printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild openbabel-py27 2>&1 The package 'openbabel-py27' will be built without being installed. Reading build dependency for openbabel-py27-2.2.3-11... Reading dependency for openbabel-py27-2.2.3-11... Reading build conflict for openbabel-py27-2.2.3-11... The package 'libopenbabel3-dev' will be installed. Reading dependency for libopenbabel3-dev-2.2.3-11... Reading runtime dependency for libopenbabel3-dev-2.2.3-11... The package 'libopenbabel3-shlibs' will be installed. Reading dependency for libopenbabel3-shlibs-2.2.3-11... Reading runtime dependency for libopenbabel3-shlibs-2.2.3-11... The package 'python27' will be installed. Reading dependency for python27-2.7.8-1... Reading runtime dependency for python27-2.7.8-1... The package 'libstdinchi1-shlibs' will be installed. Reading dependency for libstdinchi1-shlibs-1.02-2... Reading runtime dependency for libstdinchi1-shlibs-1.02-2... The package 'python27-shlibs' will be installed. Reading dependency for python27-shlibs-2.7.8-1... Reading runtime dependency for python27-shlibs-2.7.8-1... The package 'blt-shlibs' will be installed. Reading dependency for blt-shlibs-2.4z-160... Reading runtime dependency for blt-shlibs-2.4z-160... The package 'db53-aes-shlibs' will be installed. Reading dependency for db53-aes-shlibs-5.3.21-2... Reading runtime dependency for db53-aes-shlibs-5.3.21-2... The package 'gdbm3-shlibs' will be installed. Reading dependency for gdbm3-shlibs-1.8.3-4... Reading runtime dependency for gdbm3-shlibs-1.8.3-4... The package 'libffi6-shlibs' will be installed. Reading dependency for libffi6-shlibs-3.1-1... Reading runtime dependency for libffi6-shlibs-3.1-1... The package 'libncursesw5-shlibs' will be installed. Reading dependency for libncursesw5-shlibs-5.9-20110507-1... Reading runtime dependency for libncursesw5-shlibs-5.9-20110507-1... The package 'openssl100-shlibs' will be installed. Reading dependency for openssl100-shlibs-1.0.1h-1... Reading runtime dependency for openssl100-shlibs-1.0.1h-1... The package 'sqlite3-shlibs' will be installed. Reading dependency for sqlite3-shlibs-3.8.3.1-1... Reading runtime dependency for sqlite3-shlibs-3.8.3.1-1... The following package will be rebuilt: openbabel-py27 The following 12 additional packages will be installed: blt-shlibs db53-aes-shlibs gdbm3-shlibs libffi6-shlibs libncursesw5-shlibs libopenbabel3-dev libopenbabel3-shlibs libstdinchi1-shlibs openssl100-shlibs python27 python27-shlibs sqlite3-shlibs Do you want to continue? [Y/n] (assuming default) Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/blt-shlibs_2.4z-160_darwin-x86_64.deb Selecting previously deselected package blt-shlibs. (Reading database ... 7828 files and directories currently installed.) Unpacking blt-shlibs (from .../blt-shlibs_2.4z-160_darwin-x86_64.deb) ... Setting up blt-shlibs (2.4z-160) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/crypto/db53-aes-shlibs_5.3.21-2_darwin-x86_64.deb Selecting previously deselected package db53-aes-shlibs. (Reading database ... 7834 files and directories currently installed.) Unpacking db53-aes-shlibs (from .../db53-aes-shlibs_5.3.21-2_darwin-x86_64.deb) ... Setting up db53-aes-shlibs (5.3.21-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/gdbm3-shlibs_1.8.3-4_darwin-x86_64.deb Selecting previously deselected package gdbm3-shlibs. (Reading database ... 7844 files and directories currently installed.) Unpacking gdbm3-shlibs (from .../gdbm3-shlibs_1.8.3-4_darwin-x86_64.deb) ... Setting up gdbm3-shlibs (1.8.3-4) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libffi6-shlibs_3.1-1_darwin-x86_64.deb Selecting previously deselected package libffi6-shlibs. (Reading database ... 7852 files and directories currently installed.) Unpacking libffi6-shlibs (from .../libffi6-shlibs_3.1-1_darwin-x86_64.deb) ... Setting up libffi6-shlibs (3.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/libncursesw5-shlibs_5.9-20110507-1_darwin-x86_64.deb Selecting previously deselected package libncursesw5-shlibs. (Reading database ... 7853 files and directories currently installed.) Unpacking libncursesw5-shlibs (from .../libncursesw5-shlibs_5.9-20110507-1_darwin-x86_64.deb) ... Setting up libncursesw5-shlibs (5.9-20110507-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/libstdinchi1-shlibs_1.02-2_darwin-x86_64.deb Selecting previously deselected package libstdinchi1-shlibs. (Reading database ... 