printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild nco 2>&1 The package 'nco' will be built without being installed. Reading build dependency for nco-4.4.4-1... Reading dependency for nco-4.4.4-1... Reading dependency for nco444-shlibs-4.4.4-1... Reading dependency for nco444-dev-4.4.4-1... Reading build conflict for nco-4.4.4-1... fink needs help picking an alternative to satisfy a virtual dependency. The candidates: (1) texinfo-legacy: GNU documentation system (legacy support) (2) texinfo: GNU documentation system Pick one: [1] (assuming default) The package 'antlr' will be installed. Reading dependency for antlr-2.7.7-1034... Reading runtime dependency for antlr-2.7.7-1034... The package 'gsl' will be installed. Reading dependency for gsl-1.16-1... Reading runtime dependency for gsl-1.16-1... The package 'udunits2-dev' will be installed. Reading dependency for udunits2-dev-2.2.16-1... Reading runtime dependency for udunits2-dev-2.2.16-1... The package 'fink-package-precedence' will be installed. Reading dependency for fink-package-precedence-0.18-1... Reading runtime dependency for fink-package-precedence-0.18-1... The package 'netcdf-c7' will be installed. Reading dependency for netcdf-c7-4.3.2-2... Reading runtime dependency for netcdf-c7-4.3.2-2... The package 'netcdf-bin' will be installed. Reading dependency for netcdf-bin-4.3.2-2... Reading runtime dependency for netcdf-bin-4.3.2-2... The package 'texinfo-legacy' will be installed. Reading dependency for texinfo-legacy-4.13-1... Reading runtime dependency for texinfo-legacy-4.13-1... The package 'gsl-shlibs' will be installed. Reading dependency for gsl-shlibs-1.16-1... Reading runtime dependency for gsl-shlibs-1.16-1... The package 'netcdf-c7-shlibs' will be installed. Reading dependency for netcdf-c7-shlibs-4.3.2-2... Reading runtime dependency for netcdf-c7-shlibs-4.3.2-2... The package 'udunits2-shlibs' will be installed. Reading dependency for udunits2-shlibs-2.2.16-1... Reading runtime dependency for udunits2-shlibs-2.2.16-1... The package 'hdf5.8-shlibs' will be installed. Reading dependency for hdf5.8-shlibs-1.8.13-1... Reading runtime dependency for hdf5.8-shlibs-1.8.13-1... The package 'libcurl4-shlibs' will be installed. Reading dependency for libcurl4-shlibs-7.37.1-1+10.8... Reading runtime dependency for libcurl4-shlibs-7.37.1-1+10.8... The package 'expat1-shlibs' will be installed. Reading dependency for expat1-shlibs-2.1.0-1... Reading runtime dependency for expat1-shlibs-2.1.0-1... The package 'szip-shlibs' will be installed. Reading dependency for szip-shlibs-2.1-3... Reading runtime dependency for szip-shlibs-2.1-3... The package 'librtmp-shlibs' will be installed. Reading dependency for librtmp-shlibs-2.3-4... Reading runtime dependency for librtmp-shlibs-2.3-4... The package 'libssh2.1-shlibs' will be installed. Reading dependency for libssh2.1-shlibs-1.4.3-1... Reading runtime dependency for libssh2.1-shlibs-1.4.3-1... The package 'openssl100-shlibs' will be installed. Reading dependency for openssl100-shlibs-1.0.1h-1... Reading runtime dependency for openssl100-shlibs-1.0.1h-1... The following package will be rebuilt: nco The following 17 additional packages will be installed: antlr expat1-shlibs fink-package-precedence gsl gsl-shlibs hdf5.8-shlibs libcurl4-shlibs librtmp-shlibs libssh2.1-shlibs netcdf-bin netcdf-c7 netcdf-c7-shlibs openssl100-shlibs szip-shlibs texinfo-legacy udunits2-dev udunits2-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/nco-4.4.4.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 1 7664k 1 125k 0 0 166k 0 0:00:46 --:--:-- 0:00:46 165k 7 7664k 7 552k 0 0 314k 0 0:00:24 0:00:01 0:00:23 314k 12 7664k 12 968k 0 0 325k 0 0:00:23 0:00:02 0:00:21 325k 15 7664k 15 1211k 0 0 319k 0 0:00:24 0:00:03 0:00:21 319k 19 7664k 19 1505k 0 0 316k 0 0:00:24 0:00:04 0:00:20 316k 25 7664k 25 1935k 0 0 336k 0 0:00:22 0:00:05 0:00:17 362k 29 7664k 29 2291k 0 0 324k 0 0:00:23 0:00:07 0:00:16 328k 31 7664k 31 2376k 0 0 306k 0 0:00:25 0:00:07 0:00:18 294k 38 7664k 38 2936k 0 0 335k 0 0:00:22 0:00:08 0:00:14 347k 44 7664k 44 3379k 0 0 346k 0 0:00:22 0:00:09 0:00:13 374k 49 7664k 49 3819k 0 0 348k 0 0:00:21 0:00:10 0:00:11 362k 54 7664k 54 4169k 0 0 354k 0 0:00:21 0:00:11 0:00:10 399k 60 7664k 60 4620k 0 0 362k 0 0:00:21 0:00:12 0:00:09 449k 66 7664k 66 5121k 0 0 372k 0 0:00:20 0:00:13 0:00:07 437k 72 7664k 72 5575k 0 0 373k 0 0:00:20 0:00:14 0:00:06 424k 77 7664k 77 5923k 0 0 375k 0 0:00:20 0:00:15 0:00:05 437k 83 7664k 83 6363k 0 0 379k 0 0:00:20 0:00:16 0:00:04 438k 89 7664k 89 6863k 0 0 386k 0 0:00:19 0:00:17 0:00:02 448k 93 7664k 93 7139k 0 0 374k 0 0:00:20 0:00:19 0:00:01 380k 94 7664k 94 7253k 0 0 367k 0 0:00:20 0:00:19 0:00:01 348k 100 7664k 100 7664k 0 0 375k 0 0:00:20 0:00:20 --:--:-- 372k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/antlr_2.7.7-1034_darwin-x86_64.deb Selecting previously deselected package antlr. (Reading database ... 4296 files and directories currently installed.) Unpacking antlr (from .../antlr_2.7.7-1034_darwin-x86_64.deb) ... Setting up antlr (2.7.7-1034) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb Selecting previously deselected package expat1-shlibs. (Reading database ... 5303 files and directories currently installed.) Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ... Setting up expat1-shlibs (2.1.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/fink-package-precedence_0.18-1_darwin-x86_64.deb Selecting previously deselected package fink-package-precedence. (Reading database ... 5308 files and directories currently installed.) Unpacking fink-package-precedence (from .../fink-package-precedence_0.18-1_darwin-x86_64.deb) ... Setting up fink-package-precedence (0.18-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/gsl_1.16-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/gsl-shlibs_1.16-1_darwin-x86_64.deb Selecting previously deselected package gsl. (Reading database ... 5309 files and directories currently installed.) Unpacking gsl (from .../gsl_1.16-1_darwin-x86_64.deb) ... Selecting previously deselected package gsl-shlibs. Unpacking gsl-shlibs (from .../gsl-shlibs_1.16-1_darwin-x86_64.deb) ... Setting up gsl-shlibs (1.16-1) ... Setting up gsl (1.16-1) ... Clearing dependency_libs of .la files being installed * gsl-ref: (gsl-ref). GNU Scientific Library - Reference install-info(/sw/share/info/gsl-ref.info): creating new section `Software libraries' Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb Selecting previously deselected package openssl100-shlibs. (Reading database ... 5559 files and directories currently installed.) Unpacking openssl100-shlibs (from .../openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb) ... Setting up openssl100-shlibs (1.0.1h-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/szip-shlibs_2.1-3_darwin-x86_64.deb Selecting previously deselected package szip-shlibs. (Reading database ... 5580 files and directories currently installed.) Unpacking szip-shlibs (from .../szip-shlibs_2.1-3_darwin-x86_64.deb) ... Setting up szip-shlibs (2.1-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/texinfo-legacy_4.13-1_darwin-x86_64.deb Selecting previously deselected package texinfo-legacy. (Reading database ... 5586 files and directories currently installed.) Unpacking texinfo-legacy (from .../texinfo-legacy_4.13-1_darwin-x86_64.deb) ... Setting up texinfo-legacy (4.13-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/udunits2-dev_2.2.16-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/udunits2-shlibs_2.2.16-1_darwin-x86_64.deb Selecting previously deselected package udunits2-dev. (Reading database ... 5703 files and directories currently installed.) Unpacking udunits2-dev (from .../udunits2-dev_2.2.16-1_darwin-x86_64.deb) ... Selecting previously deselected package udunits2-shlibs. Unpacking udunits2-shlibs (from .../udunits2-shlibs_2.2.16-1_darwin-x86_64.deb) ... Setting up udunits2-shlibs (2.2.16-1) ... Setting up udunits2-dev (2.2.16-1) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/hdf5.8-shlibs_1.8.13-1_darwin-x86_64.deb Selecting previously deselected package hdf5.8-shlibs. (Reading database ... 5719 files and directories currently installed.) Unpacking hdf5.8-shlibs (from .../hdf5.8-shlibs_1.8.13-1_darwin-x86_64.deb) ... Setting up hdf5.8-shlibs (1.8.13-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/net/librtmp-shlibs_2.3-4_darwin-x86_64.deb Selecting previously deselected package librtmp-shlibs. (Reading database ... 5729 files and directories currently installed.) Unpacking librtmp-shlibs (from .../librtmp-shlibs_2.3-4_darwin-x86_64.deb) ... Setting up librtmp-shlibs (2.3-4) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/net/libssh2.1-shlibs_1.4.3-1_darwin-x86_64.deb Selecting previously deselected package libssh2.1-shlibs. (Reading database ... 5734 files and directories currently installed.) Unpacking libssh2.1-shlibs (from .../libssh2.1-shlibs_1.4.3-1_darwin-x86_64.deb) ... Setting up libssh2.1-shlibs (1.4.3-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/net/libcurl4-shlibs_7.37.1-1+10.8_darwin-x86_64.deb Selecting previously deselected package libcurl4-shlibs. (Reading database ... 5742 files and directories currently installed.) Unpacking libcurl4-shlibs (from .../libcurl4-shlibs_7.37.1-1+10.8_darwin-x86_64.deb) ... Setting up libcurl4-shlibs (7.37.1-1+10.8) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/netcdf-c7_4.3.2-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/netcdf-c7-shlibs_4.3.2-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/netcdf-bin_4.3.2-2_darwin-x86_64.deb Selecting previously deselected package netcdf-c7. (Reading database ... 5748 files and directories currently installed.) Unpacking netcdf-c7 (from .../netcdf-c7_4.3.2-2_darwin-x86_64.deb) ... Selecting previously deselected package netcdf-c7-shlibs. Unpacking netcdf-c7-shlibs (from .../netcdf-c7-shlibs_4.3.2-2_darwin-x86_64.deb) ... Selecting previously deselected package netcdf-bin. Unpacking netcdf-bin (from .../netcdf-bin_4.3.2-2_darwin-x86_64.deb) ... Setting up netcdf-c7-shlibs (4.3.2-2) ... Setting up netcdf-bin (4.3.2-2) ... Setting up netcdf-c7 (4.3.2-2) ... Clearing dependency_libs of .la files being installed Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-nco-4.4.4-1 /sw/build.build dpkg-deb: building package `fink-buildlock-nco-4.4.4-1' in `/sw/build.build/fink-buildlock-nco-4.4.4-1_2014.07.25-23.38.03_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-nco-4.4.4-1_2014.07.25-23.38.03_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-nco-4.4.4-1. (Reading database ... 