' is greater than the length '509' ISO C90 compilers are required to support [-Woverlength-strings] " -v Verbose output.\n", ^ gcc-fsf-4.8 -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic -L/sw/lib maxwell_test.o ../src/maxwell/maxwell.a ../src/matrices/matrices.a ../src/util/util.a -lctl -I/sw/include -D_THREAD_SAFE -L/sw/lib -lguile -lltdl -L/sw/lib -lgmp -lm -lltdl -lhdf5 -lz -framework vecLib -framework vecLib -ldfftw -lm -lgfortranbegin -lgfortran -o maxwell_test gcc-fsf-4.8 -DHAVE_CONFIG_H -I../src/util -I../src/matrices -I../src/maxwell -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic malloctest.c -o malloctest.o gcc-fsf-4.8 -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic -L/sw/lib malloctest.o ../src/maxwell/maxwell.a ../src/matrices/matrices.a ../src/util/util.a -lctl -I/sw/include -D_THREAD_SAFE -L/sw/lib -lguile -lltdl -L/sw/lib -lgmp -lm -lltdl -lhdf5 -lz -framework vecLib -framework vecLib -ldfftw -lm -lgfortranbegin -lgfortran -o malloctest gcc-fsf-4.8 -DHAVE_CONFIG_H -I../src/util -I../src/matrices -I../src/maxwell -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic normal_vectors.c -o normal_vectors.o In file included from /sw/include/libguile/__scm.h:52:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from normal_vectors.c:10: /sw/include/libguile/scmconfig.h:83:14: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef long long long_long; ^ /sw/include/libguile/scmconfig.h:84:23: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef unsigned long long ulong_long; ^ In file included from /sw/include/libguile.h:116:0, from /sw/include/ctl.h:28, from normal_vectors.c:10: /sw/include/libguile/discouraged.h:93:37: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_long_long2num (long long sl); ^ /sw/include/libguile/discouraged.h:94:47: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_ulong_long2num (unsigned long long sl); ^ /sw/include/libguile/discouraged.h:95:14: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API long long scm_num2long_long (SCM num, unsigned long int pos, ^ /sw/include/libguile/discouraged.h:97:23: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API unsigned long long scm_num2ulong_long (SCM num, unsigned long int pos, ^ normal_vectors.c: In function 'main': normal_vectors.c:55:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (nsq = 0; nsq < sizeof(num_sq_pts) / sizeof(int); ++nsq) { ^ gcc-fsf-4.8 -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic -L/sw/lib normal_vectors.o ../src/maxwell/maxwell.a ../src/matrices/matrices.a ../src/util/util.a -lctl -I/sw/include -D_THREAD_SAFE -L/sw/lib -lguile -lltdl -L/sw/lib -lgmp -lm -lltdl -lhdf5 -lz -framework vecLib -framework vecLib -ldfftw -lm -lgfortranbegin -lgfortran -o normal_vectors Making all in mpb-ctl gen-ctl-io mpb.scm /sw/share/libctl cp -f /sw/share/libctl/base/main.c main.c gcc-fsf-4.8 -c -DHAVE_CONFIG_H -DCTL_SCM='"'/sw/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/sw/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/sw/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic main.c -o main.o In file included from /sw/include/libguile/__scm.h:52:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from ctl-io.h:7, from main.c:37: /sw/include/libguile/scmconfig.h:83:14: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef long long long_long; ^ /sw/include/libguile/scmconfig.h:84:23: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef unsigned long long ulong_long; ^ In file included from /sw/include/libguile.h:116:0, from /sw/include/ctl.h:28, from ctl-io.h:7, from main.c:37: /sw/include/libguile/discouraged.h:93:37: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_long_long2num (long long sl); ^ /sw/include/libguile/discouraged.h:94:47: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_ulong_long2num (unsigned long long sl); ^ /sw/include/libguile/discouraged.h:95:14: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API long long scm_num2long_long (SCM num, unsigned long int pos, ^ /sw/include/libguile/discouraged.h:97:23: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API unsigned long long scm_num2ulong_long (SCM num, unsigned long int pos, ^ main.c: In function 'main_entry': main.c:176:12: warning: unused parameter 'main_entry_data' [-Wunused-parameter] void *main_entry_data, /* unused, required by scm_boot_guile */ ^ gcc-fsf-4.8 -c -DHAVE_CONFIG_H -DCTL_SCM='"'/sw/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/sw/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/sw/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic ctl-io.c -o ctl-io.o In file included from /sw/include/libguile/__scm.h:52:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from ctl-io.h:7, from ctl-io.c:7: /sw/include/libguile/scmconfig.h:83:14: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef long long long_long; ^ /sw/include/libguile/scmconfig.h:84:23: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef unsigned long long ulong_long; ^ In file included from /sw/include/libguile.h:116:0, from /sw/include/ctl.h:28, from ctl-io.h:7, from ctl-io.c:7: /sw/include/libguile/discouraged.h:93:37: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_long_long2num (long long sl); ^ /sw/include/libguile/discouraged.h:94:47: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_ulong_long2num (unsigned long long sl); ^ /sw/include/libguile/discouraged.h:95:14: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API long long scm_num2long_long (SCM num, unsigned long int pos, ^ /sw/include/libguile/discouraged.h:97:23: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API unsigned long long scm_num2ulong_long (SCM num, unsigned long int pos, ^ ctl-io.c: In function 'block_equal': ctl-io.c:411:8: warning: suggest braces around empty body in an 'else' statement [-Wempty-body] } else; ^ ctl-io.c: In function 'cylinder_equal': ctl-io.c:465:8: warning: suggest braces around empty body in an 'else' statement [-Wempty-body] } else; ^ ctl-io.c: In function 'geometric_object_equal': ctl-io.c:506:8: warning: suggest braces around empty body in an 'else' statement [-Wempty-body] } else; ^ ctl-io.c: In function 'material_type_equal': ctl-io.c:555:8: warning: suggest braces around empty body in an 'else' statement [-Wempty-body] } else; ^ ctl-io.c: In function 'lattice_destroy': ctl-io.c:562:25: warning: unused parameter 'o' [-Wunused-parameter] lattice_destroy(lattice o) ^ ctl-io.c: In function 'ellipsoid_destroy': ctl-io.c:567:29: warning: unused parameter 'o' [-Wunused-parameter] ellipsoid_destroy(ellipsoid o) ^ ctl-io.c: In function 'sphere_destroy': ctl-io.c:582:23: warning: unused parameter 'o' [-Wunused-parameter] sphere_destroy(sphere o) ^ ctl-io.c: In function 'wedge_destroy': ctl-io.c:587:21: warning: unused parameter 'o' [-Wunused-parameter] wedge_destroy(wedge o) ^ ctl-io.c: In function 'cone_destroy': ctl-io.c:592:19: warning: unused parameter 'o' [-Wunused-parameter] cone_destroy(cone o) ^ ctl-io.c: In function 'material_function_destroy': ctl-io.c:642:45: warning: unused parameter 'o' [-Wunused-parameter] material_function_destroy(material_function o) ^ ctl-io.c: In function 'dielectric_anisotropic_destroy': ctl-io.c:647:55: warning: unused parameter 'o' [-Wunused-parameter] dielectric_anisotropic_destroy(dielectric_anisotropic o) ^ ctl-io.c: In function 'dielectric_destroy': ctl-io.c:652:31: warning: unused parameter 'o' [-Wunused-parameter] dielectric_destroy(dielectric o) ^ gcc-fsf-4.8 -c -DHAVE_CONFIG_H -DCTL_SCM='"'/sw/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/sw/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/sw/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic mpb.c -o mpb.o In file included from /sw/include/libguile/__scm.h:52:0, from /sw/include/libguile.h:30, from /sw/include/guile/gh.h:24, from mpb.c:34: /sw/include/libguile/scmconfig.h:83:14: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef long long long_long; ^ /sw/include/libguile/scmconfig.h:84:23: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef unsigned long long ulong_long; ^ In file included from /sw/include/libguile.h:116:0, from /sw/include/guile/gh.h:24, from mpb.c:34: /sw/include/libguile/discouraged.h:93:37: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_long_long2num (long long sl); ^ /sw/include/libguile/discouraged.h:94:47: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_ulong_long2num (unsigned long long sl); ^ /sw/include/libguile/discouraged.h:95:14: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API long long scm_num2long_long (SCM num, unsigned long int pos, ^ /sw/include/libguile/discouraged.h:97:23: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API unsigned long long scm_num2ulong_long (SCM num, unsigned long int pos, ^ In file included from ./ctl-io.h:7:0, from mpb.c:48: /sw/include/ctl.h:132:0: warning: "gh_load" redefined [enabled by default] # define gh_load scm_c_primitive_load ^ In file included from mpb.c:34:0: /sw/include/guile/gh.h:56:0: note: this is the location of the previous definition #define gh_load(fname) gh_eval_file(fname) ^ In file included from mpb.c:38:0: mpb.c: In function 'ctl_start_hook': ../src/util/mpiglue.h:42:29: warning: statement with no effect [-Wunused-value] #define MPI_Init(argc,argv) 0 ^ mpb.c:76:6: note: in expansion of macro 'MPI_Init' MPI_Init(argc, argv); ^ mpb.c:73:26: warning: unused parameter 'argc' [-Wunused-parameter] void ctl_start_hook(int *argc, char ***argv) ^ mpb.c:73:40: warning: unused parameter 'argv' [-Wunused-parameter] void ctl_start_hook(int *argc, char ***argv) ^ In file included from mpb.c:38:0: mpb.c: In function 'ctl_stop_hook': ../src/util/mpiglue.h:43:24: warning: statement with no effect [-Wunused-value] #define MPI_Finalize() 0 ^ mpb.c:81:6: note: in expansion of macro 'MPI_Finalize' MPI_Finalize(); ^ gcc-fsf-4.8 -c -DHAVE_CONFIG_H -DCTL_SCM='"'/sw/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/sw/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/sw/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic epsilon.c -o epsilon.o In file included from /sw/include/libguile/__scm.h:52:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from ./ctl-io.h:7, from epsilon.c:28: /sw/include/libguile/scmconfig.h:83:14: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef long long long_long; ^ /sw/include/libguile/scmconfig.h:84:23: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef unsigned long long ulong_long; ^ In file included from /sw/include/libguile.h:116:0, from /sw/include/ctl.h:28, from ./ctl-io.h:7, from epsilon.c:28: /sw/include/libguile/discouraged.h:93:37: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_long_long2num (long long sl); ^ /sw/include/libguile/discouraged.h:94:47: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_ulong_long2num (unsigned long long sl); ^ /sw/include/libguile/discouraged.h:95:14: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API long long scm_num2long_long (SCM num, unsigned long int pos, ^ /sw/include/libguile/discouraged.h:97:23: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API unsigned long long scm_num2ulong_long (SCM num, unsigned long int pos, ^ gcc-fsf-4.8 -c -DHAVE_CONFIG_H -DCTL_SCM='"'/sw/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/sw/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/sw/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic fields.c -o fields.o In file included from /sw/include/hdf5.h:45:0, from ../src/matrixio/matrixio.h:24, from fields.c:28: /sw/include/H5FDlog.h:65:81: warning: ISO C90 does not support 'long long' [-Wlong-long] H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size); ^ In file included from /sw/include/libguile/__scm.h:52:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from ./ctl-io.h:7, from fields.c:31: /sw/include/libguile/scmconfig.h:83:14: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef long long long_long; ^ /sw/include/libguile/scmconfig.h:84:23: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef unsigned long long ulong_long; ^ In file included from /sw/include/libguile.h:116:0, from /sw/include/ctl.h:28, from ./ctl-io.h:7, from fields.c:31: /sw/include/libguile/discouraged.h:93:37: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_long_long2num (long long sl); ^ /sw/include/libguile/discouraged.h:94:47: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_ulong_long2num (unsigned long long sl); ^ /sw/include/libguile/discouraged.h:95:14: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API long long scm_num2long_long (SCM num, unsigned long int pos, ^ /sw/include/libguile/discouraged.h:97:23: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API unsigned long long scm_num2ulong_long (SCM num, unsigned long int pos, ^ fields.c: In function 'get_epsilon': fields.c:172:51: warning: variable 'local_y_start' set but not used [-Wunused-but-set-variable] int i, N, last_dim, last_dim_stored, nx, nz, local_y_start; ^ fields.c:172:47: warning: variable 'nz' set but not used [-Wunused-but-set-variable] int i, N, last_dim, last_dim_stored, nx, nz, local_y_start; ^ fields.c:172:43: warning: variable 'nx' set but not used [-Wunused-but-set-variable] int i, N, last_dim, last_dim_stored, nx, nz, local_y_start; ^ fields.c:172:26: warning: variable 'last_dim_stored' set but not used [-Wunused-but-set-variable] int i, N, last_dim, last_dim_stored, nx, nz, local_y_start; ^ fields.c:172:16: warning: variable 'last_dim' set but not used [-Wunused-but-set-variable] int i, N, last_dim, last_dim_stored, nx, nz, local_y_start; ^ fields.c: In function 'compute_field_energy': fields.c:326:51: warning: variable 'local_y_start' set but not used [-Wunused-but-set-variable] int i, N, last_dim, last_dim_stored, nx, nz, local_y_start; ^ fields.c:326:47: warning: variable 'nz' set but not used [-Wunused-but-set-variable] int i, N, last_dim, last_dim_stored, nx, nz, local_y_start; ^ fields.c:326:43: warning: variable 'nx' set but not used [-Wunused-but-set-variable] int i, N, last_dim, last_dim_stored, nx, nz, local_y_start; ^ fields.c:326:26: warning: variable 'last_dim_stored' set but not used [-Wunused-but-set-variable] int i, N, last_dim, last_dim_stored, nx, nz, local_y_start; ^ fields.c:326:16: warning: variable 'last_dim' set but not used [-Wunused-but-set-variable] int i, N, last_dim, last_dim_stored, nx, nz, local_y_start; ^ fields.c: In function 'get_val': fields.c:562:11: warning: unused parameter 'nx' [-Wunused-parameter] int nx, int ny, int nz, int last_dim_size, ^ fields.c:562:35: warning: unused parameter 'last_dim_size' [-Wunused-parameter] int nx, int ny, int nz, int last_dim_size, ^ fields.c: In function 'compute_energy_in_dielectric': fields.c:802:51: warning: variable 'local_y_start' set but not used [-Wunused-but-set-variable] int N, i, last_dim, last_dim_stored, nx, nz, local_y_start; ^ fields.c:802:47: warning: variable 'nz' set but not used [-Wunused-but-set-variable] int N, i, last_dim, last_dim_stored, nx, nz, local_y_start; ^ fields.c:802:43: warning: variable 'nx' set but not used [-Wunused-but-set-variable] int N, i, last_dim, last_dim_stored, nx, nz, local_y_start; ^ fields.c:802:26: warning: variable 'last_dim_stored' set but not used [-Wunused-but-set-variable] int N, i, last_dim, last_dim_stored, nx, nz, local_y_start; ^ fields.c:802:16: warning: variable 'last_dim' set but not used [-Wunused-but-set-variable] int N, i, last_dim, last_dim_stored, nx, nz, local_y_start; ^ fields.c: In function 'output_scalarfield': fields.c:875:15: warning: unused parameter 'last_dim_index' [-Wunused-parameter] int last_dim_index, ^ fields.c:876:15: warning: unused parameter 'last_dim_start' [-Wunused-parameter] int last_dim_start, int last_dim_size, ^ fields.c:876:35: warning: unused parameter 'last_dim_size' [-Wunused-parameter] int last_dim_start, int last_dim_size, ^ fields.c:877:15: warning: unused parameter 'first_dim_start' [-Wunused-parameter] int first_dim_start, int first_dim_size, ^ fields.c:877:36: warning: unused parameter 'first_dim_size' [-Wunused-parameter] int first_dim_start, int first_dim_size, ^ fields.c:878:15: warning: unused parameter 'write_start0_special' [-Wunused-parameter] int write_start0_special) ^ fields.c: In function 'compute_energy_in_object_list': fields.c:1181:54: warning: variable 'last_dim' set but not used [-Wunused-but-set-variable] int i, j, k, n1, n2, n3, n_other, n_last, rank, last_dim; ^ fields.c:1181:48: warning: variable 'rank' set but not used [-Wunused-but-set-variable] int i, j, k, n1, n2, n3, n_other, n_last, rank, last_dim; ^ fields.c:1181:40: warning: variable 'n_last' set but not used [-Wunused-but-set-variable] int i, j, k, n1, n2, n3, n_other, n_last, rank, last_dim; ^ fields.c:1181:31: warning: variable 'n_other' set but not used [-Wunused-but-set-variable] int i, j, k, n1, n2, n3, n_other, n_last, rank, last_dim; ^ fields.c: In function 'compute_field_integral': fields.c:1329:54: warning: variable 'last_dim' set but not used [-Wunused-but-set-variable] int i, j, k, n1, n2, n3, n_other, n_last, rank, last_dim; ^ fields.c:1329:48: warning: variable 'rank' set but not used [-Wunused-but-set-variable] int i, j, k, n1, n2, n3, n_other, n_last, rank, last_dim; ^ fields.c:1329:40: warning: variable 'n_last' set but not used [-Wunused-but-set-variable] int i, j, k, n1, n2, n3, n_other, n_last, rank, last_dim; ^ fields.c:1329:31: warning: variable 'n_other' set but not used [-Wunused-but-set-variable] int i, j, k, n1, n2, n3, n_other, n_last, rank, last_dim; ^ gcc-fsf-4.8 -c -DHAVE_CONFIG_H -DCTL_SCM='"'/sw/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/sw/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/sw/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic epsilon_file.c -o epsilon_file.o In file included from /sw/include/hdf5.h:45:0, from ../src/matrixio/matrixio.h:24, from epsilon_file.c:36: /sw/include/H5FDlog.h:65:81: warning: ISO C90 does not support 'long long' [-Wlong-long] H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size); ^ In file included from /sw/include/libguile/__scm.h:52:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from epsilon_file.c:39: /sw/include/libguile/scmconfig.h:83:14: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef long long long_long; ^ /sw/include/libguile/scmconfig.h:84:23: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef unsigned long long ulong_long; ^ In file included from /sw/include/libguile.h:116:0, from /sw/include/ctl.h:28, from epsilon_file.c:39: /sw/include/libguile/discouraged.h:93:37: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_long_long2num (long long sl); ^ /sw/include/libguile/discouraged.h:94:47: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_ulong_long2num (unsigned long long sl); ^ /sw/include/libguile/discouraged.h:95:14: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API long long scm_num2long_long (SCM num, unsigned long int pos, ^ /sw/include/libguile/discouraged.h:97:23: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API unsigned long long scm_num2ulong_long (SCM num, unsigned long int pos, ^ gcc-fsf-4.8 -c -DHAVE_CONFIG_H -DCTL_SCM='"'/sw/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/sw/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/sw/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic matrix-smob.c -o matrix-smob.o In file included from /sw/include/hdf5.h:45:0, from ../src/matrixio/matrixio.h:24, from matrix-smob.c:26: /sw/include/H5FDlog.h:65:81: warning: ISO C90 does not support 'long long' [-Wlong-long] H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size); ^ In file included from /sw/include/libguile/__scm.h:52:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from ctl-io.h:7, from matrix-smob.h:21, from matrix-smob.c:28: /sw/include/libguile/scmconfig.h:83:14: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef long long long_long; ^ /sw/include/libguile/scmconfig.h:84:23: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef unsigned long long ulong_long; ^ In file included from /sw/include/libguile.h:116:0, from /sw/include/ctl.h:28, from ctl-io.h:7, from matrix-smob.h:21, from matrix-smob.c:28: /sw/include/libguile/discouraged.h:93:37: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_long_long2num (long long sl); ^ /sw/include/libguile/discouraged.h:94:47: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_ulong_long2num (unsigned long long sl); ^ /sw/include/libguile/discouraged.h:95:14: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API long long scm_num2long_long (SCM num, unsigned long int pos, ^ /sw/include/libguile/discouraged.h:97:23: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API unsigned long long scm_num2ulong_long (SCM num, unsigned long int pos, ^ matrix-smob.c: In function 'evectmatrix_p': matrix-smob.c:41:6: warning: implicit declaration of function 'gh_bool2scm' [-Wimplicit-function-declaration] return gh_bool2scm(EVECTMATRIX_P(obj)); ^ In file included from /sw/include/libguile/__scm.h:382:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from ctl-io.h:7, from matrix-smob.h:21, from matrix-smob.c:28: /sw/include/libguile/tags.h:483:68: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define SCM_TYP16_PREDICATE(tag, x) (!SCM_IMP (x) && SCM_TYP16 (x) == (tag)) ^ /sw/include/libguile/smob.h:107:38: note: in expansion of macro 'SCM_TYP16_PREDICATE' #define SCM_SMOB_PREDICATE(tag, obj) SCM_TYP16_PREDICATE (tag, obj) ^ my-smob.h:50:26: note: in expansion of macro 'SCM_SMOB_PREDICATE' # define T_SMOB_P(T, X) SCM_SMOB_PREDICATE(scm_tc16_smob_ ## T, X) ^ matrix-smob.h:29:26: note: in expansion of macro 'T_SMOB_P' #define EVECTMATRIX_P(X) T_SMOB_P(evectmatrix, X) ^ matrix-smob.c:41:25: note: in expansion of macro 'EVECTMATRIX_P' return gh_bool2scm(EVECTMATRIX_P(obj)); ^ matrix-smob.c:41:6: warning: return makes pointer from integer without a cast [enabled by default] return gh_bool2scm(EVECTMATRIX_P(obj)); ^ In file included from /sw/include/libguile/__scm.h:382:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from ctl-io.h:7, from matrix-smob.h:21, from matrix-smob.c:28: matrix-smob.c: In function 'sqmatrix_p': /sw/include/libguile/tags.h:483:68: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define SCM_TYP16_PREDICATE(tag, x) (!SCM_IMP (x) && SCM_TYP16 (x) == (tag)) ^ /sw/include/libguile/smob.h:107:38: note: in expansion of macro 'SCM_TYP16_PREDICATE' #define SCM_SMOB_PREDICATE(tag, obj) SCM_TYP16_PREDICATE (tag, obj) ^ my-smob.h:50:26: note: in expansion of macro 'SCM_SMOB_PREDICATE' # define T_SMOB_P(T, X) SCM_SMOB_PREDICATE(scm_tc16_smob_ ## T, X) ^ matrix-smob.h:33:23: note: in expansion of macro 'T_SMOB_P' #define SQMATRIX_P(X) T_SMOB_P(sqmatrix, X) ^ matrix-smob.c:82:25: note: in expansion of macro 'SQMATRIX_P' return gh_bool2scm(SQMATRIX_P(obj)); ^ matrix-smob.c:82:6: warning: return makes pointer from integer without a cast [enabled by default] return gh_bool2scm(SQMATRIX_P(obj)); ^ In file included from /sw/include/libguile/__scm.h:382:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from ctl-io.h:7, from matrix-smob.h:21, from matrix-smob.c:28: matrix-smob.c: In function 'assert_sqmatrix_smob': /sw/include/libguile/tags.h:483:68: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define SCM_TYP16_PREDICATE(tag, x) (!SCM_IMP (x) && SCM_TYP16 (x) == (tag)) ^ /sw/include/libguile/smob.h:107:38: note: in expansion of macro 'SCM_TYP16_PREDICATE' #define SCM_SMOB_PREDICATE(tag, obj) SCM_TYP16_PREDICATE (tag, obj) ^ my-smob.h:50:26: note: in expansion of macro 'SCM_SMOB_PREDICATE' # define T_SMOB_P(T, X) SCM_SMOB_PREDICATE(scm_tc16_smob_ ## T, X) ^ my-smob.h:66:28: note: in expansion of macro 'T_SMOB_P' #define SAFE_T_SMOB(T, X) (T_SMOB_P(T,X) ? T_SMOB(T,X) : NULL) ^ matrix-smob.h:35:26: note: in expansion of macro 'SAFE_T_SMOB' #define SAFE_SQMATRIX(X) SAFE_T_SMOB(sqmatrix, X) ^ matrix-smob.c:183:20: note: in expansion of macro 'SAFE_SQMATRIX' sqmatrix *m = SAFE_SQMATRIX(mo); ^ matrix-smob.c: In function 'assert_evectmatrix_smob': /sw/include/libguile/tags.h:483:68: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define SCM_TYP16_PREDICATE(tag, x) (!SCM_IMP (x) && SCM_TYP16 (x) == (tag)) ^ /sw/include/libguile/smob.h:107:38: note: in expansion of macro 'SCM_TYP16_PREDICATE' #define SCM_SMOB_PREDICATE(tag, obj) SCM_TYP16_PREDICATE (tag, obj) ^ my-smob.h:50:26: note: in expansion of macro 'SCM_SMOB_PREDICATE' # define T_SMOB_P(T, X) SCM_SMOB_PREDICATE(scm_tc16_smob_ ## T, X) ^ my-smob.h:66:28: note: in expansion of macro 'T_SMOB_P' #define SAFE_T_SMOB(T, X) (T_SMOB_P(T,X) ? T_SMOB(T,X) : NULL) ^ matrix-smob.h:31:29: note: in expansion of macro 'SAFE_T_SMOB' #define SAFE_EVECTMATRIX(X) SAFE_T_SMOB(evectmatrix, X) ^ matrix-smob.c:190:23: note: in expansion of macro 'SAFE_EVECTMATRIX' evectmatrix *m = SAFE_EVECTMATRIX(mo); ^ matrix-smob.c: At top level: matrix-smob.c:33:12: warning: 'mark_null' defined but not used [-Wunused-function] static SCM mark_null(SCM obj) { (void) obj; return SCM_BOOL_F; } ^ gcc-fsf-4.8 -c -DHAVE_CONFIG_H -DCTL_SCM='"'/sw/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/sw/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/sw/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic field-smob.c -o field-smob.o In file included from /sw/include/libguile/__scm.h:52:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from ctl-io.h:7, from field-smob.h:21, from field-smob.c:27: /sw/include/libguile/scmconfig.h:83:14: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef long long long_long; ^ /sw/include/libguile/scmconfig.h:84:23: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef unsigned long long ulong_long; ^ In file included from /sw/include/libguile.h:116:0, from /sw/include/ctl.h:28, from