printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild nifticlib2-shlibs 2>&1 The package 'nifticlib2-shlibs' will be built without being installed. Reading build dependency for nifticlib2-shlibs-2.0.0-1... Reading dependency for nifticlib2-shlibs-2.0.0-1... Reading dependency for nifticlib2-dev-2.0.0-1... Reading dependency for nifticlib-2.0.0-1... Reading build conflict for nifticlib2-shlibs-2.0.0-1... The package 'cmake' will be installed. Reading dependency for cmake-2.8.12-2... Reading runtime dependency for cmake-2.8.12-2... The package 'libidn-shlibs' will be installed. Reading dependency for libidn-shlibs-1.22-6... Reading runtime dependency for libidn-shlibs-1.22-6... The following package will be rebuilt: nifticlib2-shlibs The following 2 additional packages will be installed: cmake libidn-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/nifticlib-2.0.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 252k 100 252k 0 0 333k 0 --:--:-- --:--:-- --:--:-- 333k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libidn-shlibs_1.22-6_darwin-x86_64.deb Selecting previously deselected package libidn-shlibs. (Reading database ... 4740 files and directories currently installed.) Unpacking libidn-shlibs (from .../libidn-shlibs_1.22-6_darwin-x86_64.deb) ... Setting up libidn-shlibs (1.22-6) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cmake_2.8.12-2_darwin-x86_64.deb Selecting previously deselected package cmake. (Reading database ... 4741 files and directories currently installed.) Unpacking cmake (from .../cmake_2.8.12-2_darwin-x86_64.deb) ... Setting up cmake (2.8.12-2) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-nifticlib2-shlibs-2.0.0-1 /sw/build.build dpkg-deb: building package `fink-buildlock-nifticlib2-shlibs-2.0.0-1' in `/sw/build.build/fink-buildlock-nifticlib2-shlibs-2.0.0-1_2014.08.04-19.44.01_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-nifticlib2-shlibs-2.0.0-1_2014.08.04-19.44.01_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-nifticlib2-shlibs-2.0.0-1. (Reading database ... 5471 files and directories currently installed.) Unpacking fink-buildlock-nifticlib2-shlibs-2.0.0-1 (from .../fink-buildlock-nifticlib2-shlibs-2.0.0-1_2014.08.04-19.44.01_darwin-x86_64.deb) ... Setting up fink-buildlock-nifticlib2-shlibs-2.0.0-1 (2014.08.04-19.44.01) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.DGRZX env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/nifticlib-2.0.0.tar.gz nifticlib-2.0.0/bin/ nifticlib-2.0.0/CMakeLists.txt nifticlib-2.0.0/CTestConfig.cmake nifticlib-2.0.0/docs/ nifticlib-2.0.0/docs/Doxy_nifti.txt nifticlib-2.0.0/docs/Doxyfile.ORIG nifticlib-2.0.0/examples/ nifticlib-2.0.0/examples/clib_01_read_write.c nifticlib-2.0.0/examples/CMakeLists.txt nifticlib-2.0.0/examples/Makefile nifticlib-2.0.0/examples/fsl_api_driver.c nifticlib-2.0.0/fsliolib/ nifticlib-2.0.0/fsliolib/imtest nifticlib-2.0.0/fsliolib/fslio.tcl nifticlib-2.0.0/fsliolib/fslio.c nifticlib-2.0.0/fsliolib/imglob nifticlib-2.0.0/fsliolib/CMakeLists.txt nifticlib-2.0.0/fsliolib/imrm nifticlib-2.0.0/fsliolib/remove_ext nifticlib-2.0.0/fsliolib/Makefile nifticlib-2.0.0/fsliolib/immv nifticlib-2.0.0/fsliolib/imln nifticlib-2.0.0/fsliolib/fslio.h nifticlib-2.0.0/fsliolib/dbh.h nifticlib-2.0.0/fsliolib/imcp nifticlib-2.0.0/include/ nifticlib-2.0.0/lib/ nifticlib-2.0.0/LICENSE nifticlib-2.0.0/Makefile nifticlib-2.0.0/Makefile.cross_mingw32 nifticlib-2.0.0/nifticdf/ nifticlib-2.0.0/nifticdf/nifticdf.c nifticlib-2.0.0/nifticdf/nifticdf.h nifticlib-2.0.0/nifticdf/CMakeLists.txt nifticlib-2.0.0/nifticdf/Makefile nifticlib-2.0.0/niftilib/ nifticlib-2.0.0/niftilib/nifti1.h nifticlib-2.0.0/niftilib/nifti1_io.c nifticlib-2.0.0/niftilib/CMakeLists.txt nifticlib-2.0.0/niftilib/Makefile nifticlib-2.0.0/niftilib/nifti1_io.h nifticlib-2.0.0/packaging/ nifticlib-2.0.0/packaging/nifticlib.spec nifticlib-2.0.0/packaging/DevPackage.template nifticlib-2.0.0/README nifticlib-2.0.0/real_easy/ nifticlib-2.0.0/real_easy/nifti1_read_write.c nifticlib-2.0.0/Testing/ nifticlib-2.0.0/Testing/nifti.regress_test/ nifticlib-2.0.0/Testing/nifti.regress_test/commands/ nifticlib-2.0.0/Testing/README_regress nifticlib-2.0.0/Testing/CMakeLists.txt nifticlib-2.0.0/Testing/Data/ nifticlib-2.0.0/Testing/Data/ATestReferenceImageForReadingAndWriting.nii.gz