5804 files and directories currently installed.) Unpacking fink-buildlock-nco-4.4.4-1 (from .../fink-buildlock-nco-4.4.4-1_2014.07.25-23.38.03_darwin-x86_64.deb) ... Setting up fink-buildlock-nco-4.4.4-1 (2014.07.25-23.38.03) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.dtXEI env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/nco-4.4.4.tar.gz ./nco-4.4.4/ ./nco-4.4.4/src/ ./nco-4.4.4/src/nco/ ./nco-4.4.4/src/nco/nco_var_scv.h ./nco-4.4.4/src/nco/ncpdq.c ./nco-4.4.4/src/nco/nco_aux.c ./nco-4.4.4/src/nco/nco_cnk.h ./nco-4.4.4/src/nco/nco.h ./nco-4.4.4/src/nco/nco_mss_val.c ./nco-4.4.4/src/nco/nco_cnv_csm.h ./nco-4.4.4/src/nco/ncap_utl.c ./nco-4.4.4/src/nco/Makefile.in ./nco-4.4.4/src/nco/nco_msa.c ./nco-4.4.4/src/nco/nco_uthash.h ./nco-4.4.4/src/nco/nco_cnf_dmn.h ./nco-4.4.4/src/nco/mpncflint.c ./nco-4.4.4/src/nco/mpncwa.c ./nco-4.4.4/src/nco/nco_mpi.h ./nco-4.4.4/src/nco/nco_var_scv.c ./nco-4.4.4/src/nco/nco_rth_utl.h ./nco-4.4.4/src/nco/ncap.h ./nco-4.4.4/src/nco/nco_var_utl.c ./nco-4.4.4/src/nco/nco_var_utl.h ./nco-4.4.4/src/nco/nco_cnk.c ./nco-4.4.4/src/nco/nco_att_utl.c ./nco-4.4.4/src/nco/nco_cnv_arm.c ./nco-4.4.4/src/nco/mpncecat.c ./nco-4.4.4/src/nco/nco_rth_flt.h ./nco-4.4.4/src/nco/ncatted.c ./nco-4.4.4/src/nco/nco_pck.c ./nco-4.4.4/src/nco/nco_mmr.c ./nco-4.4.4/src/nco/nco_fl_utl.c ./nco-4.4.4/src/nco/ncrename.c ./nco-4.4.4/src/nco/ncap_yacc.y ./nco-4.4.4/src/nco/nco_grp_utl.h ./nco-4.4.4/src/nco/nco_ctl.c ./nco-4.4.4/src/nco/nco_fl_utl.h ./nco-4.4.4/src/nco/nco_mss_val.h ./nco-4.4.4/src/nco/nco_dbg.c ./nco-4.4.4/src/nco/ncap_lex.l ./nco-4.4.4/src/nco/nco_lst_utl.c ./nco-4.4.4/src/nco/nco_dmn_utl.c ./nco-4.4.4/src/nco/nco_ctl.h ./nco-4.4.4/src/nco/nco_typ.h ./nco-4.4.4/src/nco/nco_grp_utl.c ./nco-4.4.4/src/nco/nco_cln_utl.h ./nco-4.4.4/src/nco/ncecat.c ./nco-4.4.4/src/nco/nco_bnr.h ./nco-4.4.4/src/nco/ncap.c ./nco-4.4.4/src/nco/nco_scm.h ./nco-4.4.4/src/nco/nco_bnr.c ./nco-4.4.4/src/nco/nco_md5.c ./nco-4.4.4/src/nco/nco_mmr.h ./nco-4.4.4/src/nco/nco_var_lst.c ./nco-4.4.4/src/nco/nco_lmt.h ./nco-4.4.4/src/nco/nco_att_utl.h ./nco-4.4.4/src/nco/nco_srm.c ./nco-4.4.4/src/nco/ncks.c ./nco-4.4.4/src/nco/nco_netcdf.c ./nco-4.4.4/src/nco/nco_srm.h ./nco-4.4.4/src/nco/nco_rth_flt.c ./nco-4.4.4/src/nco/nco_getopt.h ./nco-4.4.4/src/nco/nco_grp_trv.h ./nco-4.4.4/src/nco/nco_aux.h ./nco-4.4.4/src/nco/nco_rec_var.h ./nco-4.4.4/src/nco/nco_rth_utl.c ./nco-4.4.4/src/nco/nco_msa.h ./nco-4.4.4/src/nco/mpncpdq.c ./nco-4.4.4/src/nco/mpncra.c ./nco-4.4.4/src/nco/nco_omp.h ./nco-4.4.4/src/nco/nco_cln_utl.c ./nco-4.4.4/src/nco/nco_dbg.h ./nco-4.4.4/src/nco/mpncbo.c ./nco-4.4.4/src/nco/nco_prn.h ./nco-4.4.4/src/nco/nco_md5.h ./nco-4.4.4/src/nco/nco_var_avg.c ./nco-4.4.4/src/nco/nco_cnf_typ.c ./nco-4.4.4/src/nco/nco_sng_utl.c ./nco-4.4.4/src/nco/nco_pck.h ./nco-4.4.4/src/nco/nco_scl_utl.h ./nco-4.4.4/src/nco/nco_scl_utl.c ./nco-4.4.4/src/nco/nco_var_rth.h ./nco-4.4.4/src/nco/nco_cnv_csm.c ./nco-4.4.4/src/nco/ncflint.c ./nco-4.4.4/src/nco/nco_dmn_utl.h ./nco-4.4.4/src/nco/nco_rec_var.c ./nco-4.4.4/src/nco/nco_omp.c ./nco-4.4.4/src/nco/nco_getopt.c ./nco-4.4.4/src/nco/nco_netcdf.h ./nco-4.4.4/src/nco/nco_cnf_typ.h ./nco-4.4.4/src/nco/nco_lst_utl.h ./nco-4.4.4/src/nco/nco_scm.c ./nco-4.4.4/src/nco/nco_var_avg.h ./nco-4.4.4/src/nco/nco_var_rth.c ./nco-4.4.4/src/nco/nco_grp_trv.c ./nco-4.4.4/src/nco/libnco.h ./nco-4.4.4/src/nco/nco_lmt.c ./nco-4.4.4/src/nco/nco_var_lst.h ./nco-4.4.4/src/nco/ncwa.c ./nco-4.4.4/src/nco/ncra.c ./nco-4.4.4/src/nco/nco_prn.c ./nco-4.4.4/src/nco/ncbo.c ./nco-4.4.4/src/nco/Makefile.am ./nco-4.4.4/src/nco/nco_cnv_arm.h ./nco-4.4.4/src/nco/nco_cnf_dmn.c ./nco-4.4.4/src/nco/nco_sng_utl.h ./nco-4.4.4/src/Makefile.in ./nco-4.4.4/src/nco_c++/ ./nco-4.4.4/src/nco_c++/Makefile.in ./nco-4.4.4/src/nco_c++/nco_var.cc ./nco-4.4.4/src/nco_c++/nco_utl.cc ./nco-4.4.4/src/nco_c++/nco_var.hh ./nco-4.4.4/src/nco_c++/nco_fl.cc ./nco-4.4.4/src/nco_c++/nco_hgh.cc ./nco-4.4.4/src/nco_c++/nco_utl.hh ./nco-4.4.4/src/nco_c++/Makefile.old ./nco-4.4.4/src/nco_c++/nco_hgh.hh ./nco-4.4.4/src/nco_c++/nco_fl.hh ./nco-4.4.4/src/nco_c++/nco_att.hh ./nco-4.4.4/src/nco_c++/README ./nco-4.4.4/src/nco_c++/libnco_c++.hh ./nco-4.4.4/src/nco_c++/nco_att.cc ./nco-4.4.4/src/nco_c++/nco_dmn.cc ./nco-4.4.4/src/nco_c++/INSTALL ./nco-4.4.4/src/nco_c++/ChangeLog ./nco-4.4.4/src/nco_c++/TODO ./nco-4.4.4/src/nco_c++/Makefile.am ./nco-4.4.4/src/nco_c++/tst.cc ./nco-4.4.4/src/nco_c++/nco_dmn.hh ./nco-4.4.4/src/nco++/ ./nco-4.4.4/src/nco++/NcapVar.cc ./nco-4.4.4/src/nco++/ncoParser.cpp ./nco-4.4.4/src/nco++/ncoEnumTokenTypes.hpp ./nco-4.4.4/src/nco++/Makefile.in ./nco-4.4.4/src/nco++/ncoLexer.cpp ./nco-4.4.4/src/nco++/sym_cls.cc ./nco-4.4.4/src/nco++/ncap2_utl.hh ./nco-4.4.4/src/nco++/nco_antlr_pst_prc.pl ./nco-4.4.4/src/nco++/vtl_cls.hh ./nco-4.4.4/src/nco++/fmc_cls.hh ./nco-4.4.4/src/nco++/fmc_all_cls.cc ./nco-4.4.4/src/nco++/sdo_utl.cc ./nco-4.4.4/src/nco++/ncoTree.hpp ./nco-4.4.4/src/nco++/NcapVarVector.cc ./nco-4.4.4/src/nco++/VarOp.hh ./nco-4.4.4/src/nco++/Makefile.old ./nco-4.4.4/src/nco++/ncoParserTokenTypes.hpp ./nco-4.4.4/src/nco++/Invoke.hh ./nco-4.4.4/src/nco++/prs_cls.cc ./nco-4.4.4/src/nco++/fmc_all_cls.hh ./nco-4.4.4/src/nco++/NcapVar.hh ./nco-4.4.4/src/nco++/ncoGrammer.g ./nco-4.4.4/src/nco++/ncoParser.hpp ./nco-4.4.4/src/nco++/prs_cls.hh ./nco-4.4.4/src/nco++/nco_gsl.c ./nco-4.4.4/src/nco++/NcapVector.hh ./nco-4.4.4/src/nco++/fmc_gsl_cls.hh ./nco-4.4.4/src/nco++/fmc_cls.cc ./nco-4.4.4/src/nco++/ncap2.hh ./nco-4.4.4/src/nco++/libnco++.hh ./nco-4.4.4/src/nco++/sym_cls.hh ./nco-4.4.4/src/nco++/ncap2.cc ./nco-4.4.4/src/nco++/Invoke.cc ./nco-4.4.4/src/nco++/sdo_utl.hh ./nco-4.4.4/src/nco++/map_srt_tmp.hh ./nco-4.4.4/src/nco++/fmc_gsl_cls.cc ./nco-4.4.4/src/nco++/ncoLexer.hpp ./nco-4.4.4/src/nco++/ncoTree.cpp ./nco-4.4.4/src/nco++/nco_gsl.h ./nco-4.4.4/src/nco++/NcapVarVector.hh ./nco-4.4.4/src/nco++/ncap2_utl.cc ./nco-4.4.4/src/nco++/Makefile.am ./nco-4.4.4/src/cuda/ ./nco-4.4.4/src/cuda/simpleTemplates_kernel.cu ./nco-4.4.4/src/cuda/simpleTemplates.cu ./nco-4.4.4/src/Makefile.am ./nco-4.4.4/Makefile.in ./nco-4.4.4/obj/ ./nco-4.4.4/configure ./nco-4.4.4/doc/ ./nco-4.4.4/doc/MANIFEST ./nco-4.4.4/doc/logo_pch.png ./nco-4.4.4/doc/Makefile.in ./nco-4.4.4/doc/nco_gsl.ods ./nco-4.4.4/doc/xmp/ ./nco-4.4.4/doc/xmp/cmb_fl.sh ./nco-4.4.4/doc/xmp/fgr2.png ./nco-4.4.4/doc/xmp/mcc.sh ./nco-4.4.4/doc/xmp/fgr2.txt ./nco-4.4.4/doc/xmp/glb_avg.sh ./nco-4.4.4/doc/xmp/pmt_crd.sh ./nco-4.4.4/doc/xmp/rgr.sh ./nco-4.4.4/doc/xmp/fgr3.eps ./nco-4.4.4/doc/xmp/crd.nco ./nco-4.4.4/doc/xmp/fgr3.png ./nco-4.4.4/doc/xmp/bi_interp.nco ./nco-4.4.4/doc/xmp/ann_avg.sh ./nco-4.4.4/doc/xmp/ann_avg_grp.sh ./nco-4.4.4/doc/xmp/fgr2.eps ./nco-4.4.4/doc/xmp/fgr1.txt ./nco-4.4.4/doc/xmp/fgr1.png ./nco-4.4.4/doc/xmp/fgr1.eps ./nco-4.4.4/doc/xmp/fgr3.txt ./nco-4.4.4/doc/xmp/mcc_grp.sh ./nco-4.4.4/doc/xmp/gsl_rgr.nco ./nco-4.4.4/doc/xmp/add_crd.sh ./nco-4.4.4/doc/xmp/grp.sh ./nco-4.4.4/doc/xmp/cmb_fl_grp.sh ./nco-4.4.4/doc/nco_qt_msvc.shtml ./nco-4.4.4/doc/dir ./nco-4.4.4/doc/logo_srl.svg ./nco-4.4.4/doc/logo_qt.png ./nco-4.4.4/doc/LICENSE ./nco-4.4.4/doc/logo_cog.png ./nco-4.4.4/doc/man_end.txt ./nco-4.4.4/doc/nco.texi ./nco-4.4.4/doc/nco_src_frg.txt ./nco-4.4.4/doc/debian.txt ./nco-4.4.4/doc/logo_cog_nmr.pdf ./nco-4.4.4/doc/AUTHORS ./nco-4.4.4/doc/nco_ltr_spp.txt ./nco-4.4.4/doc/insure.txt ./nco-4.4.4/doc/valgrind.txt ./nco-4.4.4/doc/opendap.sh ./nco-4.4.4/doc/nsf.png ./nco-4.4.4/doc/logo_vs2010.png ./nco-4.4.4/doc/cdtime.c ./nco-4.4.4/doc/.htaccess ./nco-4.4.4/doc/surfit.txt ./nco-4.4.4/doc/help.txt ./nco-4.4.4/doc/nco.dvi ./nco-4.4.4/doc/ncap.txt ./nco-4.4.4/doc/abs_igrid_2005.txt ./nco-4.4.4/doc/logo_nco_stk.png ./nco-4.4.4/doc/README_Fedora.txt ./nco-4.4.4/doc/nco.ps ./nco-4.4.4/doc/logo_cog_nmr.png ./nco-4.4.4/doc/surfit_2014.txt ./nco-4.4.4/doc/beta.txt ./nco-4.4.4/doc/README_msvc.txt ./nco-4.4.4/doc/index.shtml ./nco-4.4.4/doc/nco.html ./nco-4.4.4/doc/nco.txt ./nco-4.4.4/doc/tags_doc.sh ./nco-4.4.4/doc/mpi.txt ./nco-4.4.4/doc/nco_news.shtml ./nco-4.4.4/doc/surfit_2013.txt ./nco-4.4.4/doc/VERSION ./nco-4.4.4/doc/netcdf4.sh ./nco-4.4.4/doc/nco.xcf ./nco-4.4.4/doc/nco.xml ./nco-4.4.4/doc/nco.css ./nco-4.4.4/doc/nasa.png ./nco-4.4.4/doc/README ./nco-4.4.4/doc/logo_srl.xcf ./nco-4.4.4/doc/TAG ./nco-4.4.4/doc/ChangeLog ./nco-4.4.4/doc/nco.png ./nco-4.4.4/doc/man_srt.txt ./nco-4.4.4/doc/NEWS ./nco-4.4.4/doc/rtfm.txt ./nco-4.4.4/doc/my-bib-macros.texi ./nco-4.4.4/doc/ANNOUNCE ./nco-4.4.4/doc/logo_cog.odp ./nco-4.4.4/doc/nco.pdf ./nco-4.4.4/doc/logo_srl.png ./nco-4.4.4/doc/xmp_cesm.html ./nco-4.4.4/doc/soc_2006.txt ./nco-4.4.4/doc/logo_pch.xcf ./nco-4.4.4/doc/TODO ./nco-4.4.4/doc/Makefile.am ./nco-4.4.4/doc/dods.sh ./nco-4.4.4/doc/i18n.txt ./nco-4.4.4/data/ ./nco-4.4.4/data/ncap.in ./nco-4.4.4/data/hdn.cdl ./nco-4.4.4/data/snd_grp.cdl ./nco-4.4.4/data/snd.cdl ./nco-4.4.4/data/nco_bnch.sh ./nco-4.4.4/data/Makefile.in ./nco-4.4.4/data/ncap.in2 ./nco-4.4.4/data/in_grp_1.cdl ./nco-4.4.4/data/swamp.sh ./nco-4.4.4/data/cmip5.cdl ./nco-4.4.4/data/snc_grp.cdl ./nco-4.4.4/data/psd.nco ./nco-4.4.4/data/in_1.cdl ./nco-4.4.4/data/gsl_sf.in ./nco-4.4.4/data/bin_cnt.nco ./nco-4.4.4/data/in_grp_7.cdl ./nco-4.4.4/data/lrg_bm.in ./nco-4.4.4/data/hdf.cdl ./nco-4.4.4/data/nco_gsl.nco ./nco-4.4.4/data/xmp_flx_spc.nco ./nco-4.4.4/data/hdr_pad.sh ./nco-4.4.4/data/ddra.nco ./nco-4.4.4/data/ncap2.in ./nco-4.4.4/data/in_nomismatch.cdl ./nco-4.4.4/data/in_rec_zero.cdl ./nco-4.4.4/data/obs.cdl ./nco-4.4.4/data/dsm.cdl ./nco-4.4.4/data/in_grp_6.cdl ./nco-4.4.4/data/snc_ncwa.cdl ./nco-4.4.4/data/snd_ncwa.cdl ./nco-4.4.4/data/psd_wrf.nco ./nco-4.4.4/data/ncap2_tst.nco ./nco-4.4.4/data/mdl_2.cdl ./nco-4.4.4/data/netcdf4.nco ./nco-4.4.4/data/in.cdl ./nco-4.4.4/data/snc.cdl ./nco-4.4.4/data/tst.nco ./nco-4.4.4/data/in_grp_4.cdl ./nco-4.4.4/data/udunits.dat ./nco-4.4.4/data/nco_gsl.cdl ./nco-4.4.4/data/rgr.nco ./nco-4.4.4/data/xmp_wnd_msk.nco ./nco-4.4.4/data/in_grp_3.cdl ./nco-4.4.4/data/in_grp.cdl ./nco-4.4.4/data/in_grp_5.cdl ./nco-4.4.4/data/mdl_1.cdl ./nco-4.4.4/data/in_grp_2.cdl ./nco-4.4.4/data/big.cdl ./nco-4.4.4/data/mdl_3.cdl ./nco-4.4.4/data/xmp_500mb_hgt.nco ./nco-4.4.4/data/in_2.cdl ./nco-4.4.4/data/Makefile.am ./nco-4.4.4/data/in_4.cdl ./nco-4.4.4/data/buggy.cdl ./nco-4.4.4/AUTHORS ./nco-4.4.4/qt/ ./nco-4.4.4/qt/nco.pro ./nco-4.4.4/qt/ncra/ ./nco-4.4.4/qt/ncra/ncra.pro ./nco-4.4.4/qt/ncra/ncra.vcxproj ./nco-4.4.4/qt/ncpdq/ ./nco-4.4.4/qt/ncpdq/ncpdq.pro ./nco-4.4.4/qt/ncpdq/ncpdq.vcxproj ./nco-4.4.4/qt/ncbo/ ./nco-4.4.4/qt/ncbo/ncbo.vcxproj ./nco-4.4.4/qt/ncbo/ncbo.pro ./nco-4.4.4/qt/ncatted/ ./nco-4.4.4/qt/ncatted/ncatted.pro ./nco-4.4.4/qt/ncatted/ncatted.vcxproj ./nco-4.4.4/qt/ncrename/ ./nco-4.4.4/qt/ncrename/ncrename.pro ./nco-4.4.4/qt/ncrename/ncrename.vcxproj ./nco-4.4.4/qt/nco.sln ./nco-4.4.4/qt/ncflint/ ./nco-4.4.4/qt/ncflint/ncflint.vcxproj ./nco-4.4.4/qt/ncflint/ncflint.pro ./nco-4.4.4/qt/ncap2/ ./nco-4.4.4/qt/ncap2/ncap2.vcxproj ./nco-4.4.4/qt/ncap2/ncap2.pro ./nco-4.4.4/qt/tst_nco_c++/ ./nco-4.4.4/qt/tst_nco_c++/tst_nco_c++.pro ./nco-4.4.4/qt/tst_nco_c++/tst_nco_c++.vcxproj ./nco-4.4.4/qt/ncrcat/ ./nco-4.4.4/qt/ncrcat/ncrcat.pro ./nco-4.4.4/qt/ncrcat/ncrcat.vcxproj ./nco-4.4.4/qt/libnco_c++/ ./nco-4.4.4/qt/libnco_c++/libnco_c++.vcxproj ./nco-4.4.4/qt/libnco_c++/libnco_c++.pro ./nco-4.4.4/qt/ncea/ ./nco-4.4.4/qt/ncea/ncea.pro ./nco-4.4.4/qt/ncea/ncea.vcxproj ./nco-4.4.4/qt/ncks/ ./nco-4.4.4/qt/ncks/ncks.pro ./nco-4.4.4/qt/ncks/ncks.vcxproj ./nco-4.4.4/qt/libnco/ ./nco-4.4.4/qt/libnco/libnco.vcxproj ./nco-4.4.4/qt/libnco/libnco.pro ./nco-4.4.4/qt/ncecat/ ./nco-4.4.4/qt/ncecat/ncecat.pro ./nco-4.4.4/qt/ncecat/ncecat.vcxproj ./nco-4.4.4/qt/ncwa/ ./nco-4.4.4/qt/ncwa/ncwa.vcxproj ./nco-4.4.4/qt/ncwa/ncwa.pro ./nco-4.4.4/qt/nco.pri ./nco-4.4.4/bm/ ./nco-4.4.4/bm/NCO_benchmarks.pm ./nco-4.4.4/bm/mk_bm_plots.pl ./nco-4.4.4/bm/tms_lng.cdl ./nco-4.4.4/bm/NCO_bm.pm ./nco-4.4.4/bm/nco_bm_md5wc_tbl.pl ./nco-4.4.4/bm/nco_bm.pl ./nco-4.4.4/bm/stl_5km.cdl ./nco-4.4.4/bm/gcm_T85.cdl ./nco-4.4.4/bm/nco_bm_hyp.sh ./nco-4.4.4/bm/nco_bm_bch.sh ./nco-4.4.4/bm/nco_bm.sh ./nco-4.4.4/bm/cch_clr.pl ./nco-4.4.4/bm/NCO_rgr.pm ./nco-4.4.4/bm/ddra.theory_model.pl ./nco-4.4.4/autogen.sh ./nco-4.4.4/configure.ac ./nco-4.4.4/bld/ ./nco-4.4.4/bld/ddd_mpd.py ./nco-4.4.4/bld/nco_dst.pl ./nco-4.4.4/bld/pbuilder-sid ./nco-4.4.4/bld/libnco_tst.c ./nco-4.4.4/bld/Makefile ./nco-4.4.4/bld/libnco_c++_tst.cc ./nco-4.4.4/bld/nco.spec ./nco-4.4.4/bld/pvmgetarch ./nco-4.4.4/bin/ ./nco-4.4.4/configure.eg ./nco-4.4.4/acinclude.m4 ./nco-4.4.4/aclocal.m4 ./nco-4.4.4/config.h.in ./nco-4.4.4/autobld/ ./nco-4.4.4/autobld/depcomp ./nco-4.4.4/autobld/install-sh ./nco-4.4.4/autobld/test-driver ./nco-4.4.4/autobld/config.guess ./nco-4.4.4/autobld/mkinstalldirs ./nco-4.4.4/autobld/ltmain.sh ./nco-4.4.4/autobld/missing ./nco-4.4.4/autobld/texinfo.tex ./nco-4.4.4/autobld/ylwrap ./nco-4.4.4/autobld/config.sub ./nco-4.4.4/COPYING ./nco-4.4.4/INSTALL ./nco-4.4.4/m4/ ./nco-4.4.4/m4/ltsugar.m4 ./nco-4.4.4/m4/ltoptions.m4 ./nco-4.4.4/m4/ltversion.m4 ./nco-4.4.4/m4/libtool.m4 ./nco-4.4.4/m4/lt~obsolete.m4 ./nco-4.4.4/man/ ./nco-4.4.4/man/ncecat.1 ./nco-4.4.4/man/Makefile.in ./nco-4.4.4/man/ncap2.1 ./nco-4.4.4/man/nco.1 ./nco-4.4.4/man/ncra.1 ./nco-4.4.4/man/ncrename.1 ./nco-4.4.4/man/ncbo.1 ./nco-4.4.4/man/ncea.1 ./nco-4.4.4/man/ncflint.1 ./nco-4.4.4/man/ncwa.1 ./nco-4.4.4/man/ncap.1 ./nco-4.4.4/man/ncrcat.1 ./nco-4.4.4/man/nces.1 ./nco-4.4.4/man/ncpdq.1 ./nco-4.4.4/man/ncks.1 ./nco-4.4.4/man/Makefile.am ./nco-4.4.4/man/ncdiff.1 ./nco-4.4.4/man/ncatted.1 ./nco-4.4.4/Makefile.am sudo -u fink-bld [ENV] sh -c /tmp/fink.gLw4e /tmp/fink.2s93e #!/bin/sh -ev perl -pi -e 's|||' src/nco++/Invoke.cc \ src/nco++/NcapVector.hh src/nco++/ncoGrammer.g src/nco++/ncoLexer.hpp \ src/nco++/ncoParser.hpp src/nco++/ncoTree.hpp perl -pi -e 's|-lnco|/sw/build.build/nco-4.4.4-1/nco-4.4.4/src/nco/.libs/libnco.dylib|' src/nco++/Makefile.in perl -pi -e 's,dynamiclib,$& -single_module,' configure aclocal.m4 perl -pi -e "s,(apple.*)enable_shared='no',\1," configure sudo -u fink-bld [ENV] sh -c /tmp/fink.b669P /tmp/fink.O0G9Z #!/bin/sh -ev export UDUNITS2_PATH=/sw export NETCDF_INC=/sw \ NETCDF_LIB=/sw \ NETCDF4_ROOT=/sw export PATH=/sw/opt/texinfo-legacy/bin:$PATH ./configure --prefix=/sw --enable-udunits2 --disable-udunits --enable-gsl \ --enable-dap-netcdf \ --enable-netcdf4 \ --enable-dependency-tracking \ --enable-shared \ --disable-static checking build system type... x86_64-apple-darwin13.3.0 checking host system type... x86_64-apple-darwin13.3.0 checking target system type... x86_64-apple-darwin13.3.0 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... autobld/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... g++ -E checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for flex... flex checking lex output file root... lex.yy checking lex library... -ll checking whether yytext is a pointer... yes checking for bison... bison -y checking whether ln -s works... yes checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin13.3.0 file names to x86_64-apple-darwin13.3.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin13.3.0 file names to toolchain format... func_convert_file_noop checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.3.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking whether the g++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fno-common -DPIC checking if g++ PIC flag -fno-common -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... 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(cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking libintl.h usability... no checking libintl.h presence... no checking for libintl.h... no checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking cstdlib usability... yes checking cstdlib presence... yes checking for cstdlib... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for ptrdiff_t... yes checking size of int*... 8 checking whether C++ compiler implements namespaces... yes checking whether C++ compiler has working valarray... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no ################################# # Test for netCDF # ################################ checking for /opt/local/include/netcdf.h... no checking for /opt/local/lib/libnetcdf.a... no checking for /sopt/netcdf/netcdf411-gcc-serial/include/netcdf.h... no checking for /sopt/netcdf/netcdf411-gcc-serial/lib/libnetcdf.a... no checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for nc_open in -lnetcdf... yes ################################# # Test for netCDF4 support # ################################# checking whether NC_CHUNKED is declared... yes configure: netcdf.h contains netCDF4 definitions checking for nc_def_var_chunking in -lnetcdf... yes configure: Good news: Simple program compiles and links to netCDF4 library checking for gcc option to support OpenMP... unsupported Beginning generic tests for DAP support Testing for DAP-netCDF support (is DAP in libnetcdf.a?)... checking for nc__opendap in -lnetcdf... no configure: WARNING: DAP-netCDF support through libnetcdf.a disabled (missing DAP functions) checking for getopt_long... yes checking for _g95_ac_array in -lf95... no checking for sin in -lm... yes checking for sinf in -lsunmath... no checking for gettext in -lintl... no checking for res_init in -lresolv... yes checking for main in -lsocket... no checking for main in -lthread... no checking for nco_open in -lnco... no checking for nc_inq_format... yes checking for getopt... yes checking for getopt_long... 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(cached) yes checking for strdup... yes checking for strcasecmp... yes checking for strcasestr... yes ########################################################## # Sorting out MacOSX build parameters # ########################################################## ################################# # Testing for ANTLR support # ################################# checking for runantlr... no checking for antlr... antlr configure: antlr library was found ######################################## # Testing for GSL support # ######################################## configure: These GSL library and header tests must succeed for GSL support: checking for gsl_sf_gamma_inc in -lgsl... yes checking for /sw/include/gsl/gsl_sf_gamma.h... yes configure: GSL support enabled checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking for sys/types.h... (cached) yes checking for regexec... yes checking for regcomp... (cached) yes checking for regfree... yes ######################################## # Testing for UDUNITS support # ######################################## checking for XML_ParserCreate in -lexpat... yes checking for /sw/share/udunits/udunits2.xml... no configure: WARNING: file /sw/share/udunits/udunits2.xml was not found but will still attempt to build NCO with UDUnits2 support. configure: NB: Following tests of UDUnits2 library and header must succeed for UDUnits2 support: checking for ut_read_xml in -ludunits2... yes checking for /sw/include/udunits2.h... yes configure: UDUnits2 support enabled checking for ncgen... /sw/bin/ncgen configure: Creating sample netCDF data files for self-tests ############################### # Require Shared Libs? # ############################### checking for makeinfo... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating data/Makefile config.status: creating src/Makefile config.status: creating src/nco/Makefile config.status: creating man/Makefile config.status: creating src/nco_c++/Makefile config.status: creating src/nco++/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Parameters: AR_FLAGS............. cru CC................... gcc CFLAGS............... -fno-common -g -O2 -std=c99 -D_BSD_SOURCE CPP.................. gcc -E CPPFLAGS............. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include CXX.................. g++ CXXFLAGS............. -g -O2 OPENMP_CFLAGS........ ENABLE_DAP_NETCDF.... no ENABLE_DAP........... no ENABLE_GSL........... yes HAVE_NETCDF4_H....... yes ENABLE_NETCDF4....... yes NETCDF4_ROOT......... /sw ENABLE_UDUNITS....... no ENABLE_UDUNITS2...... yes GSL_ROOT............. /sw HAVE_ANTLR........... antlr HAVE_MAKEINFO........ yes HOST................. host................. x86_64-apple-darwin13.3.0 HOSTNAME............. aurora LDFLAGS.............. -L/sw/lib -lnetcdf -L/sw -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib LIBS................. -ludunits2 -lexpat -lgsl -lresolv -lm -lnetcdf -lnetcdf -L/sw/lib -lgsl -lgslcblas -ludunits2 install prefix ...... /sw ******************************************************************* Configuration complete. You are now ready to run 'make'. Ensure 'make' points to GNU Make (AT&T Make chokes on GNU syntax). If the build fails, please examine the file 'configure.eg' in the top-level NCO directory. It contains examples known to build NCO for various platforms and compilers. ******************************************************************* make /Applications/Xcode.app/Contents/Developer/usr/bin/make all-recursive Making all in data /sw/bin/ncgen -o big.nc big.cdl /sw/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl /sw/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl Making all in src Making all in nco /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_att_utl.lo -MD -MP -MF .deps/nco_att_utl.Tpo -c -o nco_att_utl.lo nco_att_utl.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_aux.lo -MD -MP -MF .deps/nco_aux.Tpo -c -o nco_aux.lo nco_aux.c /bin/sh ../../libtool 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-c -o nco_grp_utl.lo nco_grp_utl.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_grp_trv.lo -MD -MP -MF .deps/nco_grp_trv.Tpo -c -o nco_grp_trv.lo nco_grp_trv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_fl_utl.lo -MD -MP -MF .deps/nco_fl_utl.Tpo -c nco_fl_utl.c -fno-common -DPIC -o .libs/nco_fl_utl.o mv -f .deps/nco_cnv_csm.Tpo .deps/nco_cnv_csm.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_lmt.lo -MD -MP -MF .deps/nco_lmt.Tpo -c -o nco_lmt.lo nco_lmt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_grp_utl.lo -MD -MP -MF .deps/nco_grp_utl.Tpo -c nco_grp_utl.c -fno-common -DPIC -o .libs/nco_grp_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_grp_trv.lo -MD -MP -MF .deps/nco_grp_trv.Tpo -c nco_grp_trv.c -fno-common -DPIC -o .libs/nco_grp_trv.o mv -f .deps/nco_att_utl.Tpo .deps/nco_att_utl.