ctl-io.h:7, from field-smob.h:21, from field-smob.c:27: /sw/include/libguile/discouraged.h:93:37: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_long_long2num (long long sl); ^ /sw/include/libguile/discouraged.h:94:47: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_ulong_long2num (unsigned long long sl); ^ /sw/include/libguile/discouraged.h:95:14: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API long long scm_num2long_long (SCM num, unsigned long int pos, ^ /sw/include/libguile/discouraged.h:97:23: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API unsigned long long scm_num2ulong_long (SCM num, unsigned long int pos, ^ field-smob.c: In function 'field_p': field-smob.c:40:6: warning: implicit declaration of function 'gh_bool2scm' [-Wimplicit-function-declaration] return gh_bool2scm(FIELD_P(obj)); ^ In file included from /sw/include/libguile/__scm.h:382:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from ctl-io.h:7, from field-smob.h:21, from field-smob.c:27: /sw/include/libguile/tags.h:483:68: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define SCM_TYP16_PREDICATE(tag, x) (!SCM_IMP (x) && SCM_TYP16 (x) == (tag)) ^ /sw/include/libguile/smob.h:107:38: note: in expansion of macro 'SCM_TYP16_PREDICATE' #define SCM_SMOB_PREDICATE(tag, obj) SCM_TYP16_PREDICATE (tag, obj) ^ my-smob.h:50:26: note: in expansion of macro 'SCM_SMOB_PREDICATE' # define T_SMOB_P(T, X) SCM_SMOB_PREDICATE(scm_tc16_smob_ ## T, X) ^ field-smob.h:44:20: note: in expansion of macro 'T_SMOB_P' #define FIELD_P(X) T_SMOB_P(field_smob, X) ^ field-smob.c:40:25: note: in expansion of macro 'FIELD_P' return gh_bool2scm(FIELD_P(obj)); ^ field-smob.c:40:6: warning: return makes pointer from integer without a cast [enabled by default] return gh_bool2scm(FIELD_P(obj)); ^ In file included from /sw/include/libguile/__scm.h:382:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from ctl-io.h:7, from field-smob.h:21, from field-smob.c:27: field-smob.c: In function 'rscalar_field_p': /sw/include/libguile/tags.h:483:68: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define SCM_TYP16_PREDICATE(tag, x) (!SCM_IMP (x) && SCM_TYP16 (x) == (tag)) ^ /sw/include/libguile/smob.h:107:38: note: in expansion of macro 'SCM_TYP16_PREDICATE' #define SCM_SMOB_PREDICATE(tag, obj) SCM_TYP16_PREDICATE (tag, obj) ^ my-smob.h:50:26: note: in expansion of macro 'SCM_SMOB_PREDICATE' # define T_SMOB_P(T, X) SCM_SMOB_PREDICATE(scm_tc16_smob_ ## T, X) ^ field-smob.h:44:20: note: in expansion of macro 'T_SMOB_P' #define FIELD_P(X) T_SMOB_P(field_smob, X) ^ field-smob.h:48:29: note: in expansion of macro 'FIELD_P' #define RSCALAR_FIELD_P(X) (FIELD_P(X) && ((FIELD(X))->type == RSCALAR_FIELD_SMOB)) ^ field-smob.c:45:25: note: in expansion of macro 'RSCALAR_FIELD_P' return gh_bool2scm(RSCALAR_FIELD_P(obj)); ^ field-smob.c:45:6: warning: return makes pointer from integer without a cast [enabled by default] return gh_bool2scm(RSCALAR_FIELD_P(obj)); ^ In file included from /sw/include/libguile/__scm.h:382:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from ctl-io.h:7, from field-smob.h:21, from field-smob.c:27: field-smob.c: In function 'cvector_field_p': /sw/include/libguile/tags.h:483:68: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define SCM_TYP16_PREDICATE(tag, x) (!SCM_IMP (x) && SCM_TYP16 (x) == (tag)) ^ /sw/include/libguile/smob.h:107:38: note: in expansion of macro 'SCM_TYP16_PREDICATE' #define SCM_SMOB_PREDICATE(tag, obj) SCM_TYP16_PREDICATE (tag, obj) ^ my-smob.h:50:26: note: in expansion of macro 'SCM_SMOB_PREDICATE' # define T_SMOB_P(T, X) SCM_SMOB_PREDICATE(scm_tc16_smob_ ## T, X) ^ field-smob.h:44:20: note: in expansion of macro 'T_SMOB_P' #define FIELD_P(X) T_SMOB_P(field_smob, X) ^ field-smob.h:49:29: note: in expansion of macro 'FIELD_P' #define CVECTOR_FIELD_P(X) (FIELD_P(X) && ((FIELD(X))->type == CVECTOR_FIELD_SMOB)) ^ field-smob.c:50:25: note: in expansion of macro 'CVECTOR_FIELD_P' return gh_bool2scm(CVECTOR_FIELD_P(obj)); ^ field-smob.c:50:6: warning: return makes pointer from integer without a cast [enabled by default] return gh_bool2scm(CVECTOR_FIELD_P(obj)); ^ field-smob.c: In function 'cur_fieldp': field-smob.c:160:4: warning: implicit declaration of function 'gh_symbol2newstr' [-Wimplicit-function-declaration] char *s = gh_symbol2newstr(obj, NULL); ^ field-smob.c:160:14: warning: initialization makes pointer from integer without a cast [enabled by default] char *s = gh_symbol2newstr(obj, NULL); ^ In file included from /sw/include/libguile/__scm.h:382:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from ctl-io.h:7, from field-smob.h:21, from field-smob.c:27: field-smob.c: In function 'assert_field_smob': /sw/include/libguile/tags.h:483:68: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define SCM_TYP16_PREDICATE(tag, x) (!SCM_IMP (x) && SCM_TYP16 (x) == (tag)) ^ /sw/include/libguile/smob.h:107:38: note: in expansion of macro 'SCM_TYP16_PREDICATE' #define SCM_SMOB_PREDICATE(tag, obj) SCM_TYP16_PREDICATE (tag, obj) ^ my-smob.h:50:26: note: in expansion of macro 'SCM_SMOB_PREDICATE' # define T_SMOB_P(T, X) SCM_SMOB_PREDICATE(scm_tc16_smob_ ## T, X) ^ my-smob.h:66:28: note: in expansion of macro 'T_SMOB_P' #define SAFE_T_SMOB(T, X) (T_SMOB_P(T,X) ? T_SMOB(T,X) : NULL) ^ field-smob.h:46:65: note: in expansion of macro 'SAFE_T_SMOB' #define SAFE_FIELD(X) (cur_fieldp(X) ? update_curfield_smob() : SAFE_T_SMOB(field_smob, X)) ^ field-smob.c:172:22: note: in expansion of macro 'SAFE_FIELD' field_smob *f = SAFE_FIELD(fo); ^ field-smob.c: In function 'field_mapLB': field-smob.c:303:4: warning: implicit declaration of function 'gh_double2scm' [-Wimplicit-function-declaration] item = gh_double2scm(ps[j]->f.rs[i]); ^ field-smob.c:303:9: warning: assignment makes pointer from integer without a cast [enabled by default] item = gh_double2scm(ps[j]->f.rs[i]); ^ field-smob.c:315:6: warning: implicit declaration of function 'gh_scm2double' [-Wimplicit-function-declaration] pd->f.rs[i] = gh_scm2double(result); ^ field-smob.c: In function 'integrate_fieldL': field-smob.c:495:14: warning: assignment makes pointer from integer without a cast [enabled by default] item = gh_double2scm(pf[ifield]->f.rs[index]); ^ field-smob.c:351:54: warning: variable 'last_dim' set but not used [-Wunused-but-set-variable] int i, j, k, n1, n2, n3, n_other, n_last, rank, last_dim; ^ field-smob.c:351:48: warning: variable 'rank' set but not used [-Wunused-but-set-variable] int i, j, k, n1, n2, n3, n_other, n_last, rank, last_dim; ^ field-smob.c:351:40: warning: variable 'n_last' set but not used [-Wunused-but-set-variable] int i, j, k, n1, n2, n3, n_other, n_last, rank, last_dim; ^ field-smob.c:351:31: warning: variable 'n_other' set but not used [-Wunused-but-set-variable] int i, j, k, n1, n2, n3, n_other, n_last, rank, last_dim; ^ field-smob.c: At top level: field-smob.c:32:12: warning: 'mark_null' defined but not used [-Wunused-function] static SCM mark_null(SCM obj) { (void) obj; return SCM_BOOL_F; } ^ field-smob.c:339:17: warning: 'cvector3_conj' defined but not used [-Wunused-function] static cvector3 cvector3_conj(cvector3 c) ^ cp -f /sw/share/libctl/utils/geom.c geom.c gcc-fsf-4.8 -c -DHAVE_CONFIG_H -DCTL_SCM='"'/sw/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/sw/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/sw/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic geom.c -o geom.o In file included from /sw/include/libguile/__scm.h:52:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from ctl-io.h:7, from geom.c:26: /sw/include/libguile/scmconfig.h:83:14: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef long long long_long; ^ /sw/include/libguile/scmconfig.h:84:23: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef unsigned long long ulong_long; ^ In file included from /sw/include/libguile.h:116:0, from /sw/include/ctl.h:28, from ctl-io.h:7, from geom.c:26: /sw/include/libguile/discouraged.h:93:37: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_long_long2num (long long sl); ^ /sw/include/libguile/discouraged.h:94:47: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_ulong_long2num (unsigned long long sl); ^ /sw/include/libguile/discouraged.h:95:14: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API long long scm_num2long_long (SCM num, unsigned long int pos, ^ /sw/include/libguile/discouraged.h:97:23: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API unsigned long long scm_num2ulong_long (SCM num, unsigned long int pos, ^ gcc-fsf-4.8 -L/sw/lib -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic main.o ctl-io.o mpb.o epsilon.o fields.o epsilon_file.o matrix-smob.o field-smob.o geom.o ../src/maxwell/maxwell.a ../src/matrixio/matrixio.a ../src/matrices/matrices.a ../src/util/util.a -lctl -I/sw/include -D_THREAD_SAFE -L/sw/lib -lguile -lltdl -L/sw/lib -lgmp -lm -lltdl -lhdf5 -lz -framework vecLib -framework vecLib -ldfftw -lm -lgfortranbegin -lgfortran -o .mpb rm -f mpb echo '#!/bin/sh' > mpb echo `pwd`/.mpb --spec-file=`pwd`/mpb.scm '$*' >> mpb chmod u+x mpb rm -f mpb-split-tmp mpb_name=`echo mpb | sed 's,x,x,'`; \ sed "s%\./mpb%"/sw/bin/"$mpb_name%g" mpb-split > mpb-split-tmp; Making all in utils gcc-fsf-4.8 -DHAVE_CONFIG_H -DMPB_VERSION='"'"1.4.2"'"' -I../src/util -I../src/matrices -I../src/matrixio -DH5_USE_16_API=1 -MD -I/sw/include -I/sw/include -I/sw/include -D_THREAD_SAFE -c -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic mpb-data.c -o mpb-data.o In file included from /sw/include/libguile/__scm.h:52:0, from /sw/include/libguile.h:30, from /sw/include/ctl.h:28, from mpb-data.c:24: /sw/include/libguile/scmconfig.h:83:14: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef long long long_long; ^ /sw/include/libguile/scmconfig.h:84:23: warning: ISO C90 does not support 'long long' [-Wlong-long] typedef unsigned long long ulong_long; ^ In file included from /sw/include/libguile.h:116:0, from /sw/include/ctl.h:28, from mpb-data.c:24: /sw/include/libguile/discouraged.h:93:37: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_long_long2num (long long sl); ^ /sw/include/libguile/discouraged.h:94:47: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API SCM scm_ulong_long2num (unsigned long long sl); ^ /sw/include/libguile/discouraged.h:95:14: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API