nifticlib-2.0.0/Testing/Makefile nifticlib-2.0.0/Testing/nifti_regress_test/ nifticlib-2.0.0/Testing/nifti_regress_test/@show.diffs nifticlib-2.0.0/Testing/nifti_regress_test/CMakeLists.txt nifticlib-2.0.0/Testing/nifti_regress_test/@test nifticlib-2.0.0/Testing/nifti_regress_test/commands/ nifticlib-2.0.0/Testing/nifti_regress_test/commands/c17.file.case nifticlib-2.0.0/Testing/nifti_regress_test/commands/c02.nt.help nifticlib-2.0.0/Testing/nifti_regress_test/commands/c04.disp.anat0.info nifticlib-2.0.0/Testing/nifti_regress_test/commands/c14.make.dsets nifticlib-2.0.0/Testing/nifti_regress_test/commands/c16.rand.swap nifticlib-2.0.0/Testing/nifti_regress_test/commands/c12.check.comments nifticlib-2.0.0/Testing/nifti_regress_test/commands/c13.check.hdrs nifticlib-2.0.0/Testing/nifti_regress_test/commands/c10a.dci.run.210 nifticlib-2.0.0/Testing/nifti_regress_test/commands/c10.dci.ts4 nifticlib-2.0.0/Testing/nifti_regress_test/commands/c09.dts4.compare nifticlib-2.0.0/Testing/nifti_regress_test/commands/c05.mod.hdr nifticlib-2.0.0/Testing/nifti_regress_test/commands/c01.versions nifticlib-2.0.0/Testing/nifti_regress_test/commands/c06.add.ext nifticlib-2.0.0/Testing/nifti_regress_test/commands/c08.dts.19.36.11 nifticlib-2.0.0/Testing/nifti_regress_test/commands/c11.add.comment nifticlib-2.0.0/Testing/nifti_regress_test/commands/c03.hist nifticlib-2.0.0/Testing/nifti_regress_test/commands/c07.cbl.4bricks nifticlib-2.0.0/Testing/nifti_regress_test/commands/c15.new.files nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/ nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/newfiles_test.sh nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/bricks_test.sh nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/dts_test.sh nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/fetch_data_test.sh nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/dci_test.sh nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/comment_test.sh nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/dsets_test.sh nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/mod_header_test.sh nifticlib-2.0.0/Testing/niftilib/ nifticlib-2.0.0/Testing/niftilib/CMakeLists.txt nifticlib-2.0.0/Testing/niftilib/nifti_test.c nifticlib-2.0.0/Testing/niftilib/nifti_test2.c nifticlib-2.0.0/Updates.txt nifticlib-2.0.0/utils/ nifticlib-2.0.0/utils/nifti_tool.h nifticlib-2.0.0/utils/nifti_tool.c nifticlib-2.0.0/utils/CMakeLists.txt nifticlib-2.0.0/utils/Makefile nifticlib-2.0.0/utils/nifti_stats.c nifticlib-2.0.0/utils/nifti1_test.c nifticlib-2.0.0/znzlib/ nifticlib-2.0.0/znzlib/znzlib.h nifticlib-2.0.0/znzlib/CMakeLists.txt nifticlib-2.0.0/znzlib/Makefile nifticlib-2.0.0/znzlib/znzlib.c sudo -u fink-bld [ENV] sh -c /tmp/fink.fdZiU cmake -DCMAKE_INSTALL_PREFIX:PATH=/sw -DCMAKE_INSTALL_NAME_DIR:PATH=/sw/lib -DBUILD_SHARED_LIBS:BOOL=ON CMake Warning (dev) in CMakeLists.txt: Syntax Warning in cmake code at /sw/build.build/nifticlib2-shlibs-2.0.0-1/nifticlib-2.0.0/CMakeLists.txt:96:38 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in CMakeLists.txt: Syntax Warning in cmake code at /sw/build.build/nifticlib2-shlibs-2.0.0-1/nifticlib-2.0.0/CMakeLists.txt:96:39 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is Clang 5.1.0 -- The CXX compiler identification is Clang 5.1.0 -- Check for working C compiler: /sw/var/lib/fink/path-prefix-clang/cc -- Check for working C compiler: /sw/var/lib/fink/path-prefix-clang/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /sw/var/lib/fink/path-prefix-clang/c++ -- Check for working CXX compiler: /sw/var/lib/fink/path-prefix-clang/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Found ZLIB: /usr/lib/libz.dylib (found version "1.2.5") CMake Warning (dev) in CMakeLists.txt: No cmake_minimum_required command is present. A line of code such as cmake_minimum_required(VERSION 2.8) should be added at the top of the file. The version specified may be lower if you wish to support older CMake versions for this project. For more information run "cmake --help-policy CMP0000". This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done CMake Warning (dev) at niftilib/CMakeLists.txt:9 (ADD_LIBRARY): Policy CMP0003 should be set before this line. Add code such as if(COMMAND