7864 files and directories currently installed.) Unpacking libstdinchi1-shlibs (from .../libstdinchi1-shlibs_1.02-2_darwin-x86_64.deb) ... Setting up libstdinchi1-shlibs (1.02-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb Selecting previously deselected package openssl100-shlibs. (Reading database ... 7869 files and directories currently installed.) Unpacking openssl100-shlibs (from .../openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb) ... Setting up openssl100-shlibs (1.0.1h-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/database/sqlite3-shlibs_3.8.3.1-1_darwin-x86_64.deb Selecting previously deselected package sqlite3-shlibs. (Reading database ... 7890 files and directories currently installed.) Unpacking sqlite3-shlibs (from .../sqlite3-shlibs_3.8.3.1-1_darwin-x86_64.deb) ... Setting up sqlite3-shlibs (3.8.3.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/libopenbabel3-dev_2.2.3-11_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/libopenbabel3-shlibs_2.2.3-11_darwin-x86_64.deb Selecting previously deselected package libopenbabel3-dev. (Reading database ... 7894 files and directories currently installed.) Unpacking libopenbabel3-dev (from .../libopenbabel3-dev_2.2.3-11_darwin-x86_64.deb) ... Selecting previously deselected package libopenbabel3-shlibs. Unpacking libopenbabel3-shlibs (from .../libopenbabel3-shlibs_2.2.3-11_darwin-x86_64.deb) ... Setting up libopenbabel3-shlibs (2.2.3-11) ... Clearing dependency_libs of .la files being installed Setting up libopenbabel3-dev (2.2.3-11) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/python27_2.7.8-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/python27-shlibs_2.7.8-1_darwin-x86_64.deb Selecting previously deselected package python27. (Reading database ... 8170 files and directories currently installed.) Unpacking python27 (from .../python27_2.7.8-1_darwin-x86_64.deb) ... Selecting previously deselected package python27-shlibs. Unpacking python27-shlibs (from .../python27-shlibs_2.7.8-1_darwin-x86_64.deb) ... Setting up python27-shlibs (2.7.8-1) ... Setting up python27 (2.7.8-1) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-openbabel-py27-2.2.3-11 /sw/build.build dpkg-deb: building package `fink-buildlock-openbabel-py27-2.2.3-11' in `/sw/build.build/fink-buildlock-openbabel-py27-2.2.3-11_2014.08.07-01.13.58_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-openbabel-py27-2.2.3-11_2014.08.07-01.13.58_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-openbabel-py27-2.2.3-11. (Reading database ... 15381 files and directories currently installed.) Unpacking fink-buildlock-openbabel-py27-2.2.3-11 (from .../fink-buildlock-openbabel-py27-2.2.3-11_2014.08.07-01.13.58_darwin-x86_64.deb) ... Setting up fink-buildlock-openbabel-py27-2.2.3-11 (2014.08.07-01.13.58) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.7mYrn env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/openbabel-2.2.3.tar.gz openbabel-2.2.3/ openbabel-2.2.3/acinclude.m4 openbabel-2.2.3/aclocal.m4 openbabel-2.2.3/AUTHORS openbabel-2.2.3/autoconf/ openbabel-2.2.3/autoconf/libtool.m4 openbabel-2.2.3/autoconf/ltoptions.m4 openbabel-2.2.3/autoconf/ltsugar.m4 openbabel-2.2.3/autoconf/ltversion.m4 openbabel-2.2.3/autoconf/lt~obsolete.m4 openbabel-2.2.3/ChangeLog openbabel-2.2.3/cmake/ openbabel-2.2.3/cmake/modules/ openbabel-2.2.3/cmake/modules/MacroEnsureVersion.cmake openbabel-2.2.3/CMakeLists.txt openbabel-2.2.3/config.guess openbabel-2.2.3/config.sub openbabel-2.2.3/configure openbabel-2.2.3/configure.in openbabel-2.2.3/COPYING openbabel-2.2.3/data/ openbabel-2.2.3/data/aromatic.h openbabel-2.2.3/data/aromatic.txt openbabel-2.2.3/data/atomtyp.h openbabel-2.2.3/data/atomtyp.txt openbabel-2.2.3/data/bin2hex.pl openbabel-2.2.3/data/bondtyp.h openbabel-2.2.3/data/bondtyp.txt openbabel-2.2.3/data/CMakeLists.txt openbabel-2.2.3/data/element.h openbabel-2.2.3/data/element.txt openbabel-2.2.3/data/fragments.txt openbabel-2.2.3/data/ghemical.prm openbabel-2.2.3/data/isotope-small.txt openbabel-2.2.3/data/isotope.h openbabel-2.2.3/data/isotope.txt openbabel-2.2.3/data/logp.txt openbabel-2.2.3/data/MACCS.txt openbabel-2.2.3/data/Makefile.am openbabel-2.2.3/data/Makefile.in openbabel-2.2.3/data/mmff94.ff