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_lst_utl.lo -MD -MP -MF .deps/nco_lst_utl.Tpo -c -o nco_lst_utl.lo nco_lst_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_lmt.lo -MD -MP -MF .deps/nco_lmt.Tpo -c nco_lmt.c -fno-common -DPIC -o .libs/nco_lmt.o mv -f .deps/nco_ctl.Tpo .deps/nco_ctl.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_md5.lo -MD -MP -MF .deps/nco_md5.Tpo -c -o nco_md5.lo nco_md5.c mv -f .deps/nco_dmn_utl.Tpo .deps/nco_dmn_utl.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_mmr.lo -MD -MP -MF .deps/nco_mmr.Tpo -c -o nco_mmr.lo nco_mmr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_lst_utl.lo -MD -MP -MF .deps/nco_lst_utl.Tpo -c nco_lst_utl.c -fno-common -DPIC -o .libs/nco_lst_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_md5.lo -MD -MP -MF .deps/nco_md5.Tpo -c nco_md5.c -fno-common -DPIC -o .libs/nco_md5.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_mmr.lo -MD -MP -MF .deps/nco_mmr.Tpo -c nco_mmr.c -fno-common -DPIC -o .libs/nco_mmr.o nco_lst_utl.c:37:47: warning: unknown escape sequence '\.' const char rx_sng[]="%([+-0#'I])?([0-9]*)?([\.?[0-9]*)?([h+l+Ljzt])?[bcdeEfFgGiosuxX]"; /* [sng] Regular expression pattern */ ^~ nco_lst_utl.c:102:413: warning: format specifies type 'int' but the argument has type 'regoff_t' (aka 'long long') [-Wformat] if(nco_dbg_lvl_get() > 3) (void)fprintf(stderr,"%s: DEBUG %s reports that the user-supplied formatting string \"%s\" has %d matches to the regular expression \"%s\", which has %zu parenthesized sub-expressions. The first match, if any, begins at offset %d and ends at offset %d and is %d characters long. The revised format string is \"%s\"\n",nco_prg_nm_get(),fnc_nm,fmt_sng,mch_nbr,rx_sng,rx_prn_sub_xpr_nbr,mch_psn_srt,mch_psn_end,mch_psn_end-mch_psn_srt+1,fmt_sng_new); ~~ ^~~~~~~~~~~ %lld nco_lst_utl.c:102:425: warning: format specifies type 'int' but the argument has type 'regoff_t' (aka 'long long') [-Wformat] if(nco_dbg_lvl_get() > 3) (void)fprintf(stderr,"%s: DEBUG %s reports that the user-supplied formatting string \"%s\" has %d matches to the regular expression \"%s\", which has %zu parenthesized sub-expressions. The first match, if any, begins at offset %d and ends at offset %d and is %d characters long. The revised format string is \"%s\"\n",nco_prg_nm_get(),fnc_nm,fmt_sng,mch_nbr,rx_sng,rx_prn_sub_xpr_nbr,mch_psn_srt,mch_psn_end,mch_psn_end-mch_psn_srt+1,fmt_sng_new); ~~ ^~~~~~~~~~~ %lld nco_lst_utl.c:102:437: warning: format specifies type 'int' but the argument has type 'long long' [-Wformat] if(nco_dbg_lvl_get() > 3) (void)fprintf(stderr,"%s: DEBUG %s reports that the user-supplied formatting string \"%s\" has %d matches to the regular expression \"%s\", which has %zu parenthesized sub-expressions. The first match, if any, begins at offset %d and ends at offset %d and is %d characters long. The revised format string is \"%s\"\n",nco_prg_nm_get(),fnc_nm,fmt_sng,mch_nbr,rx_sng,rx_prn_sub_xpr_nbr,mch_psn_srt,mch_psn_end,mch_psn_end-mch_psn_srt+1,fmt_sng_new); ~~ ^~~~~~~~~~~~~~~~~~~~~~~~~ %lld nco_mmr.c:589:676: warning: format specifies type 'long' but the argument has type '__darwin_suseconds_t' (aka 'int') [-Wformat] if(nco_dbg_lvl_get() > nco_dbg_io) (void)fprintf(stdout,"%s: INFO %s reports: rusage.ru_utime.tv_sec = user time used = %li s, rusage.ru_utime.tv_usec = user time used = %li us, rusage.ru_stime.tv_sec = system time used = %li s, rusage.ru_stime.tv_usec = system time used = %li us, rusage.ru_maxrss = maximum resident set size = %li [sz], rusage.ru_ixrss = integral shared memory size = %li [sz tm], rusage.ru_idrss = integral unshared data size = %li [sz], rusage.ru_isrss = integral unshared stack size = %li [sz], rusage.ru_minflt = page reclaims = %li, rusage.ru_majflt = page faults = %li, rusage.ru_nswap = swaps = %li\n",nco_prg_nm_get(),fnc_nm,usg.ru_utime.tv_sec,usg.ru_utime.tv_usec,usg.ru_stime.tv_sec,usg.ru_stime.tv_usec,usg.ru_maxrss,usg.ru_ixrss,usg.ru_idrss,usg.ru_isrss,usg.ru_minflt,usg.ru_majflt,usg.ru_nswap); ~~~ ^~~~~~~~~~~~~~~~~~~~ %i nco_mmr.c:589:717: warning: format specifies type 'long' but the argument has type '__darwin_suseconds_t' (aka 'int') [-Wformat] if(nco_dbg_lvl_get() > nco_dbg_io) (void)fprintf(stdout,"%s: INFO %s reports: rusage.ru_utime.tv_sec = user time used = %li s, rusage.ru_utime.tv_usec = user time used = %li us, rusage.ru_stime.tv_sec = system time used = %li s, rusage.ru_stime.tv_usec = system time used = %li us, rusage.ru_maxrss = maximum resident set size = %li [sz], rusage.ru_ixrss = integral shared memory size = %li [sz tm], rusage.ru_idrss = integral unshared data size = %li [sz], rusage.ru_isrss = integral unshared stack size = %li [sz], rusage.ru_minflt = page reclaims = %li, rusage.ru_majflt = page faults = %li, rusage.ru_nswap = swaps = %li\n",nco_prg_nm_get(),fnc_nm,usg.ru_utime.tv_sec,usg.ru_utime.tv_usec,usg.ru_stime.tv_sec,usg.ru_stime.tv_usec,usg.ru_maxrss,usg.ru_ixrss,usg.ru_idrss,usg.ru_isrss,usg.ru_minflt,usg.ru_majflt,usg.ru_nswap); ~~~ ^~~~~~~~~~~~~~~~~~~~ %i mv -f .deps/nco_fl_utl.Tpo .deps/nco_fl_utl.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_msa.lo -MD -MP -MF .deps/nco_msa.Tpo -c -o nco_msa.lo nco_msa.c 2 warnings generated. 4 warnings generated. mv -f .deps/nco_mmr.Tpo .deps/nco_mmr.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_mss_val.lo -MD -MP -MF .deps/nco_mss_val.Tpo -c -o nco_mss_val.lo nco_mss_val.c mv -f .deps/nco_lst_utl.Tpo .deps/nco_lst_utl.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_netcdf.lo -MD -MP -MF .deps/nco_netcdf.Tpo -c -o nco_netcdf.lo nco_netcdf.c mv -f .deps/nco_md5.Tpo .deps/nco_md5.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_omp.lo -MD -MP -MF .deps/nco_omp.Tpo -c -o nco_omp.lo nco_omp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_msa.lo -MD -MP -MF .deps/nco_msa.Tpo -c nco_msa.c -fno-common -DPIC -o .libs/nco_msa.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_mss_val.lo -MD -MP -MF .deps/nco_mss_val.Tpo -c nco_mss_val.c -fno-common -DPIC -o .libs/nco_mss_val.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_netcdf.lo -MD -MP -MF .deps/nco_netcdf.Tpo -c nco_netcdf.c -fno-common -DPIC -o .libs/nco_netcdf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_omp.lo -MD -MP -MF .deps/nco_omp.Tpo -c nco_omp.c -fno-common -DPIC -o .libs/nco_omp.o mv -f .deps/nco_grp_trv.Tpo .deps/nco_grp_trv.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_pck.lo -MD -MP -MF .deps/nco_pck.Tpo -c -o nco_pck.lo nco_pck.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_pck.lo -MD -MP -MF .deps/nco_pck.Tpo -c nco_pck.c -fno-common -DPIC -o .libs/nco_pck.o mv -f .deps/nco_omp.Tpo .deps/nco_omp.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_prn.lo -MD -MP -MF .deps/nco_prn.Tpo -c -o nco_prn.lo nco_prn.c mv -f .deps/nco_lmt.Tpo .deps/nco_lmt.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_rec_var.lo -MD -MP -MF .deps/nco_rec_var.Tpo -c -o nco_rec_var.lo nco_rec_var.c mv -f .deps/nco_mss_val.Tpo .deps/nco_mss_val.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_rth_flt.lo -MD -MP -MF .deps/nco_rth_flt.Tpo -c -o nco_rth_flt.lo nco_rth_flt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_prn.lo -MD -MP -MF .deps/nco_prn.Tpo -c nco_prn.c -fno-common -DPIC -o .libs/nco_prn.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_rec_var.lo -MD -MP -MF .deps/nco_rec_var.Tpo -c nco_rec_var.c -fno-common -DPIC -o .libs/nco_rec_var.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_rth_flt.lo -MD -MP -MF .deps/nco_rth_flt.Tpo -c nco_rth_flt.c -fno-common -DPIC -o .libs/nco_rth_flt.o nco_rth_flt.c:84:38: warning: 'gamma' is deprecated: first deprecated in OS X 10.9 [-Wdeprecated-declarations] float gammaf(float x){return (float)(gamma((double)x));} ^ /usr/include/math.h:720:15: note: 'gamma' declared here extern double gamma(double) __OSX_AVAILABLE_BUT_DEPRECATED(__MAC_10_0, __MAC_10_9, __IPHONE_NA, __IPHONE_NA); ^ 1 warning generated. mv -f .deps/nco_rec_var.Tpo .deps/nco_rec_var.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_rth_utl.lo -MD -MP -MF .deps/nco_rth_utl.Tpo -c -o nco_rth_utl.lo nco_rth_utl.c mv -f .deps/nco_rth_flt.Tpo .deps/nco_rth_flt.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_scl_utl.lo -MD -MP -MF .deps/nco_scl_utl.Tpo -c -o nco_scl_utl.lo nco_scl_utl.c mv -f .deps/nco_netcdf.Tpo .deps/nco_netcdf.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_scm.lo -MD -MP -MF .deps/nco_scm.Tpo -c -o nco_scm.lo nco_scm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_rth_utl.lo -MD -MP -MF .deps/nco_rth_utl.Tpo -c nco_rth_utl.c -fno-common -DPIC -o .libs/nco_rth_utl.o mv -f .deps/nco_pck.Tpo .deps/nco_pck.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 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-DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_sng_utl.lo -MD -MP -MF .deps/nco_sng_utl.Tpo -c nco_sng_utl.c -fno-common -DPIC -o .libs/nco_sng_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_srm.lo -MD -MP -MF .deps/nco_srm.Tpo -c nco_srm.c -fno-common -DPIC -o .libs/nco_srm.o mv -f .deps/nco_cnf_typ.Tpo .deps/nco_cnf_typ.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_var_avg.lo -MD -MP -MF .deps/nco_var_avg.Tpo -c -o nco_var_avg.lo nco_var_avg.c mv -f .deps/nco_scl_utl.Tpo .deps/nco_scl_utl.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_var_lst.lo -MD -MP -MF .deps/nco_var_lst.Tpo -c -o nco_var_lst.lo nco_var_lst.c mv -f .deps/nco_scm.Tpo .deps/nco_scm.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_var_rth.lo -MD -MP -MF .deps/nco_var_rth.Tpo -c -o nco_var_rth.lo nco_var_rth.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_var_avg.lo -MD -MP -MF .deps/nco_var_avg.Tpo -c nco_var_avg.c -fno-common -DPIC -o .libs/nco_var_avg.o mv -f .deps/nco_rth_utl.Tpo .deps/nco_rth_utl.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_var_scv.lo -MD -MP -MF .deps/nco_var_scv.Tpo -c -o nco_var_scv.lo nco_var_scv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_var_lst.lo -MD -MP -MF .deps/nco_var_lst.Tpo -c nco_var_lst.c -fno-common -DPIC -o .libs/nco_var_lst.o mv -f .deps/nco_srm.Tpo .deps/nco_srm.Plo mv -f .deps/nco_sng_utl.Tpo .deps/nco_sng_utl.Plo /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_var_utl.lo -MD -MP -MF .deps/nco_var_utl.Tpo -c -o nco_var_utl.lo nco_var_utl.c gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT ncap_utl.o -MD -MP -MF .deps/ncap_utl.Tpo -c -o ncap_utl.o ncap_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_var_rth.lo -MD -MP -MF .deps/nco_var_rth.Tpo -c nco_var_rth.c -fno-common -DPIC -o .libs/nco_var_rth.