cmake_policy) cmake_policy(SET CMP0003 NEW) endif(COMMAND cmake_policy) as early as possible but after the most recent call to cmake_minimum_required or cmake_policy(VERSION). This warning appears because target "niftiio" links to some libraries for which the linker must search: -lm and other libraries with known full path: /sw/build.build/nifticlib2-shlibs-2.0.0-1/nifticlib-2.0.0/znzlib/libznz.2.0.0.dylib /usr/lib/libz.dylib CMake is adding directories in the second list to the linker search path in case they are needed to find libraries from the first list (for backwards compatibility with CMake 2.4). Set policy CMP0003 to OLD or NEW to enable or disable this behavior explicitly. Run "cmake --help-policy CMP0003" for more information. This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done -- Build files have been written to: /sw/build.build/nifticlib2-shlibs-2.0.0-1/nifticlib-2.0.0 make Scanning dependencies of target znz Scanning dependencies of target nifticdf [ 12%] [ 25%] Building C object znzlib/CMakeFiles/znz.dir/znzlib.o Building C object nifticdf/CMakeFiles/nifticdf.dir/nifticdf.o Linking C shared library libznz.dylib [ 25%] Built target znz Scanning dependencies of target niftiio [ 37%] Building C object niftilib/CMakeFiles/niftiio.dir/nifti1_io.o Linking C shared library libnifticdf.dylib [ 37%] Built target nifticdf Linking C shared library libniftiio.dylib [ 37%] Built target niftiio Scanning dependencies of target nifti_stats Scanning dependencies of target second_test Scanning dependencies of target first_test Scanning dependencies of target nifti1_test Scanning dependencies of target nifti_tool [ 50%] [ 75%] [ 75%] [ 87%] [100%] Building C object Testing/niftilib/CMakeFiles/first_test.dir/nifti_test.o Building C object Testing/niftilib/CMakeFiles/second_test.dir/nifti_test2.o Building C object utils/CMakeFiles/nifti_stats.dir/nifti_stats.o Building C object utils/CMakeFiles/nifti1_test.dir/nifti1_test.o Building C object utils/CMakeFiles/nifti_tool.dir/nifti_tool.o Linking C executable nifti_stats Linking C executable second_test Linking C executable nifti1_test [100%] Built target nifti_stats [100%] Built target second_test [100%] Built target nifti1_test Linking C executable first_test [100%] Built target first_test Linking C executable nifti_tool [100%] Built target nifti_tool /bin/rm -rf /sw/build.build/root-nifticlib2-shlibs-2.0.0-1 /bin/mkdir -p /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw /bin/mkdir -p /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-nifticlib2-shlibs-2.0.0-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.DXzHU make install DESTDIR=/sw/build.build/root-nifticlib2-shlibs-2.0.0-1 [ 12%] Built target znz [ 25%] Built target niftiio [ 37%] Built target nifticdf [ 50%] Built target nifti1_test [ 62%] Built target nifti_stats [ 75%] Built target nifti_tool [ 87%] Built target first_test [100%] Built target second_test Install the project... -- Install configuration: "" -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/lib/libznz.2.0.0.dylib -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/lib/libznz.2.dylib -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/lib/libznz.dylib -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/include/nifti/znzlib.h -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/lib/libniftiio.2.0.0.dylib -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/lib/libniftiio.2.dylib -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/lib/libniftiio.dylib -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/include/nifti/nifti1.h -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/include/nifti/nifti1_io.h -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/lib/libnifticdf.2.0.0.dylib -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/lib/libnifticdf.2.dylib -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/lib/libnifticdf.dylib -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/include/nifti/nifticdf.h -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/bin/nifti_stats -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/bin/nifti_tool -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/bin/nifti1_test -- Installing: /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/include/nifti/nifti_tool.h