openbabel-2.2.3/data/mmff94s.ff openbabel-2.2.3/data/mmffang.par openbabel-2.2.3/data/mmffbndk.par openbabel-2.2.3/data/mmffbond.par openbabel-2.2.3/data/mmffchg.par openbabel-2.2.3/data/mmffdef.par openbabel-2.2.3/data/mmffdfsb.par openbabel-2.2.3/data/mmffoop.par openbabel-2.2.3/data/mmffpbci.par openbabel-2.2.3/data/mmffprop.par openbabel-2.2.3/data/mmffs_oop.par openbabel-2.2.3/data/mmffs_tor.par openbabel-2.2.3/data/mmffstbn.par openbabel-2.2.3/data/mmfftor.par openbabel-2.2.3/data/mmffvdw.par openbabel-2.2.3/data/mr.txt openbabel-2.2.3/data/patterns.txt openbabel-2.2.3/data/phmodel.txt openbabel-2.2.3/data/phmodeldata.h openbabel-2.2.3/data/plugindefines.txt openbabel-2.2.3/data/psa.txt openbabel-2.2.3/data/resdata.h openbabel-2.2.3/data/resdata.txt openbabel-2.2.3/data/ringtyp.txt openbabel-2.2.3/data/SMARTS_InteLigand.txt openbabel-2.2.3/data/space-groups.txt openbabel-2.2.3/data/torlib.h openbabel-2.2.3/data/torlib.txt openbabel-2.2.3/data/types.h openbabel-2.2.3/data/types.txt openbabel-2.2.3/data/UFF.prm openbabel-2.2.3/depcomp openbabel-2.2.3/doc/ openbabel-2.2.3/doc/babel.1 openbabel-2.2.3/doc/babel.html openbabel-2.2.3/doc/babel31.inc openbabel-2.2.3/doc/CMakeLists.txt openbabel-2.2.3/doc/dioxin.inc openbabel-2.2.3/doc/dioxin.mol2 openbabel-2.2.3/doc/dioxin.png openbabel-2.2.3/doc/dioxin.pov openbabel-2.2.3/doc/FAQ.html openbabel-2.2.3/doc/Makefile.am openbabel-2.2.3/doc/Makefile.in openbabel-2.2.3/doc/obchiral.1 openbabel-2.2.3/doc/obchiral.html openbabel-2.2.3/doc/obconformer.1 openbabel-2.2.3/doc/obconformer.html openbabel-2.2.3/doc/obenergy.1 openbabel-2.2.3/doc/obenergy.html openbabel-2.2.3/doc/obfit.1 openbabel-2.2.3/doc/obfit.html openbabel-2.2.3/doc/obgen.1 openbabel-2.2.3/doc/obgen.html openbabel-2.2.3/doc/obgrep.1 openbabel-2.2.3/doc/obgrep.html openbabel-2.2.3/doc/obminimize.1 openbabel-2.2.3/doc/obminimize.html openbabel-2.2.3/doc/obprobe.1 openbabel-2.2.3/doc/obprobe.html openbabel-2.2.3/doc/obprop.1 openbabel-2.2.3/doc/obprop.html openbabel-2.2.3/doc/obrotamer.1 openbabel-2.2.3/doc/obrotamer.html openbabel-2.2.3/doc/obrotate.1 openbabel-2.2.3/doc/obrotate.html openbabel-2.2.3/doc/OBTwoMigration.html openbabel-2.2.3/doc/README.dioxin.pov openbabel-2.2.3/doc/README.povray openbabel-2.2.3/doc/roundtrip.1 openbabel-2.2.3/Doxyfile openbabel-2.2.3/include/ openbabel-2.2.3/include/chemdrawcdx.h openbabel-2.2.3/include/CMakeLists.txt openbabel-2.2.3/include/inchi102/ openbabel-2.2.3/include/inchi102/aux2atom.h openbabel-2.2.3/include/inchi102/extr_ct.h openbabel-2.2.3/include/inchi102/ichi.h openbabel-2.2.3/include/inchi102/ichi_bns.h openbabel-2.2.3/include/inchi102/ichi_io.h openbabel-2.2.3/include/inchi102/ichicano.h openbabel-2.2.3/include/inchi102/ichicant.h openbabel-2.2.3/include/inchi102/ichicomn.h openbabel-2.2.3/include/inchi102/ichicomp.h openbabel-2.2.3/include/inchi102/ichidrp.h openbabel-2.2.3/include/inchi102/ichierr.h openbabel-2.2.3/include/inchi102/ichimain.h openbabel-2.2.3/include/inchi102/ichimake.h openbabel-2.2.3/include/inchi102/ichinorm.h openbabel-2.2.3/include/inchi102/ichiparm.h openbabel-2.2.3/include/inchi102/ichiring.h openbabel-2.2.3/include/inchi102/ichirvrs.h openbabel-2.2.3/include/inchi102/ichisize.h openbabel-2.2.3/include/inchi102/ichister.h openbabel-2.2.3/include/inchi102/ichitaut.h openbabel-2.2.3/include/inchi102/ichitime.h openbabel-2.2.3/include/inchi102/ikey_base26.h openbabel-2.2.3/include/inchi102/inchi_api.h openbabel-2.2.3/include/inchi102/inchi_dll_a.h openbabel-2.2.3/include/inchi102/inchi_dll_main.h openbabel-2.2.3/include/inchi102/inchicmp.h openbabel-2.2.3/include/inchi102/incomdef.h openbabel-2.2.3/include/inchi102/inpdef.h openbabel-2.2.3/include/inchi102/lreadmol.h openbabel-2.2.3/include/inchi102/mode.h openbabel-2.2.3/include/inchi102/sha2.h openbabel-2.2.3/include/inchi102/strutil.h openbabel-2.2.3/include/inchi102/util.h openbabel-2.2.3/include/inchi_api.h openbabel-2.2.3/include/Makefile.am openbabel-2.2.3/include/Makefile.in openbabel-2.2.3/include/OB-BGL/ openbabel-2.2.3/include/OB-BGL/example.cpp openbabel-2.2.3/include/OB-BGL/mol_graph.h openbabel-2.2.3/include/OB-BGL/verbose_visitors.h openbabel-2.2.3/include/openbabel/ openbabel-2.2.3/include/openbabel/alias.h openbabel-2.2.3/include/openbabel/atom.h openbabel-2.2.3/include/openbabel/atomclass.h openbabel-2.2.3/include/openbabel/base.h