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_var_scv.lo -MD -MP -MF .deps/nco_var_scv.Tpo -c nco_var_scv.c -fno-common -DPIC -o .libs/nco_var_scv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_var_utl.lo -MD -MP -MF .deps/nco_var_utl.Tpo -c nco_var_utl.c -fno-common -DPIC -o .libs/nco_var_utl.o mv -f .deps/nco_var_lst.Tpo .deps/nco_var_lst.Plo gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT ncap.o -MD -MP -MF .deps/ncap.Tpo -c -o ncap.o ncap.c mv -f .deps/ncap_utl.Tpo .deps/ncap_utl.Po test -f ncap_yacc.c || /bin/sh ../../autobld/ylwrap ncap_yacc.y y.tab.c ncap_yacc.c y.tab.h `echo ncap_yacc.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output ncap_yacc.output -- bison -y -d --name-prefix=nco_yy mv -f .deps/nco_var_utl.Tpo .deps/nco_var_utl.Plo test -f ncap_lex.c || /bin/sh ../../autobld/ylwrap ncap_lex.l lex.nco_yy.c ncap_lex.c -- flex -Pnco_yy mv -f .deps/nco_var_scv.Tpo .deps/nco_var_scv.Plo gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT ncatted.o -MD -MP -MF .deps/ncatted.Tpo -c -o ncatted.o ncatted.c mv -f .deps/nco_var_avg.Tpo .deps/nco_var_avg.Plo gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT ncbo.o -MD -MP -MF .deps/ncbo.Tpo -c -o ncbo.o ncbo.c mv -f .deps/nco_prn.Tpo .deps/nco_prn.Plo gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT ncecat.o -MD -MP -MF .deps/ncecat.Tpo -c -o ncecat.o ncecat.c mv -f .deps/nco_var_rth.Tpo .deps/nco_var_rth.Plo gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT ncflint.o -MD -MP -MF .deps/ncflint.Tpo -c -o ncflint.o ncflint.c mv -f .deps/nco_grp_utl.Tpo .deps/nco_grp_utl.Plo gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT ncks.o -MD -MP -MF .deps/ncks.Tpo -c -o ncks.o ncks.c gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT ncpdq.o -MD -MP -MF .deps/ncpdq.Tpo -c -o ncpdq.o ncpdq.c mv -f .deps/ncatted.Tpo .deps/ncatted.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT ncra.o -MD -MP -MF .deps/ncra.Tpo -c -o ncra.o ncra.c mv -f .deps/ncbo.Tpo .deps/ncbo.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT ncrename.o -MD -MP -MF .deps/ncrename.Tpo -c -o ncrename.o ncrename.c updating ncap_yacc.h gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT ncwa.o -MD -MP -MF .deps/ncwa.Tpo -c -o ncwa.o ncwa.c mv -f .deps/ncap.Tpo .deps/ncap.Po /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -release 4.4.4 -L/sw/lib -lnetcdf -L/sw -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib -o libnco.la -rpath /sw/lib nco_att_utl.lo nco_aux.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnk.lo nco_cnv_arm.lo nco_cnv_csm.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_grp_utl.lo nco_grp_trv.lo nco_lmt.lo nco_lst_utl.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_prn.lo nco_rec_var.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_scm.lo nco_sng_utl.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo -ludunits2 -lexpat -lgsl -lresolv -lm -lnetcdf -lnetcdf -L/sw/lib -lgsl -lgslcblas -ludunits2 mv -f .deps/ncecat.Tpo .deps/ncecat.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT ncap_yacc.o -MD -MP -MF .deps/ncap_yacc.Tpo -c -o ncap_yacc.o ncap_yacc.c mv -f .deps/ncflint.Tpo .deps/ncflint.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT ncap_lex.o -MD -MP -MF .deps/ncap_lex.Tpo -c -o ncap_lex.o ncap_lex.c mv -f .deps/ncks.Tpo .deps/ncks.Po mv -f .deps/ncrename.Tpo .deps/ncrename.Po mv -f .deps/ncpdq.Tpo .deps/ncpdq.Po ncap_lex.l:1042:46: warning: incompatible pointer types passing 'nm_sct *' to parameter of type 'nm_id_sct *' [-Wincompatible-pointer-types] lst_d=nco_var_lst_add(lst_d,&lst_d_nbr,lval.sbs_lst->lst,lval.sbs_lst->nbr); ^~~~~~~~~~~~~~~~~ ./ncap.h:194:57: note: passing argument to parameter here nm_id_sct *nco_var_lst_add(nm_id_sct *,int *,nm_id_sct *,int); ^ libtool: link: g++ -dynamiclib -single_module -Wl,-undefined -Wl,dynamic_lookup -o .libs/libnco-4.4.4.dylib .libs/nco_att_utl.o .libs/nco_aux.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/nco_cnf_dmn.o .libs/nco_cnf_typ.o .libs/nco_cnk.o .libs/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_ctl.o .libs/nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_fl_utl.o .libs/nco_grp_utl.o .libs/nco_grp_trv.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_md5.o .libs/nco_mmr.o .libs/nco_msa.o .libs/nco_mss_val.o .libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/nco_prn.o .libs/nco_rec_var.o .libs/nco_rth_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_scm.o .libs/nco_sng_utl.o .libs/nco_srm.o .libs/nco_var_avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/nco_var_scv.o .libs/nco_var_utl.o -L/sw/lib -L/sw -lexpat -lresolv -lm /sw/lib/libnetcdf.dylib /sw/lib/libgsl.dylib /sw/lib/libgslcblas.dylib /sw/lib/libudunits2.dylib -O2 -Wl,-dead_strip_dylibs -install_name /sw/lib/libnco-4.4.4.dylib -Wl,-single_module mv -f .deps/ncwa.Tpo .deps/ncwa.Po mv -f .deps/ncap_yacc.Tpo .deps/ncap_yacc.Po mv -f .deps/ncra.Tpo .deps/ncra.Po 1 warning generated. mv -f .deps/ncap_lex.Tpo .deps/ncap_lex.Po libtool: link: (cd ".libs" && rm -f "libnco.dylib" && ln -s "libnco-4.4.4.dylib" "libnco.dylib") libtool: link: ( cd ".libs" && rm -f "libnco.la" && ln -s "../libnco.la" "libnco.la" ) /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -L/sw/lib -lnetcdf -L/sw -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib -o ncap ncap_utl.o ncap.o ncap_yacc.o ncap_lex.o libnco.la -ludunits2 -lexpat -lgsl -lresolv -lm -lnetcdf -lnetcdf -L/sw/lib -lgsl -lgslcblas -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -L/sw/lib -lnetcdf -L/sw -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib -o ncatted ncatted.o libnco.la -ludunits2 -lexpat -lgsl -lresolv -lm -lnetcdf -lnetcdf -L/sw/lib -lgsl -lgslcblas -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -L/sw/lib -lnetcdf -L/sw -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib -o ncbo ncbo.o libnco.la -ludunits2 -lexpat -lgsl -lresolv -lm -lnetcdf -lnetcdf -L/sw/lib -lgsl -lgslcblas -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -L/sw/lib -lnetcdf -L/sw -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib -o ncecat ncecat.o libnco.la -ludunits2 -lexpat -lgsl -lresolv -lm -lnetcdf -lnetcdf -L/sw/lib -lgsl -lgslcblas -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -L/sw/lib -lnetcdf -L/sw -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib -o ncflint ncflint.o libnco.la -ludunits2 -lexpat -lgsl -lresolv -lm -lnetcdf -lnetcdf -L/sw/lib -lgsl -lgslcblas -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -L/sw/lib -lnetcdf -L/sw -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib -o ncks ncks.o libnco.la -ludunits2 -lexpat -lgsl -lresolv -lm -lnetcdf -lnetcdf -L/sw/lib -lgsl -lgslcblas -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -L/sw/lib -lnetcdf -L/sw -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib -o ncpdq ncpdq.o libnco.la -ludunits2 -lexpat -lgsl -lresolv -lm -lnetcdf -lnetcdf -L/sw/lib -lgsl -lgslcblas -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -L/sw/lib -lnetcdf -L/sw -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib -o ncra ncra.o libnco.la -ludunits2 -lexpat -lgsl -lresolv -lm -lnetcdf -lnetcdf -L/sw/lib -lgsl -lgslcblas -ludunits2 libtool: link: gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -Wl,-dead_strip_dylibs -o .libs/ncatted ncatted.o -L/sw/lib -L/sw ./.libs/libnco.dylib -lexpat -lresolv -lm /sw/lib/libnetcdf.dylib /sw/lib/libgsl.dylib /sw/lib/libgslcblas.dylib /sw/lib/libudunits2.dylib libtool: link: gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -Wl,-dead_strip_dylibs -o .libs/ncecat ncecat.o -L/sw/lib -L/sw ./.libs/libnco.dylib -lexpat -lresolv -lm /sw/lib/libnetcdf.dylib /sw/lib/libgsl.dylib /sw/lib/libgslcblas.dylib /sw/lib/libudunits2.dylib libtool: link: gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -Wl,-dead_strip_dylibs -o .libs/ncap ncap_utl.o ncap.o ncap_yacc.o ncap_lex.o -L/sw/lib -L/sw ./.libs/libnco.dylib -lexpat -lresolv -lm /sw/lib/libnetcdf.dylib /sw/lib/libgsl.dylib /sw/lib/libgslcblas.dylib /sw/lib/libudunits2.dylib libtool: link: gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -Wl,-dead_strip_dylibs -o .libs/ncbo ncbo.o -L/sw/lib -L/sw ./.libs/libnco.dylib -lexpat -lresolv -lm /sw/lib/libnetcdf.dylib /sw/lib/libgsl.dylib /sw/lib/libgslcblas.dylib /sw/lib/libudunits2.dylib libtool: link: gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -Wl,-dead_strip_dylibs -o .libs/ncpdq ncpdq.o -L/sw/lib -L/sw ./.libs/libnco.dylib -lexpat -lresolv -lm /sw/lib/libnetcdf.dylib /sw/lib/libgsl.dylib /sw/lib/libgslcblas.dylib /sw/lib/libudunits2.dylib libtool: link: gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -Wl,-dead_strip_dylibs -o .libs/ncks ncks.o -L/sw/lib -L/sw ./.libs/libnco.dylib -lexpat -lresolv -lm /sw/lib/libnetcdf.dylib /sw/lib/libgsl.dylib /sw/lib/libgslcblas.dylib /sw/lib/libudunits2.dylib libtool: link: gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -Wl,-dead_strip_dylibs -o .libs/ncflint ncflint.o -L/sw/lib -L/sw ./.libs/libnco.dylib -lexpat -lresolv -lm /sw/lib/libnetcdf.dylib /sw/lib/libgsl.dylib /sw/lib/libgslcblas.dylib /sw/lib/libudunits2.dylib libtool: link: gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -Wl,-dead_strip_dylibs -o .libs/ncra ncra.o -L/sw/lib -L/sw ./.libs/libnco.dylib -lexpat -lresolv -lm /sw/lib/libnetcdf.dylib /sw/lib/libgsl.dylib /sw/lib/libgslcblas.dylib /sw/lib/libudunits2.dylib /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -L/sw/lib -lnetcdf -L/sw -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib -o ncrename ncrename.o libnco.la -ludunits2 -lexpat -lgsl -lresolv -lm -lnetcdf -lnetcdf -L/sw/lib -lgsl -lgslcblas -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -L/sw/lib -lnetcdf -L/sw -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib -o ncwa ncwa.o ncap_utl.o ncap_lex.o ncap_yacc.o libnco.la -ludunits2 -lexpat -lgsl -lresolv -lm -lnetcdf -lnetcdf -L/sw/lib -lgsl -lgslcblas -ludunits2 libtool: link: gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -Wl,-dead_strip_dylibs -o .libs/ncrename ncrename.o -L/sw/lib -L/sw ./.libs/libnco.dylib -lexpat -lresolv -lm /sw/lib/libnetcdf.dylib /sw/lib/libgsl.dylib /sw/lib/libgslcblas.dylib /sw/lib/libudunits2.dylib libtool: link: gcc -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -Wl,-dead_strip_dylibs -o .libs/ncwa ncwa.o ncap_utl.o ncap_lex.o ncap_yacc.o -L/sw/lib -L/sw ./.libs/libnco.dylib -lexpat -lresolv -lm /sw/lib/libnetcdf.dylib /sw/lib/libgsl.dylib /sw/lib/libgslcblas.dylib /sw/lib/libudunits2.dylib Making all in nco_c++ /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT libnco_c___la-nco_att.lo -MD -MP -MF .deps/libnco_c___la-nco_att.Tpo -c -o libnco_c___la-nco_att.lo `test -f 'nco_att.cc' || echo './'`nco_att.cc /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT libnco_c___la-nco_dmn.lo -MD -MP -MF .deps/libnco_c___la-nco_dmn.Tpo -c -o libnco_c___la-nco_dmn.lo `test -f 'nco_dmn.cc' || echo './'`nco_dmn.cc /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT libnco_c___la-nco_fl.lo -MD -MP -MF .deps/libnco_c___la-nco_fl.Tpo -c -o libnco_c___la-nco_fl.lo `test -f 'nco_fl.cc' || echo './'`nco_fl.cc /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT libnco_c___la-nco_hgh.lo -MD -MP -MF .deps/libnco_c___la-nco_hgh.Tpo -c -o libnco_c___la-nco_hgh.lo `test -f 'nco_hgh.cc' || echo './'`nco_hgh.cc /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT libnco_c___la-nco_utl.lo -MD -MP -MF .deps/libnco_c___la-nco_utl.Tpo -c -o libnco_c___la-nco_utl.lo `test -f 'nco_utl.cc' || echo './'`nco_utl.cc /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT libnco_c___la-nco_var.lo -MD -MP -MF .deps/libnco_c___la-nco_var.Tpo -c -o libnco_c___la-nco_var.lo `test -f 'nco_var.cc' || echo './'`nco_var.