long long scm_num2long_long (SCM num, unsigned long int pos, ^ /sw/include/libguile/discouraged.h:97:23: warning: ISO C90 does not support 'long long' [-Wlong-long] SCM_API unsigned long long scm_num2ulong_long (SCM num, unsigned long int pos, ^ In file included from /sw/include/hdf5.h:45:0, from ../src/matrixio/matrixio.h:24, from mpb-data.c:29: /sw/include/H5FDlog.h:65:81: warning: ISO C90 does not support 'long long' [-Wlong-long] H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size); ^ mpb-data.c: In function 'usage': mpb-data.c:551:4: warning: string length '761' is greater than the length '509' ISO C90 compilers are required to support [-Woverlength-strings] ); ^ gcc-fsf-4.8 -g -O2 -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic -L/sw/lib mpb-data.o ../src/matrixio/matrixio.a ../src/matrices/matrices.a ../src/util/util.a -lctl -I/sw/include -D_THREAD_SAFE -L/sw/lib -lguile -lltdl -L/sw/lib -lgmp -lm -lltdl -lhdf5 -lz -framework vecLib -framework vecLib -ldfftw -lm -lgfortranbegin -lgfortran -o mpb-data fink-package-precedence --depfile-ext='\.d' . Scanning /\.d$/ dependency files... ./mpb-ctl/ctl-io.d ./mpb-ctl/epsilon.d ./mpb-ctl/epsilon_file.d ./mpb-ctl/field-smob.d ./mpb-ctl/fields.d ./mpb-ctl/geom.d ./mpb-ctl/main.d ./mpb-ctl/matrix-smob.d ./mpb-ctl/mpb.d ./src/matrices/blasglue.d ./src/matrices/eigensolver.d ./src/matrices/eigensolver_davidson.d ./src/matrices/eigensolver_utils.d ./src/matrices/evectmatrix.d ./src/matrices/linmin.d ./src/matrices/matrices.d ./src/matrices/minpack2-linmin.d ./src/matrices/sqmatrix.d ./src/matrixio/evectmatrixio.d ./src/matrixio/fieldio.d ./src/matrixio/matrixio.d ./src/maxwell/maxwell.d ./src/maxwell/maxwell_constraints.d ./src/maxwell/maxwell_eps.d ./src/maxwell/maxwell_op.d ./src/maxwell/maxwell_pre.d ./src/util/debug_malloc.d ./src/util/mpi_utils.d ./tests/blastest.d ./tests/eigs_test.d ./tests/malloctest.d ./tests/maxwell_test.d ./tests/normal_vectors.d ./utils/mpb-data.d Looking for incorrect headers in 34 dependency files... Determining fink providers of 138 headers... 1 - 100 101 - 138 Found use of headers from 6 fink packages: fftw gcc48-compiler gmp5 guile18-dev hdf5.8 libctl Scanning binaries for incorrect dyld linking... /bin/rm -rf /sw/build.build/root-mpb-1.4.2-1030 /bin/mkdir -p /sw/build.build/root-mpb-1.4.2-1030/sw /bin/mkdir -p /sw/build.build/root-mpb-1.4.2-1030/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-mpb-1.4.2-1030 sudo -u fink-bld [ENV] sh -c /tmp/fink.iaOMI make -j1 install prefix=/sw/build.build/root-mpb-1.4.2-1030/sw Making install in mpb-ctl /usr/bin/install -c -d /sw/build.build/root-mpb-1.4.2-1030/sw/bin /usr/bin/install -c -m 0755 -s .mpb /sw/build.build/root-mpb-1.4.2-1030/sw/bin/`echo mpb|sed 's,x,x,'` /usr/bin/install -c -d /sw/build.build/root-mpb-1.4.2-1030/sw/share/libctl/specs /usr/bin/install -c -m 0644 mpb.scm /sw/build.build/root-mpb-1.4.2-1030/sw/share/libctl/specs /usr/bin/install -c -d /sw/build.build/root-mpb-1.4.2-1030/sw/share/man/man1 /usr/bin/install -c -m 0644 mpb.1 /sw/build.build/root-mpb-1.4.2-1030/sw/share/man/man1 mpb_name=`echo mpb | sed 's,x,x,'`; \ /usr/bin/install -c -m 0755 mpb-split-tmp /sw/build.build/root-mpb-1.4.2-1030/sw/bin/${mpb_name}-split /usr/bin/install -c -d /sw/build.build/root-mpb-1.4.2-1030/sw/share/man/man1 /usr/bin/install -c -m 0644 mpb-split.1 /sw/build.build/root-mpb-1.4.2-1030/sw/share/man/man1 Making install in utils /usr/bin/install -c -d /sw/build.build/root-mpb-1.4.2-1030/sw/bin /usr/bin/install -c -m 0755 -s mpb-data /sw/build.build/root-mpb-1.4.2-1030/sw/bin/`echo mpb-data|sed 's,x,x,'` /usr/bin/install -c -d /sw/build.build/root-mpb-1.4.2-1030/sw/share/man/man1 /usr/bin/install -c -m 0644 mpb-data.1 /sw/build.build/root-mpb-1.4.2-1030/sw/share/man/man1 sudo -u fink-bld [ENV] sh -c /tmp/fink.kF_Vd /usr/bin/install -d -m 700 /sw/build.build/root-mpb-1.4.2-1030/sw/share/doc/mpb /bin/cp -r AUTHORS /sw/build.build/root-mpb-1.4.2-1030/sw/share/doc/mpb/ /bin/cp -r COPYING /sw/build.build/root-mpb-1.4.2-1030/sw/share/doc/mpb/ /bin/cp -r COPYRIGHT /sw/build.build/root-mpb-1.4.2-1030/sw/share/doc/mpb/ /bin/cp -r ChangeLog /sw/build.build/root-mpb-1.4.2-1030/sw/share/doc/mpb/ /bin/cp -r NEWS /sw/build.build/root-mpb-1.4.2-1030/sw/share/doc/mpb/ /bin/cp -r README /sw/build.build/root-mpb-1.4.2-1030/sw/share/doc/mpb/ /bin/cp -r doc /sw/build.build/root-mpb-1.4.2-1030/sw/share/doc/mpb/ /bin/cp -r mpb-ctl/examples /sw/build.build/root-mpb-1.4.2-1030/sw/share/doc/mpb/ /bin/chmod -R go=u-w /sw/build.build/root-mpb-1.4.2-1030/sw/share/doc/mpb /bin/rm -f /sw/build.build/root-mpb-1.4.2-1030/sw/info/dir /sw/build.build/root-mpb-1.4.2-1030/sw/info/dir.old /sw/build.build/root-mpb-1.4.2-1030/sw/share/info/dir /sw/build.build/root-mpb-1.4.2-1030/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-mpb-1.4.2-1030 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `mpb' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/mpb_1.4.2-1030_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-mpb-1.4.2-1030 (Reading database ... 10559 files and directories currently installed.) Removing fink-buildlock-mpb-1.4.2-1030 ...