openbabel-2.2.3/include/openbabel/bitvec.h openbabel-2.2.3/include/openbabel/bond.h openbabel-2.2.3/include/openbabel/bondtyper.h openbabel-2.2.3/include/openbabel/builder.h openbabel-2.2.3/include/openbabel/canon.h openbabel-2.2.3/include/openbabel/chains.h openbabel-2.2.3/include/openbabel/chiral.h openbabel-2.2.3/include/openbabel/data.h openbabel-2.2.3/include/openbabel/descriptor.h openbabel-2.2.3/include/openbabel/dlhandler.h openbabel-2.2.3/include/openbabel/fingerprint.h openbabel-2.2.3/include/openbabel/forcefield.h openbabel-2.2.3/include/openbabel/format.h openbabel-2.2.3/include/openbabel/generic.h openbabel-2.2.3/include/openbabel/grid.h openbabel-2.2.3/include/openbabel/griddata.h openbabel-2.2.3/include/openbabel/groupcontrib.h openbabel-2.2.3/include/openbabel/internalcoord.h openbabel-2.2.3/include/openbabel/kinetics.h openbabel-2.2.3/include/openbabel/lineend.h openbabel-2.2.3/include/openbabel/locale.h openbabel-2.2.3/include/openbabel/Makefile.am openbabel-2.2.3/include/openbabel/Makefile.in openbabel-2.2.3/include/openbabel/math/ openbabel-2.2.3/include/openbabel/math/Makefile.am openbabel-2.2.3/include/openbabel/math/Makefile.in openbabel-2.2.3/include/openbabel/math/matrix3x3.h openbabel-2.2.3/include/openbabel/math/spacegroup.h openbabel-2.2.3/include/openbabel/math/transform3d.h openbabel-2.2.3/include/openbabel/math/vector3.h openbabel-2.2.3/include/openbabel/matrix.h openbabel-2.2.3/include/openbabel/mol.h openbabel-2.2.3/include/openbabel/molchrg.h openbabel-2.2.3/include/openbabel/obconversion.h openbabel-2.2.3/include/openbabel/oberror.h openbabel-2.2.3/include/openbabel/obiter.h openbabel-2.2.3/include/openbabel/obmolecformat.h openbabel-2.2.3/include/openbabel/obutil.h openbabel-2.2.3/include/openbabel/op.h openbabel-2.2.3/include/openbabel/optransform.h openbabel-2.2.3/include/openbabel/parsmart.h openbabel-2.2.3/include/openbabel/patty.h openbabel-2.2.3/include/openbabel/phmodel.h openbabel-2.2.3/include/openbabel/plugin.h openbabel-2.2.3/include/openbabel/pointgroup.h openbabel-2.2.3/include/openbabel/rand.h openbabel-2.2.3/include/openbabel/reaction.h openbabel-2.2.3/include/openbabel/residue.h openbabel-2.2.3/include/openbabel/ring.h openbabel-2.2.3/include/openbabel/rotamer.h openbabel-2.2.3/include/openbabel/rotor.h openbabel-2.2.3/include/openbabel/tokenst.h openbabel-2.2.3/include/openbabel/typer.h openbabel-2.2.3/include/openbabel/xml.h openbabel-2.2.3/include/RDKitConv.h openbabel-2.2.3/INSTALL openbabel-2.2.3/install-sh openbabel-2.2.3/ltmain.sh openbabel-2.2.3/Makefile.am openbabel-2.2.3/Makefile.in openbabel-2.2.3/missing openbabel-2.2.3/mkinstalldirs openbabel-2.2.3/NEWS openbabel-2.2.3/openbabel-2.0.pc.cmake openbabel-2.2.3/openbabel-2.0.pc.in openbabel-2.2.3/README openbabel-2.2.3/scripts/ openbabel-2.2.3/scripts/csharp/ openbabel-2.2.3/scripts/csharp/example.cs openbabel-2.2.3/scripts/csharp/example.py openbabel-2.2.3/scripts/csharp/OBDotNet.dll openbabel-2.2.3/scripts/csharp/openbabel_csharp.cpp openbabel-2.2.3/scripts/csharp/README openbabel-2.2.3/scripts/java/ openbabel-2.2.3/scripts/java/OBTest.java openbabel-2.2.3/scripts/java/openbabel.jar openbabel-2.2.3/scripts/java/openbabel_java.cpp openbabel-2.2.3/scripts/java/README openbabel-2.2.3/scripts/Makefile.am openbabel-2.2.3/scripts/Makefile.in openbabel-2.2.3/scripts/openbabel-java.i openbabel-2.2.3/scripts/openbabel-mono.i openbabel-2.2.3/scripts/openbabel-perl.i openbabel-2.2.3/scripts/openbabel-python.i openbabel-2.2.3/scripts/openbabel-ruby.i openbabel-2.2.3/scripts/perl/ openbabel-2.2.3/scripts/perl/Changes openbabel-2.2.3/scripts/perl/COPYING openbabel-2.2.3/scripts/perl/examples/ openbabel-2.2.3/scripts/perl/examples/example.pl openbabel-2.2.3/scripts/perl/inc/ openbabel-2.2.3/scripts/perl/inc/Devel/ openbabel-2.2.3/scripts/perl/inc/Devel/CheckLib.pm openbabel-2.2.3/scripts/perl/Makefile.PL openbabel-2.2.3/scripts/perl/MANIFEST openbabel-2.2.3/scripts/perl/META.yml openbabel-2.2.3/scripts/perl/OpenBabel.pm openbabel-2.2.3/scripts/perl/openbabel_perl.cpp openbabel-2.2.3/scripts/perl/README openbabel-2.2.3/scripts/perl/t/ openbabel-2.2.3/scripts/perl/t/atom.t openbabel-2.2.3/scripts/perl/t/bond.t openbabel-2.2.3/scripts/perl/t/conversion.t openbabel-2.2.3/scripts/perl/t/data.t openbabel-2.2.3/scripts/perl/t/format.t openbabel-2.2.3/scripts/perl/t/internalcoord.t