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT libnco_c___la-nco_fl.lo -MD -MP -MF .deps/libnco_c___la-nco_fl.Tpo -c nco_fl.cc -fno-common -DPIC -o .libs/libnco_c___la-nco_fl.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT libnco_c___la-nco_att.lo -MD -MP -MF .deps/libnco_c___la-nco_att.Tpo -c nco_att.cc -fno-common -DPIC -o .libs/libnco_c___la-nco_att.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT libnco_c___la-nco_hgh.lo -MD -MP -MF .deps/libnco_c___la-nco_hgh.Tpo -c nco_hgh.cc -fno-common -DPIC -o .libs/libnco_c___la-nco_hgh.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT libnco_c___la-nco_dmn.lo -MD -MP -MF .deps/libnco_c___la-nco_dmn.Tpo -c nco_dmn.cc -fno-common -DPIC -o .libs/libnco_c___la-nco_dmn.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT libnco_c___la-nco_utl.lo -MD -MP -MF .deps/libnco_c___la-nco_utl.Tpo -c nco_utl.cc -fno-common -DPIC -o .libs/libnco_c___la-nco_utl.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT libnco_c___la-nco_var.lo -MD -MP -MF .deps/libnco_c___la-nco_var.Tpo -c nco_var.cc -fno-common -DPIC -o .libs/libnco_c___la-nco_var.o mv -f .deps/libnco_c___la-nco_fl.Tpo .deps/libnco_c___la-nco_fl.Plo mv -f .deps/libnco_c___la-nco_dmn.Tpo .deps/libnco_c___la-nco_dmn.Plo mv -f .deps/libnco_c___la-nco_hgh.Tpo .deps/libnco_c___la-nco_hgh.Plo mv -f .deps/libnco_c___la-nco_att.Tpo .deps/libnco_c___la-nco_att.Plo mv -f .deps/libnco_c___la-nco_utl.Tpo .deps/libnco_c___la-nco_utl.Plo mv -f .deps/libnco_c___la-nco_var.Tpo .deps/libnco_c___la-nco_var.Plo /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=link g++ -g -O2 -release 4.4.4 -L/sw/lib -lnetcdf -L/sw -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib -o libnco_c++.la -rpath /sw/lib libnco_c___la-nco_att.lo libnco_c___la-nco_dmn.lo libnco_c___la-nco_fl.lo libnco_c___la-nco_hgh.lo libnco_c___la-nco_utl.lo libnco_c___la-nco_var.lo -ludunits2 -lexpat -lgsl -lresolv -lm -lnetcdf -lnetcdf -L/sw/lib -lgsl -lgslcblas -ludunits2 libtool: link: g++ -dynamiclib -single_module -Wl,-undefined -Wl,dynamic_lookup -o .libs/libnco_c++-4.4.4.dylib .libs/libnco_c___la-nco_att.o .libs/libnco_c___la-nco_dmn.o .libs/libnco_c___la-nco_fl.o .libs/libnco_c___la-nco_hgh.o .libs/libnco_c___la-nco_utl.o .libs/libnco_c___la-nco_var.o -L/sw/lib -L/sw -lexpat -lresolv -lm /sw/lib/libnetcdf.dylib /sw/lib/libgsl.dylib /sw/lib/libgslcblas.dylib /sw/lib/libudunits2.dylib -O2 -Wl,-dead_strip_dylibs -install_name /sw/lib/libnco_c++-4.4.4.dylib -Wl,-single_module libtool: link: (cd ".libs" && rm -f "libnco_c++.dylib" && ln -s "libnco_c++-4.4.4.dylib" "libnco_c++.dylib") libtool: link: ( cd ".libs" && rm -f "libnco_c++.la" && ln -s "../libnco_c++.la" "libnco_c++.la" ) Making all in nco++ g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/sw/include -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT Invoke.o -MD -MP -MF .deps/Invoke.Tpo -c -o Invoke.o Invoke.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/sw/include -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT ncap2.o -MD -MP -MF .deps/ncap2.Tpo -c -o ncap2.o ncap2.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/sw/include -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT ncap2_utl.o -MD -MP -MF .deps/ncap2_utl.Tpo -c -o ncap2_utl.o ncap2_utl.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/sw/include -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT sdo_utl.o -MD -MP -MF .deps/sdo_utl.Tpo -c -o sdo_utl.o sdo_utl.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/sw/include -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT sym_cls.o -MD -MP -MF .deps/sym_cls.Tpo -c -o sym_cls.o sym_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/sw/include -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT fmc_cls.o -MD -MP -MF .deps/fmc_cls.Tpo -c -o fmc_cls.o fmc_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/sw/include -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT fmc_all_cls.o -MD -MP -MF .deps/fmc_all_cls.Tpo -c -o fmc_all_cls.o fmc_all_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/sw/include -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT fmc_gsl_cls.o -MD -MP -MF .deps/fmc_gsl_cls.Tpo -c -o fmc_gsl_cls.o fmc_gsl_cls.cc mv -f .deps/sym_cls.Tpo .deps/sym_cls.Po g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/sw/include -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT prs_cls.o -MD -MP -MF .deps/prs_cls.Tpo -c -o prs_cls.o prs_cls.cc mv -f .deps/sdo_utl.Tpo .deps/sdo_utl.Po g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/sw/include -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT NcapVar.o -MD -MP -MF .deps/NcapVar.Tpo -c -o NcapVar.o NcapVar.cc fmc_all_cls.cc:109:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:109:18: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_all_cls.cc:109:18: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_all_cls.cc:112:23: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:112:23: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_all_cls.cc:112:23: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_all_cls.cc:350:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:350:10: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_all_cls.cc:350:10: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_all_cls.cc:353:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:353:15: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_all_cls.cc:353:15: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_all_cls.cc:401:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ fmc_all_cls.cc:663:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:663:10: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_all_cls.cc:663:10: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_all_cls.cc:666:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:666:15: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_all_cls.cc:666:15: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == mv -f .deps/fmc_cls.Tpo .deps/fmc_cls.Po g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/sw/include -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT NcapVarVector.o -MD -MP -MF .deps/NcapVarVector.Tpo -c -o NcapVarVector.o NcapVarVector.cc fmc_all_cls.cc:849:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:849:10: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_all_cls.cc:849:10: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_all_cls.cc:852:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:852:15: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_all_cls.cc:852:15: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_all_cls.cc:910:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:910:10: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_all_cls.cc:910:10: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_all_cls.cc:913:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:913:15: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_all_cls.cc:913:15: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_all_cls.cc:1018:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:1018:18: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_all_cls.cc:1018:18: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_all_cls.cc:1021:23: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:1021:23: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_all_cls.cc:1021:23: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_all_cls.cc:1171:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:1171:10: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_all_cls.cc:1171:10: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_all_cls.cc:1174:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:1174:16: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_all_cls.cc:1174:16: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_all_cls.cc:1352:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:1352:10: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_all_cls.cc:1352:10: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_all_cls.cc:1355:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:1355:16: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_all_cls.cc:1355:16: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_all_cls.cc:1476:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:1476:10: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_all_cls.cc:1476:10: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_all_cls.cc:1479:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:1479:15: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_all_cls.cc:1479:15: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_all_cls.cc:1500:1: warning: control may reach end of non-void function [-Wreturn-type] } // end gsl_fit_cls::fnd ^ fmc_all_cls.cc:1632:19: warning: '&&' within '||' [-Wlogical-op-parentheses] if(bdef && prs_arg->ntl_scn || bdef && !prs_arg->ntl_scn && Nvar->flg_stt==2 ){ ~~~~~^~~~~~~~~~~~~~~~~~~ ~~ fmc_all_cls.cc:1632:19: note: place parentheses around the '&&' expression to silence this warning if(bdef && prs_arg->ntl_scn || bdef && !prs_arg->ntl_scn && Nvar->flg_stt==2 ){ ^ ( ) fmc_all_cls.cc:1632:68: warning: '&&' within '||' [-Wlogical-op-parentheses] if(bdef && prs_arg->ntl_scn || bdef && !prs_arg->ntl_scn && Nvar->flg_stt==2 ){ ~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:1632:68: note: place parentheses around the '&&' expression to silence this warning if(bdef && prs_arg->ntl_scn || bdef && !prs_arg->ntl_scn && Nvar->flg_stt==2 ){ ^ ( ) fmc_all_cls.cc:1800:22: warning: comparison of unsigned expression >= 0 is always true [-Wtautological-compare] if(lp_mp[jdx] >=0 && lp_mp[jdx]< sz ) ~~~~~~~~~~ ^ ~ fmc_all_cls.cc:1814:22: warning: comparison of unsigned expression >= 0 is always true [-Wtautological-compare] if(lp_mp[jdx] >=0 && lp_mp[jdx]< sz ) ~~~~~~~~~~ ^ ~ fmc_all_cls.cc:1875:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:1875:10: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_all_cls.cc:1875:10: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_all_cls.cc:1878:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:1878:15: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_all_cls.cc:1878:15: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_all_cls.cc:1956:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:1956:10: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_all_cls.cc:1956:10: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_all_cls.cc:1959:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:1959:15: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_all_cls.cc:1959:15: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_all_cls.cc:2137:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:2137:10: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_all_cls.cc:2137:10: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_all_cls.cc:2140:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:2140:15: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_all_cls.cc:2140:15: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_all_cls.cc:2252:3: warning: control may reach end of non-void function [-Wreturn-type] } // end fnc ^ fmc_all_cls.cc:2307:39: warning: '&&' within '||' [-Wlogical-op-parentheses] if(y_min==v_yin->sz || y_min==0L && v_yout->val.dp[jdx]< v_yin->val.dp[0] ) ~~ ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:2307:39: note: place parentheses around the '&&' expression to silence this warning if(y_min==v_yin->sz || y_min==0L && v_yout->val.dp[jdx]< v_yin->val.dp[0] ) ^ ( ) fmc_all_cls.cc:2337:41: warning: '&&' within '||' [-Wlogical-op-parentheses] if(x_min==v_xin->sz || x_min==0L && v_xout->val.dp[kdx]< v_xin->val.dp[0] ) ~~ ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:2337:41: note: place parentheses around the '&&' expression to silence this warning if(x_min==v_xin->sz || x_min==0L && v_xout->val.dp[kdx]< v_xin->val.dp[0] ) ^ ( ) fmc_all_cls.cc:2616:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:2616:10: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_all_cls.cc:2616:10: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_all_cls.cc:2619:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:2619:15: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_all_cls.cc:2619:15: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_all_cls.cc:2781:1: warning: '/*' within block comment [-Wcomment] /*****************************************************************************************************************/ ^ fmc_gsl_cls.cc:777:8: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_gsl_cls.cc:777:8: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_gsl_cls.cc:777:8: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_gsl_cls.cc:780:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_gsl_cls.cc:780:13: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_gsl_cls.cc:780:13: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == mv -f .deps/NcapVar.Tpo .deps/NcapVar.Po g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/sw/include -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT ncoLexer.o -MD -MP -MF .deps/ncoLexer.Tpo -c -o ncoLexer.o ncoLexer.cpp fmc_gsl_cls.cc:3776:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_gsl_cls.cc:3776:10: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_gsl_cls.cc:3776:10: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_gsl_cls.cc:3779:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_gsl_cls.cc:3779:15: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_gsl_cls.cc:3779:15: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_gsl_cls.cc:3885:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_gsl_cls.cc:3885:10: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_gsl_cls.cc:3885:10: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_gsl_cls.cc:3888:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_gsl_cls.cc:3888:15: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_gsl_cls.cc:3888:15: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_gsl_cls.cc:3952:74: warning: '&&' within '||' [-Wlogical-op-parentheses] if(var_arr[0]->type != var_arr[2]->type || var_arr[2]->type != NC_FLOAT && var_arr[2]->type != NC_DOUBLE ){ ~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fmc_gsl_cls.cc:3952:74: note: place parentheses around the '&&' expression to silence this warning if(var_arr[0]->type != var_arr[2]->type || var_arr[2]->type != NC_FLOAT && var_arr[2]->type != NC_DOUBLE ){ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fmc_gsl_cls.cc:4201:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_gsl_cls.cc:4201:10: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_gsl_cls.cc:4201:10: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_gsl_cls.cc:4204:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_gsl_cls.cc:4204:15: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_gsl_cls.cc:4204:15: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_gsl_cls.cc:4225:3: warning: control may reach end of non-void function [-Wreturn-type] } ^ mv -f .deps/prs_cls.Tpo .deps/prs_cls.Po g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/sw/include -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT ncoParser.o -MD -MP -MF .deps/ncoParser.Tpo -c -o ncoParser.o ncoParser.cpp fmc_gsl_cls.cc:4529:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) { ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_gsl_cls.cc:4529:10: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) { ^ ( ) fmc_gsl_cls.cc:4529:10: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) { ^ == fmc_gsl_cls.cc:4532:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_gsl_cls.cc:4532:15: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_gsl_cls.cc:4532:15: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == fmc_gsl_cls.cc:4553:1: warning: control may reach end of non-void function [-Wreturn-type] } // end gsl_fit_cls::fnd ^ fmc_gsl_cls.cc:5075:8: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=fargs->getFirstChild()) ~~^~~~~~~~~~~~~~~~~~~~~~~ fmc_gsl_cls.cc:5075:8: note: place parentheses around the assignment to silence this warning if(tr=fargs->getFirstChild()) ^ ( ) fmc_gsl_cls.cc:5075:8: note: use '==' to turn this assignment into an equality comparison if(tr=fargs->getFirstChild()) ^ == fmc_gsl_cls.cc:5079:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(tr=tr->getNextSibling()); ~~^~~~~~~~~~~~~~~~~~~~~ fmc_gsl_cls.cc:5079:13: note: place parentheses around the assignment to silence this warning while(tr=tr->getNextSibling()); ^ ( ) fmc_gsl_cls.cc:5079:13: note: use '==' to turn this assignment into an equality comparison while(tr=tr->getNextSibling()); ^ == mv -f .deps/NcapVarVector.Tpo .deps/NcapVarVector.Po g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/sw/include -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -g -O2 -MT ncoTree.o -MD -MP -MF .deps/ncoTree.Tpo -c -o ncoTree.o ncoTree.cpp mv -f .deps/Invoke.Tpo .deps/Invoke.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/sw/include -I/sw/include -I/sw/include -I/sw -I/sw/include -I/sw/include -I/sw/include -fno-common -g -O2 -std=c99 -D_BSD_SOURCE -MT nco_gsl.o -MD -MP -MF .deps/nco_gsl.Tpo -c -o nco_gsl.o nco_gsl.c mv -f .deps/ncap2.Tpo .deps/ncap2.Po mv -f .deps/nco_gsl.Tpo .deps/nco_gsl.Po ncoGrammer.g:593:14: warning: comparison between NULL and non-pointer ('int' and NULL) [-Wnull-arithmetic] if (*input==NULL) { ~~~~~~^ ~~~~ ncoGrammer.g:1069:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(tr=stmt3->getNextSibling()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~ ncoGrammer.g:1069:10: note: place parentheses around the assignment to silence this warning if(tr=stmt3->getNextSibling()) { ^ ( ) ncoGrammer.g:1069:10: note: use '==' to turn this assignment into an equality comparison if(tr=stmt3->getNextSibling()) { ^ == mv -f .deps/ncap2_utl.Tpo .deps/ncap2_utl.Po 1 warning generated. 15 warnings generated. 36 warnings generated. mv -f .deps/ncoParser.Tpo .deps/ncoParser.Po mv -f .deps/ncoLexer.Tpo .deps/ncoLexer.Po mv -f .deps/fmc_gsl_cls.Tpo .deps/fmc_gsl_cls.Po mv -f .deps/fmc_all_cls.Tpo .deps/fmc_all_cls.Po 1 warning generated. mv -f .deps/ncoTree.Tpo .deps/ncoTree.Po /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=link g++ -g -O2 -L../nco -L/sw/lib -lgsl -lgslcblas -L/sw/lib -lnetcdf -L/sw -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib -o ncap2 Invoke.o ncap2.o ncap2_utl.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o /sw/build.build/nco-4.4.4-1/nco-4.4.4/src/nco/.libs/libnco.dylib -lantlr -ludunits2 -lexpat -lgsl -lresolv -lm -lnetcdf -lnetcdf -L/sw/lib -lgsl -lgslcblas -ludunits2 libtool: link: g++ -g -O2 -Wl,-dead_strip_dylibs -o ncap2 Invoke.o ncap2.o ncap2_utl.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o /sw/build.build/nco-4.4.4-1/nco-4.4.4/src/nco/.libs/libnco.dylib -L../nco -L/sw/lib -L/sw -lantlr -lexpat -lresolv -lm /sw/lib/libnetcdf.dylib /sw/lib/libgsl.dylib /sw/lib/libgslcblas.dylib /sw/lib/libudunits2.dylib make[3]: Nothing to be done for `all-am'. Making all in man make[2]: Nothing to be done for `all'. Making all in doc restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (/bin/sh /sw/build.build/nco-4.4.4-1/nco-4.4.4/autobld/missing makeinfo --version) >/dev/null 2>&1; then \ for f in nco.info nco.info-[0-9] nco.info-[0-9][0-9] nco.i[0-9] nco.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if /bin/sh /sw/build.build/nco-4.4.4-1/nco-4.4.4/autobld/missing makeinfo -I . \ -o nco.info nco.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./nco.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc nco.texi:6418: warning: unlikely character ( in @var. nco.texi:6418: warning: unlikely character ) in @var. make[2]: Nothing to be done for `all-am'. fink-package-precedence --prohibit-bdep=nco-dap,nco-opendap,nco-netcdf,nco . Scanning /\.Plo,\.Po$/ dependency files... ./src/nco/.deps/mpncbo.Po ./src/nco/.deps/mpncecat.Po ./src/nco/.deps/mpncflint.Po ./src/nco/.deps/mpncpdq.Po ./src/nco/.deps/mpncra.Po ./src/nco/.deps/mpncwa.Po ./src/nco/.deps/ncap.Po ./src/nco/.deps/ncap_lex.Po ./src/nco/.deps/ncap_utl.Po ./src/nco/.deps/ncap_yacc.Po ./src/nco/.deps/ncatted.Po ./src/nco/.deps/ncbo.Po ./src/nco/.deps/ncecat.Po ./src/nco/.deps/ncflint.Po ./src/nco/.deps/ncks.Po ./src/nco/.deps/nco_att_utl.Plo ./src/nco/.deps/nco_aux.Plo ./src/nco/.deps/nco_bnr.Plo ./src/nco/.deps/nco_cln_utl.Plo ./src/nco/.deps/nco_cnf_dmn.Plo ./src/nco/.deps/nco_cnf_typ.Plo ./src/nco/.deps/nco_cnk.Plo ./src/nco/.deps/nco_cnv_arm.Plo ./src/nco/.deps/nco_cnv_csm.Plo ./src/nco/.deps/nco_ctl.Plo ./src/nco/.deps/nco_dbg.Plo ./src/nco/.deps/nco_dmn_utl.Plo ./src/nco/.deps/nco_fl_utl.Plo ./src/nco/.deps/nco_getopt.Plo ./src/nco/.deps/nco_grp_trv.Plo ./src/nco/.deps/nco_grp_utl.Plo ./src/nco/.deps/nco_lmt.Plo ./src/nco/.deps/nco_lst_utl.Plo ./src/nco/.deps/nco_md5.Plo ./src/nco/.deps/nco_mmr.Plo ./src/nco/.deps/nco_msa.Plo ./src/nco/.deps/nco_mss_val.Plo ./src/nco/.deps/nco_netcdf.Plo ./src/nco/.deps/nco_omp.Plo ./src/nco/.deps/nco_pck.Plo ./src/nco/.deps/nco_prn.Plo ./src/nco/.deps/nco_rec_var.Plo ./src/nco/.deps/nco_rth_flt.Plo ./src/nco/.deps/nco_rth_utl.Plo ./src/nco/.deps/nco_scl_utl.Plo ./src/nco/.deps/nco_scm.Plo ./src/nco/.deps/nco_sng_utl.Plo ./src/nco/.deps/nco_srm.Plo ./src/nco/.deps/nco_var_avg.Plo ./src/nco/.deps/nco_var_lst.Plo ./src/nco/.deps/nco_var_rth.Plo ./src/nco/.deps/nco_var_scv.Plo ./src/nco/.deps/nco_var_utl.Plo ./src/nco/.deps/ncpdq.Po ./src/nco/.deps/ncra.Po ./src/nco/.deps/ncrename.Po ./src/nco/.deps/ncwa.Po ./src/nco++/.deps/fmc_all_cls.Po ./src/nco++/.deps/fmc_cls.Po ./src/nco++/.deps/fmc_gsl_cls.Po ./src/nco++/.deps/Invoke.Po ./src/nco++/.deps/ncap2.Po ./src/nco++/.deps/ncap2_utl.Po ./src/nco++/.deps/NcapVar.Po ./src/nco++/.deps/NcapVarVector.Po ./src/nco++/.deps/nco_gsl.Po ./src/nco++/.deps/ncoLexer.Po ./src/nco++/.deps/ncoParser.Po ./src/nco++/.deps/ncoTree.Po ./src/nco++/.deps/prs_cls.Po ./src/nco++/.deps/sdo_utl.Po ./src/nco++/.deps/sym_cls.Po ./src/nco_c++/.deps/libnco_c___la-nco_att.Plo ./src/nco_c++/.deps/libnco_c___la-nco_dmn.Plo ./src/nco_c++/.deps/libnco_c___la-nco_fl.Plo ./src/nco_c++/.deps/libnco_c___la-nco_hgh.Plo ./src/nco_c++/.deps/libnco_c___la-nco_utl.Plo ./src/nco_c++/.deps/libnco_c___la-nco_var.Plo ./src/nco_c++/.deps/tst.Po Looking for incorrect headers in 79 dependency files... Determining fink providers of 148 headers... 