sudo -u fink-bld [ENV] sh -c /tmp/fink.O86NN /usr/bin/install -d -m 700 /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/share/doc/nifticlib2-shlibs /bin/cp -r LICENSE /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/share/doc/nifticlib2-shlibs/ /bin/cp -r README /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/share/doc/nifticlib2-shlibs/ /bin/chmod -R go=u-w /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/share/doc/nifticlib2-shlibs /bin/rm -f /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/info/dir /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/info/dir.old /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/share/info/dir /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/share/info/dir.old /bin/rm -rf /sw/build.build/root-nifticlib2-dev-2.0.0-1 /bin/mkdir -p /sw/build.build/root-nifticlib2-dev-2.0.0-1/sw /bin/mkdir -p /sw/build.build/root-nifticlib2-dev-2.0.0-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-nifticlib2-dev-2.0.0-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.eGYld /usr/bin/install -d -m 755 /sw/build.build/root-nifticlib2-dev-2.0.0-1/sw /bin/mv /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/include /sw/build.build/root-nifticlib2-dev-2.0.0-1/sw/ /usr/bin/install -d -m 755 /sw/build.build/root-nifticlib2-dev-2.0.0-1/sw/lib /bin/mv /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/lib/libnifticdf.dylib /sw/build.build/root-nifticlib2-dev-2.0.0-1/sw/lib/ /bin/mv /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/lib/libniftiio.dylib /sw/build.build/root-nifticlib2-dev-2.0.0-1/sw/lib/ /bin/mv /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/lib/libznz.dylib /sw/build.build/root-nifticlib2-dev-2.0.0-1/sw/lib/ /usr/bin/install -d -m 700 /sw/build.build/root-nifticlib2-dev-2.0.0-1/sw/share/doc/nifticlib2-dev /bin/cp -r LICENSE /sw/build.build/root-nifticlib2-dev-2.0.0-1/sw/share/doc/nifticlib2-dev/ /bin/cp -r README /sw/build.build/root-nifticlib2-dev-2.0.0-1/sw/share/doc/nifticlib2-dev/ /bin/chmod -R go=u-w /sw/build.build/root-nifticlib2-dev-2.0.0-1/sw/share/doc/nifticlib2-dev /bin/rm -f /sw/build.build/root-nifticlib2-dev-2.0.0-1/sw/info/dir /sw/build.build/root-nifticlib2-dev-2.0.0-1/sw/info/dir.old /sw/build.build/root-nifticlib2-dev-2.0.0-1/sw/share/info/dir /sw/build.build/root-nifticlib2-dev-2.0.0-1/sw/share/info/dir.old /bin/rm -rf /sw/build.build/root-nifticlib-2.0.0-1 /bin/mkdir -p /sw/build.build/root-nifticlib-2.0.0-1/sw /bin/mkdir -p /sw/build.build/root-nifticlib-2.0.0-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-nifticlib-2.0.0-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.6SqPm /usr/bin/install -d -m 755 /sw/build.build/root-nifticlib-2.0.0-1/sw /bin/mv /sw/build.build/root-nifticlib2-shlibs-2.0.0-1/sw/bin /sw/build.build/root-nifticlib-2.0.0-1/sw/ /usr/bin/install -d -m 700 /sw/build.build/root-nifticlib-2.0.0-1/sw/share/doc/nifticlib /bin/cp -r LICENSE /sw/build.build/root-nifticlib-2.0.0-1/sw/share/doc/nifticlib/ /bin/cp -r README /sw/build.build/root-nifticlib-2.0.0-1/sw/share/doc/nifticlib/ /bin/chmod -R go=u-w /sw/build.build/root-nifticlib-2.0.0-1/sw/share/doc/nifticlib /bin/rm -f /sw/build.build/root-nifticlib-2.0.0-1/sw/info/dir /sw/build.build/root-nifticlib-2.0.0-1/sw/info/dir.old /sw/build.build/root-nifticlib-2.0.0-1/sw/share/info/dir /sw/build.build/root-nifticlib-2.0.0-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-nifticlib2-shlibs-2.0.0-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `nifticlib2-shlibs' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/nifticlib2-shlibs_2.0.0-1_darwin-x86_64.deb'. Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-nifticlib2-dev-2.0.0-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `nifticlib2-dev' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/nifticlib2-dev_2.0.0-1_darwin-x86_64.deb'. Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-nifticlib-2.0.0-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `nifticlib' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/nifticlib_2.0.0-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-nifticlib2-shlibs-2.0.0-1 (Reading database ... 5472 files and directories currently installed.) Removing fink-buildlock-nifticlib2-shlibs-2.0.0-1 ...