openbabel-2.2.3/scripts/perl/t/mol.t openbabel-2.2.3/scripts/perl/t/residue.t openbabel-2.2.3/scripts/python/ openbabel-2.2.3/scripts/python/examples/ openbabel-2.2.3/scripts/python/examples/energy.py openbabel-2.2.3/scripts/python/examples/examples.py openbabel-2.2.3/scripts/python/examples/findcoverage.bat openbabel-2.2.3/scripts/python/examples/hashizume.cif openbabel-2.2.3/scripts/python/examples/head.sdf openbabel-2.2.3/scripts/python/examples/minSimple.py openbabel-2.2.3/scripts/python/examples/testpybel.py openbabel-2.2.3/scripts/python/examples/wgtRotorSrch.py 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openbabel-2.2.3/tools/README openbabel-2.2.3/windows-vc2005/ openbabel-2.2.3/windows-vc2005/Add2D/ openbabel-2.2.3/windows-vc2005/Add2D/Add2D.vcproj openbabel-2.2.3/windows-vc2005/babelconfig.h openbabel-2.2.3/windows-vc2005/Distribution/ openbabel-2.2.3/windows-vc2005/Distribution/CheckInstallerScript.py openbabel-2.2.3/windows-vc2005/Distribution/ExampleFiles/ openbabel-2.2.3/windows-vc2005/Distribution/ExampleFiles/150mols.smi openbabel-2.2.3/windows-vc2005/Distribution/ExampleFiles/FourSmallMols.cml openbabel-2.2.3/windows-vc2005/Distribution/ExampleFiles/oxamide.cml openbabel-2.2.3/windows-vc2005/Distribution/ExampleFiles/serotonin.mol openbabel-2.2.3/windows-vc2005/Distribution/logo_big.bmp openbabel-2.2.3/windows-vc2005/Distribution/logo_small.bmp openbabel-2.2.3/windows-vc2005/Distribution/NSISScriptToCreateInstallerOBF.nsi openbabel-2.2.3/windows-vc2005/Distribution/ToolsPrograms.txt openbabel-2.2.3/windows-vc2005/examples/ openbabel-2.2.3/windows-vc2005/examples/benzene.sdf openbabel-2.2.3/windows-vc2005/examples/example1.cpp openbabel-2.2.3/windows-vc2005/examples/example1.vcproj openbabel-2.2.3/windows-vc2005/gen3D/ openbabel-2.2.3/windows-vc2005/gen3D/gen3D.vcproj openbabel-2.2.3/windows-vc2005/iconv.dll openbabel-2.2.3/windows-vc2005/libstdinchi.dll openbabel-2.2.3/windows-vc2005/libstdinchi.lib openbabel-2.2.3/windows-vc2005/libxml2.dll openbabel-2.2.3/windows-vc2005/libxml2.lib openbabel-2.2.3/windows-vc2005/OBComLn/ openbabel-2.2.3/windows-vc2005/OBComLn/OBComLn.vcproj openbabel-2.2.3/windows-vc2005/OBCommonFormats/ openbabel-2.2.3/windows-vc2005/OBCommonFormats/OBCommonFormats.vcproj openbabel-2.2.3/windows-vc2005/OBConsole/ openbabel-2.2.3/windows-vc2005/OBConsole/OBConsole.vcproj openbabel-2.2.3/windows-vc2005/OBConv/ openbabel-2.2.3/windows-vc2005/OBConv/OBConv.vcproj openbabel-2.2.3/windows-vc2005/OBCSharp/ openbabel-2.2.3/windows-vc2005/OBCSharp/DotBabel/ openbabel-2.2.3/windows-vc2005/OBCSharp/DotBabel/AtomExtensions.cs openbabel-2.2.3/windows-vc2005/OBCSharp/DotBabel/DotBabel.csproj openbabel-2.2.3/windows-vc2005/OBCSharp/DotBabel/DotBabel.csproj.user openbabel-2.2.3/windows-vc2005/OBCSharp/DotBabel/MathExtensions.cs openbabel-2.2.3/windows-vc2005/OBCSharp/DotBabel/OBConvert.cs openbabel-2.2.3/windows-vc2005/OBCSharp/DotBabel/OBDescriptor.cs openbabel-2.2.3/windows-vc2005/OBCSharp/DotBabel/OBMolExtensions.cs openbabel-2.2.3/windows-vc2005/OBCSharp/DotBabel/OBReader.cs openbabel-2.2.3/windows-vc2005/OBCSharp/DotBabel/OBWriter.cs openbabel-2.2.3/windows-vc2005/OBCSharp/DotBabel/Properties/ openbabel-2.2.3/windows-vc2005/OBCSharp/DotBabel/Properties/AssemblyInfo.cs openbabel-2.2.3/windows-vc2005/OBCSharp/DotBabel/Smiles.cs openbabel-2.2.3/windows-vc2005/OBCSharp/DotBabel/Tools.cs openbabel-2.2.3/windows-vc2005/OBCSharp/DotBabel/Transform.cs openbabel-2.2.3/windows-vc2005/OBCSharp/IronPython_Instructions.txt openbabel-2.2.3/windows-vc2005/OBCSharp/OBCSharp.vcproj openbabel-2.2.3/windows-vc2005/OBCSharp/OBCSharpBindings.sln openbabel-2.2.3/windows-vc2005/OBCSharp/OBCSharpBindings.suo openbabel-2.2.3/windows-vc2005/OBCSharp/OBDotNet/ openbabel-2.2.3/windows-vc2005/OBCSharp/OBDotNet/bin/ openbabel-2.2.3/windows-vc2005/OBCSharp/OBDotNet/bin/Release/ openbabel-2.2.3/windows-vc2005/OBCSharp/OBDotNet/OBDotNet.csproj openbabel-2.2.3/windows-vc2005/OBCSharp/OBDotNet/OBDotNet.csproj.user openbabel-2.2.3/windows-vc2005/OBCSharp/OBDotNet/Properties/ openbabel-2.2.3/windows-vc2005/OBCSharp/OBDotNet/Properties/obdotnet.snk openbabel-2.2.3/windows-vc2005/OBCSharp/OBDotNet/Properties/OBDotNetAssemblyInfo.cs openbabel-2.2.3/windows-vc2005/OBCSharp/obdotnet.bat openbabel-2.2.3/windows-vc2005/OBCSharp/obdotnet.snk openbabel-2.2.3/windows-vc2005/OBCSharp/OBDotNetAssemblyInfo.txt