1 - 100 101 - 148 Found use of headers from 4 fink packages: antlr gsl netcdf-c7 udunits2-dev Scanning binaries for incorrect dyld linking... /bin/rm -rf /sw/build.build/root-nco-4.4.4-1 /bin/mkdir -p /sw/build.build/root-nco-4.4.4-1/sw /bin/mkdir -p /sw/build.build/root-nco-4.4.4-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-nco-4.4.4-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.NbmVV make install DESTDIR=/sw/build.build/root-nco-4.4.4-1 Making install in data make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. Making install in src Making install in nco ../../autobld/install-sh -c -d '/sw/build.build/root-nco-4.4.4-1/sw/lib' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -c libnco.la '/sw/build.build/root-nco-4.4.4-1/sw/lib' libtool: install: /usr/bin/install -c .libs/libnco-4.4.4.dylib /sw/build.build/root-nco-4.4.4-1/sw/lib/libnco-4.4.4.dylib libtool: install: (cd /sw/build.build/root-nco-4.4.4-1/sw/lib && { ln -s -f libnco-4.4.4.dylib libnco.dylib || { rm -f libnco.dylib && ln -s libnco-4.4.4.dylib libnco.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libnco.lai /sw/build.build/root-nco-4.4.4-1/sw/lib/libnco.la libtool: install: warning: remember to run `libtool --finish /sw/lib' ../../autobld/install-sh -c -d '/sw/build.build/root-nco-4.4.4-1/sw/bin' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncap ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename ncwa '/sw/build.build/root-nco-4.4.4-1/sw/bin' libtool: install: warning: `libnco.la' has not been installed in `/sw/lib' libtool: install: /usr/bin/install -c .libs/ncap /sw/build.build/root-nco-4.4.4-1/sw/bin/ncap libtool: install: warning: `libnco.la' has not been installed in `/sw/lib' libtool: install: /usr/bin/install -c .libs/ncatted /sw/build.build/root-nco-4.4.4-1/sw/bin/ncatted libtool: install: warning: `libnco.la' has not been installed in `/sw/lib' libtool: install: /usr/bin/install -c .libs/ncbo /sw/build.build/root-nco-4.4.4-1/sw/bin/ncbo libtool: install: warning: `libnco.la' has not been installed in `/sw/lib' libtool: install: /usr/bin/install -c .libs/ncecat /sw/build.build/root-nco-4.4.4-1/sw/bin/ncecat libtool: install: warning: `libnco.la' has not been installed in `/sw/lib' libtool: install: /usr/bin/install -c .libs/ncflint /sw/build.build/root-nco-4.4.4-1/sw/bin/ncflint libtool: install: warning: `libnco.la' has not been installed in `/sw/lib' libtool: install: /usr/bin/install -c .libs/ncks /sw/build.build/root-nco-4.4.4-1/sw/bin/ncks libtool: install: warning: `libnco.la' has not been installed in `/sw/lib' libtool: install: /usr/bin/install -c .libs/ncpdq /sw/build.build/root-nco-4.4.4-1/sw/bin/ncpdq libtool: install: warning: `libnco.la' has not been installed in `/sw/lib' libtool: install: /usr/bin/install -c .libs/ncra /sw/build.build/root-nco-4.4.4-1/sw/bin/ncra libtool: install: warning: `libnco.la' has not been installed in `/sw/lib' libtool: install: /usr/bin/install -c .libs/ncrename /sw/build.build/root-nco-4.4.4-1/sw/bin/ncrename libtool: install: warning: `libnco.la' has not been installed in `/sw/lib' libtool: install: /usr/bin/install -c .libs/ncwa /sw/build.build/root-nco-4.4.4-1/sw/bin/ncwa /Applications/Xcode.app/Contents/Developer/usr/bin/make install-exec-hook cd /sw/build.build/root-nco-4.4.4-1/sw/bin && ln -s -f ncbo ncdiff || (rm -f ncdiff && ln -s -f ncbo ncdiff) cd /sw/build.build/root-nco-4.4.4-1/sw/bin && ln -s -f ncra ncea || (rm -f ncea && ln -s -f ncra ncea) cd /sw/build.build/root-nco-4.4.4-1/sw/bin && ln -s -f ncra nces || (rm -f nces && ln -s -f ncra nces) cd /sw/build.build/root-nco-4.4.4-1/sw/bin && ln -s -f ncra ncrcat || (rm -f ncrcat && ln -s -f ncra ncrcat) make[3]: Nothing to be done for `install-data-am'. Making install in nco_c++ ../../autobld/install-sh -c -d '/sw/build.build/root-nco-4.4.4-1/sw/lib' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -c libnco_c++.la '/sw/build.build/root-nco-4.4.4-1/sw/lib' libtool: install: /usr/bin/install -c .libs/libnco_c++-4.4.4.dylib /sw/build.build/root-nco-4.4.4-1/sw/lib/libnco_c++-4.4.4.dylib libtool: install: (cd /sw/build.build/root-nco-4.4.4-1/sw/lib && { ln -s -f libnco_c++-4.4.4.dylib libnco_c++.dylib || { rm -f libnco_c++.dylib && ln -s libnco_c++-4.4.4.dylib libnco_c++.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libnco_c++.lai /sw/build.build/root-nco-4.4.4-1/sw/lib/libnco_c++.la libtool: install: warning: remember to run `libtool --finish /sw/lib' ../../autobld/install-sh -c -d '/sw/build.build/root-nco-4.4.4-1/sw/include' /usr/bin/install -c -m 644 libnco_c++.hh nco_dmn.hh nco_hgh.hh nco_var.hh nco_att.hh nco_fl.hh nco_utl.hh '/sw/build.build/root-nco-4.4.4-1/sw/include' Making install in nco++ ../../autobld/install-sh -c -d '/sw/build.build/root-nco-4.4.4-1/sw/bin' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncap2 '/sw/build.build/root-nco-4.4.4-1/sw/bin' libtool: install: /usr/bin/install -c ncap2 /sw/build.build/root-nco-4.4.4-1/sw/bin/ncap2 make[3]: Nothing to be done for `install-data-am'. make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. Making install in man make[2]: Nothing to be done for `install-exec-am'. ../autobld/install-sh -c -d '/sw/build.build/root-nco-4.4.4-1/sw/share/man/man1' /usr/bin/install -c -m 644 ncap.1 ncap2.1 ncatted.1 ncbo.1 ncdiff.1 ncea.1 nces.1 ncecat.1 ncflint.1 ncks.1 nco.1 ncra.1 ncrename.1 ncpdq.1 ncrcat.1 ncwa.1 '/sw/build.build/root-nco-4.4.4-1/sw/share/man/man1' Making install in doc make[2]: Nothing to be done for `install-exec-am'. ../autobld/install-sh -c -d '/sw/build.build/root-nco-4.4.4-1/sw/share/info' /usr/bin/install -c -m 644 ./nco.info ./nco.info-1 ./nco.info-2 ./nco.info-3 '/sw/build.build/root-nco-4.4.4-1/sw/share/info' install-info --info-dir='/sw/build.build/root-nco-4.4.4-1/sw/share/info' '/sw/build.build/root-nco-4.4.4-1/sw/share/info/nco.info' install-info(/sw/build.build/root-nco-4.4.4-1/sw/share/info/nco.info): no file /sw/build.build/root-nco-4.4.4-1/sw/share/info/dir, retrieving backup file /sw/share/info/dir.bak. * NCO: (nco). User Guide for the netCDF Operator suite install-info(/sw/build.build/root-nco-4.4.4-1/sw/share/info/nco.info): creating new section `netCDF' cp: /sw/share/info/dir.bak: Permission denied install-info(/sw/build.build/root-nco-4.4.4-1/sw/share/info/nco.info): couldn't backup /sw/build.build/root-nco-4.4.4-1/sw/share/info/dir in /sw/share/info/dir.bak: No such file or directory make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. sudo -u fink-bld [ENV] sh -c /tmp/fink.FroRE /usr/bin/install -d -m 700 /sw/build.build/root-nco-4.4.4-1/sw/share/doc/nco /bin/cp -r doc/* /sw/build.build/root-nco-4.4.4-1/sw/share/doc/nco/ /bin/chmod -R go=u-w /sw/build.build/root-nco-4.4.4-1/sw/share/doc/nco /bin/rm -f /sw/build.build/root-nco-4.4.4-1/sw/info/dir /sw/build.build/root-nco-4.4.4-1/sw/info/dir.old /sw/build.build/root-nco-4.4.4-1/sw/share/info/dir /sw/build.build/root-nco-4.4.4-1/sw/share/info/dir.old /bin/rm -rf /sw/build.build/root-nco444-shlibs-4.4.4-1 /bin/mkdir -p /sw/build.build/root-nco444-shlibs-4.4.4-1/sw /bin/mkdir -p /sw/build.build/root-nco444-shlibs-4.4.4-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-nco444-shlibs-4.4.4-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.2ZuFH /usr/bin/install -d -m 755 /sw/build.build/root-nco444-shlibs-4.4.4-1/sw/lib /bin/mv /sw/build.build/root-nco-4.4.4-1/sw/lib/libnco*4.4.4.dylib /sw/build.build/root-nco444-shlibs-4.4.4-1/sw/lib/ /usr/bin/install -d -m 700 /sw/build.build/root-nco444-shlibs-4.4.4-1/sw/share/doc/nco444-shlibs /bin/cp -r doc/LICENSE /sw/build.build/root-nco444-shlibs-4.4.4-1/sw/share/doc/nco444-shlibs/ /bin/chmod -R go=u-w /sw/build.build/root-nco444-shlibs-4.4.4-1/sw/share/doc/nco444-shlibs /bin/rm -f /sw/build.build/root-nco444-shlibs-4.4.4-1/sw/info/dir /sw/build.build/root-nco444-shlibs-4.4.4-1/sw/info/dir.old /sw/build.build/root-nco444-shlibs-4.4.4-1/sw/share/info/dir /sw/build.build/root-nco444-shlibs-4.4.4-1/sw/share/info/dir.old /bin/rm -rf /sw/build.build/root-nco444-dev-4.4.4-1 /bin/mkdir -p /sw/build.build/root-nco444-dev-4.4.4-1/sw /bin/mkdir -p /sw/build.build/root-nco444-dev-4.4.4-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-nco444-dev-4.4.4-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.YTlQB /usr/bin/install -d -m 755 /sw/build.build/root-nco444-dev-4.4.4-1/sw /bin/mv /sw/build.build/root-nco-4.4.4-1/sw/include /sw/build.build/root-nco444-dev-4.4.4-1/sw/ /bin/mv /sw/build.build/root-nco-4.4.4-1/sw/lib /sw/build.build/root-nco444-dev-4.4.4-1/sw/ /usr/bin/install -d -m 700 /sw/build.build/root-nco444-dev-4.4.4-1/sw/share/doc/nco444-dev /bin/cp -r doc/LICENSE /sw/build.build/root-nco444-dev-4.4.4-1/sw/share/doc/nco444-dev/ /bin/chmod -R go=u-w /sw/build.build/root-nco444-dev-4.4.4-1/sw/share/doc/nco444-dev /bin/rm -f /sw/build.build/root-nco444-dev-4.4.4-1/sw/info/dir /sw/build.build/root-nco444-dev-4.4.4-1/sw/info/dir.old /sw/build.build/root-nco444-dev-4.4.4-1/sw/share/info/dir /sw/build.build/root-nco444-dev-4.4.4-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing package script postinst... Writing package script prerm... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-nco-4.4.4-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `nco' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/nco_4.4.4-1_darwin-x86_64.deb'. Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-nco444-shlibs-4.4.4-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `nco444-shlibs' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/nco444-shlibs_4.4.4-1_darwin-x86_64.deb'. Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-nco444-dev-4.4.4-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `nco444-dev' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/nco444-dev_4.4.4-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-nco-4.4.4-1 (Reading database ... 5805 files and directories currently installed.) Removing fink-buildlock-nco-4.4.4-1 ...