openbabel-2.2.3/windows-vc2005/OBDESC/ openbabel-2.2.3/windows-vc2005/OBDESC/OBDESC.vcproj openbabel-2.2.3/windows-vc2005/OBDLL/ openbabel-2.2.3/windows-vc2005/OBDLL/OBDLL.vcproj openbabel-2.2.3/windows-vc2005/OBError/ openbabel-2.2.3/windows-vc2005/OBError/OBError.vcproj openbabel-2.2.3/windows-vc2005/OBFPRT/ openbabel-2.2.3/windows-vc2005/OBFPRT/OBFPRT.vcproj openbabel-2.2.3/windows-vc2005/OBFS/ openbabel-2.2.3/windows-vc2005/OBFS/OBFS.vcproj openbabel-2.2.3/windows-vc2005/OBGUI/ openbabel-2.2.3/windows-vc2005/OBGUI/OBGUI.vcproj openbabel-2.2.3/windows-vc2005/OBGUI/OpenBabelGUI.html openbabel-2.2.3/windows-vc2005/OBGUI.exe.manifest openbabel-2.2.3/windows-vc2005/OBGUII/ openbabel-2.2.3/windows-vc2005/OBGUII/OBGUII.vcproj openbabel-2.2.3/windows-vc2005/OBGUII/OpenBabelGUI.html openbabel-2.2.3/windows-vc2005/OBInchi/ openbabel-2.2.3/windows-vc2005/OBInchi/OBInchi.vcproj openbabel-2.2.3/windows-vc2005/OBJava/ openbabel-2.2.3/windows-vc2005/OBJava/objava.bat openbabel-2.2.3/windows-vc2005/OBJava/OBJava.vcproj openbabel-2.2.3/windows-vc2005/OBJava/org/ openbabel-2.2.3/windows-vc2005/OBJava/org/openbabel/ openbabel-2.2.3/windows-vc2005/OBMCDL/ openbabel-2.2.3/windows-vc2005/OBMCDL/MCDL.vcproj openbabel-2.2.3/windows-vc2005/OBMoreFormats/ openbabel-2.2.3/windows-vc2005/OBMoreFormats/OBMoreFormats.vcproj openbabel-2.2.3/windows-vc2005/OBPythonOBF/ openbabel-2.2.3/windows-vc2005/OBPythonOBF/logo.bmp openbabel-2.2.3/windows-vc2005/OBPythonOBF/obpython.bat openbabel-2.2.3/windows-vc2005/OBPythonOBF/OBPythonOBF.vcproj openbabel-2.2.3/windows-vc2005/OBPythonOBF/Readme.txt openbabel-2.2.3/windows-vc2005/OBPythonOBF/setup.py openbabel-2.2.3/windows-vc2005/OBTools/ openbabel-2.2.3/windows-vc2005/OBTools/nbabel.vcproj openbabel-2.2.3/windows-vc2005/OBTools/obchiral.vcproj openbabel-2.2.3/windows-vc2005/OBTools/obconformer.vcproj openbabel-2.2.3/windows-vc2005/OBTools/obenergy.vcproj openbabel-2.2.3/windows-vc2005/OBTools/obfit.vcproj openbabel-2.2.3/windows-vc2005/OBTools/obminimize.vcproj openbabel-2.2.3/windows-vc2005/OBTools/obmm.vcproj openbabel-2.2.3/windows-vc2005/OBTools/obprobe.vcproj openbabel-2.2.3/windows-vc2005/OBTools/obprop.vcproj openbabel-2.2.3/windows-vc2005/OBTools/obrotamer.vcproj openbabel-2.2.3/windows-vc2005/OBTools/obrotate.vcproj openbabel-2.2.3/windows-vc2005/OBTools/obseq.vcproj openbabel-2.2.3/windows-vc2005/OBTools/obsym.vcproj openbabel-2.2.3/windows-vc2005/OBTools/Projects in OBTools.txt openbabel-2.2.3/windows-vc2005/OBTools.sln openbabel-2.2.3/windows-vc2005/OBUtilFormats/ openbabel-2.2.3/windows-vc2005/OBUtilFormats/OBUtilFormats.vcproj openbabel-2.2.3/windows-vc2005/OBXMLFormats/ openbabel-2.2.3/windows-vc2005/OBXMLFormats/OBXMLFormats.vcproj openbabel-2.2.3/windows-vc2005/OpenBabelDLL/ openbabel-2.2.3/windows-vc2005/OpenBabelDLL/OpenBabelDLL.vcproj openbabel-2.2.3/windows-vc2005/OpenBabelOBF.sln openbabel-2.2.3/windows-vc2005/Projects in this workspace.txt openbabel-2.2.3/windows-vc2005/setenv.txt openbabel-2.2.3/windows-vc2005/template/ openbabel-2.2.3/windows-vc2005/template/template.cpp openbabel-2.2.3/windows-vc2005/template/template.vcproj openbabel-2.2.3/windows-vc2005/zdll.lib openbabel-2.2.3/windows-vc2005/zlib1.dll openbabel-2.2.3/windows-vc2005/zlib1.lib sudo -u fink-bld [ENV] sh -c /tmp/fink.9iEmb OPENBABEL_INSTALL=/sw /sw/bin/python2.7 setup.py build INFO: Using the value of $OPENBABEL_INSTALL (/sw) running build running build_py creating build creating build/lib.macosx-10.9-x86_64-2.7 copying openbabel.py -> build/lib.macosx-10.9-x86_64-2.7 copying pybel.py -> build/lib.macosx-10.9-x86_64-2.7 running build_ext building '_openbabel' extension creating build/temp.macosx-10.9-x86_64-2.7 gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -I/sw/include/openbabel-2.0 -I/sw/include/python2.7 -c openbabel_python.cpp -o build/temp.macosx-10.9-x86_64-2.7/openbabel_python.o openbabel_python.cpp:2228:11: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign] res = SWIG_AddCast(res); ~~~ ^ ~~~ openbabel_python.cpp:2231:11: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign] res = SWIG_AddCast(res); ~~~ ^ ~~~ In file included from openbabel_python.cpp:3005: In file included from /sw/include/openbabel-2.0/openbabel/forcefield.h:32: /sw/include/openbabel-2.0/openbabel/grid.h:123:10: warning: 'OpenBabel::OBFloatGrid::Init' hides overloaded virtual function [-Woverloaded-virtual] void Init(OBMol &box,double spacing, double pad=0.0); ^ /sw/include/openbabel-2.0/openbabel/grid.h:55:18: note: hidden overloaded virtual function 'OpenBabel::OBGrid::Init' declared here: different number of parameters (1 vs 3) virtual void Init(OBMol &box); ^ In file included from openbabel_python.cpp:3005: In file included from /sw/include/openbabel-2.0/openbabel/forcefield.h:33: /sw/include/openbabel-2.0/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] double GetValue(int i, int j, int k) const; ^ /sw/include/openbabel-2.0/openbabel/base.h:206:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) virtual const std::string &GetValue() const ^ In file included from openbabel_python.cpp:3005: In file included from /sw/include/openbabel-2.0/openbabel/forcefield.h:33: /sw/include/openbabel-2.0/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] double GetValue (vector3 pos) const; ^ /sw/include/openbabel-2.0/openbabel/base.h:206:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) virtual const std::string &GetValue() const ^ openbabel_python.cpp:42725:14: warning: explicitly assigning a variable of type 'void *' to itself [-Wself-assign] clientdata = clientdata; ~~~~~~~~~~ ^ ~~~~~~~~~~ openbabel_python.cpp:3589:9: warning: destination for this 'memset' call is a pointer to dynamic class 'OpenBabel::OBMol'; vtable pointer will be overwritten [-Wdynamic-class-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~ ^ openbabel_python.cpp:3614:62: note: in instantiation of member function 'swig::traits_as::as' requested here return traits_as::category>::as(obj, te); ^ openbabel_python.cpp:4053:15: note: in instantiation of function template specialization 'swig::as' requested here return swig::as(item, true); ^ openbabel_python.cpp:4333:42: note: in instantiation of member function 'swig::SwigPySequence_Ref::operator OBMol' requested here seq->insert(seq->end(),(value_type)(*it)); ^ openbabel_python.cpp:4355:6: note: in instantiation of function template specialization 'swig::assign, std::__1::vector > >' requested here assign(swigpyseq, pseq); ^ openbabel_python.cpp:4410:47: note: in instantiation of member function 'swig::traits_asptr_stdseq >, OpenBabel::OBMol>::asptr' requested here return traits_asptr_stdseq >::asptr(obj, vec); ^ openbabel_python.cpp:3506:32: note: in instantiation of member function 'swig::traits_asptr > >::asptr' requested here return traits_asptr::asptr(obj, vptr); ^ openbabel_python.cpp:7821:18: note: in instantiation of function template specialization 'swig::asptr > >' requested here res4 = swig::asptr(swig_obj[3], &ptr); if (!SWIG_IsOK(res4)) { ^ openbabel_python.cpp:3589:9: note: explicitly cast the pointer to silence this warning memset(v_def,0,sizeof(Type)); ^ (void*) openbabel_python.cpp:3589:9: warning: destination for this 'memset' call is a pointer to dynamic class 'OpenBabel::OBBond'; vtable pointer will be overwritten [-Wdynamic-class-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~ ^ openbabel_python.cpp:3614:62: note: in instantiation of member function 'swig::traits_as::as' requested here return traits_as::category>::as(obj, te); ^ openbabel_python.cpp:4053:15: note: in instantiation of function template specialization 'swig::as' requested here return swig::as(item, true); ^ openbabel_python.cpp:4333:42: note: in instantiation of member function 'swig::SwigPySequence_Ref::operator OBBond' requested here seq->insert(seq->end(),(value_type)(*it)); ^ openbabel_python.cpp:4355:6: note: in instantiation of function template specialization 'swig::assign, std::__1::vector > >' requested here assign(swigpyseq, pseq); ^ openbabel_python.cpp:4410:47: note: in instantiation of member function 'swig::traits_asptr_stdseq >, OpenBabel::OBBond>::asptr' requested here return traits_asptr_stdseq >::asptr(obj, vec); ^ openbabel_python.cpp:3506:32: note: in instantiation of member function 'swig::traits_asptr > >::asptr' requested here return traits_asptr::asptr(obj, vptr); ^ openbabel_python.cpp:8112:18: note: in instantiation of function template specialization 'swig::asptr > >' requested here res4 = swig::asptr(swig_obj[3], &ptr); if (!SWIG_IsOK(res4)) { ^ openbabel_python.cpp:3589:9: note: explicitly cast the pointer to silence this warning memset(v_def,0,sizeof(Type)); ^ (void*) openbabel_python.cpp:3589:9: warning: destination for this 'memset' call is a pointer to dynamic class 'OpenBabel::OBResidue'; vtable pointer will be overwritten [-Wdynamic-class-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~ ^ openbabel_python.cpp:3614:62: note: in instantiation of member function 'swig::traits_as::as' requested here return traits_as::category>::as(obj, te); ^ openbabel_python.cpp:4053:15: note: in instantiation of function template specialization 'swig::as' requested here return swig::as(item, true); ^ openbabel_python.cpp:4333:42: note: in instantiation of member function 'swig::SwigPySequence_Ref::operator OBResidue' requested here seq->insert(seq->end(),(value_type)(*it)); ^ openbabel_python.cpp:4355:6: note: in instantiation of function template specialization 'swig::assign, std::__1::vector > >' requested here assign(swigpyseq, pseq); ^ openbabel_python.cpp:4410:47: note: in instantiation of member function 'swig::traits_asptr_stdseq >, OpenBabel::OBResidue>::asptr' requested here return traits_asptr_stdseq >::asptr(obj, vec); ^ openbabel_python.cpp:3506:32: note: in instantiation of member function 'swig::traits_asptr > >::asptr' requested here return traits_asptr::asptr(obj, vptr); ^ openbabel_python.cpp:8404:18: note: in instantiation of function template specialization 'swig::asptr > >' requested here res4 = swig::asptr(swig_obj[3], &ptr); if (!SWIG_IsOK(res4)) { ^ openbabel_python.cpp:3589:9: note: explicitly cast the pointer to silence this warning memset(v_def,0,sizeof(Type)); ^ (void*) 9 warnings generated. g++ -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib -L/sw/lib -I/sw/include build/temp.macosx-10.9-x86_64-2.7/openbabel_python.o -L/sw/lib -L/sw/lib -lopenbabel -o build/lib.macosx-10.9-x86_64-2.7/_openbabel.so /bin/rm -rf /sw/build.build/root-openbabel-py27-2.2.3-11 /bin/mkdir -p /sw/build.build/root-openbabel-py27-2.2.3-11/sw /bin/mkdir -p /sw/build.build/root-openbabel-py27-2.2.3-11/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-openbabel-py27-2.2.3-11 sudo -u fink-bld [ENV] sh -c /tmp/fink.A4CAV OPENBABEL_INSTALL=/sw /sw/bin/python2.7 setup.py install --root=/sw/build.build/root-openbabel-py27-2.2.3-11 INFO: Using the value of $OPENBABEL_INSTALL (/sw) running install running build running build_py copying pybel.py -> build/lib.macosx-10.9-x86_64-2.7 running build_ext running install_lib creating /sw/build.build/root-openbabel-py27-2.2.3-11/sw/lib creating /sw/build.build/root-openbabel-py27-2.2.3-11/sw/lib/python2.7 creating /sw/build.build/root-openbabel-py27-2.2.3-11/sw/lib/python2.7/site-packages copying build/lib.macosx-10.9-x86_64-2.7/_openbabel.so -> /sw/build.build/root-openbabel-py27-2.2.3-11/sw/lib/python2.7/site-packages copying build/lib.macosx-10.9-x86_64-2.7/openbabel.py -> /sw/build.build/root-openbabel-py27-2.2.3-11/sw/lib/python2.7/site-packages copying build/lib.macosx-10.9-x86_64-2.7/pybel.py -> /sw/build.build/root-openbabel-py27-2.2.3-11/sw/lib/python2.7/site-packages byte-compiling /sw/build.build/root-openbabel-py27-2.2.3-11/sw/lib/python2.7/site-packages/openbabel.py to openbabel.pyc byte-compiling /sw/build.build/root-openbabel-py27-2.2.3-11/sw/lib/python2.7/site-packages/pybel.py to pybel.pyc running install_egg_info Writing /sw/build.build/root-openbabel-py27-2.2.3-11/sw/lib/python2.7/site-packages/openbabel-1.5-py2.7.egg-info sudo -u fink-bld [ENV] sh -c /tmp/fink.LCpgo /usr/bin/install -d -m 700 /sw/build.build/root-openbabel-py27-2.2.3-11/sw/share/doc/openbabel-py27 /bin/cp -r README /sw/build.build/root-openbabel-py27-2.2.3-11/sw/share/doc/openbabel-py27/ /bin/chmod -R go=u-w /sw/build.build/root-openbabel-py27-2.2.3-11/sw/share/doc/openbabel-py27 /bin/rm -f /sw/build.build/root-openbabel-py27-2.2.3-11/sw/info/dir /sw/build.build/root-openbabel-py27-2.2.3-11/sw/info/dir.old /sw/build.build/root-openbabel-py27-2.2.3-11/sw/share/info/dir /sw/build.build/root-openbabel-py27-2.2.3-11/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-openbabel-py27-2.2.3-11 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `openbabel-py27' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/openbabel-py27_2.2.3-11_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-openbabel-py27-2.2.3-11 (Reading database ... 15382 files and directories currently installed.) Removing fink-buildlock-openbabel-py27-2.2.3-11 ...