printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild phylip 2>&1 WARNING: your info file index has not been updated for 22 days. You should run 'fink selfupdate' to get the latest package descriptions. The package 'phylip' will be built without being installed. Reading build dependency for phylip-3.69.5-2... Reading dependency for phylip-3.69.5-2... Reading build conflict for phylip-3.69.5-2... The following package will be rebuilt: phylip Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-phylip-3.69.5-2 /sw/build.build dpkg-deb: building package `fink-buildlock-phylip-3.69.5-2' in `/sw/build.build/fink-buildlock-phylip-3.69.5-2_2014.08.16-08.18.11_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-phylip-3.69.5-2_2014.08.16-08.18.11_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-phylip-3.69.5-2. (Reading database ... 4405 files and directories currently installed.) Unpacking fink-buildlock-phylip-3.69.5-2 (from .../fink-buildlock-phylip-3.69.5-2_2014.08.16-08.18.11_darwin-x86_64.deb) ... Setting up fink-buildlock-phylip-3.69.5-2 (2014.08.16-08.18.11) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.bF9tf env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/phylip-3.695.tar.gz phylip-3.695/ phylip-3.695/exe/ phylip-3.695/phylip.html phylip-3.695/doc/ phylip-3.695/doc/protpars.html phylip-3.695/doc/images/ phylip-3.695/doc/images/DrawGramCat.png phylip-3.695/doc/images/DrawGramControls.png phylip-3.695/doc/images/InputTree.png phylip-3.695/doc/images/DrawTreeCat.png phylip-3.695/doc/images/DrawTreeControls.png phylip-3.695/doc/pars.html phylip-3.695/doc/phylip.gif phylip-3.695/doc/sequence.html phylip-3.695/doc/retree.html phylip-3.695/doc/move.html phylip-3.695/doc/drawtree.html phylip-3.695/doc/main.html phylip-3.695/doc/restml.html phylip-3.695/doc/drawgram.html phylip-3.695/doc/dnadist.html phylip-3.695/doc/mix.html phylip-3.695/doc/contml.html phylip-3.695/doc/protdist.html phylip-3.695/doc/treedist.html phylip-3.695/doc/discrete.html phylip-3.695/doc/proml.html phylip-3.695/doc/gendist.html phylip-3.695/doc/penny.html phylip-3.695/doc/fitch.html phylip-3.695/doc/restdist.html phylip-3.695/doc/contchar.html phylip-3.695/doc/dnapars.html phylip-3.695/doc/factor.html phylip-3.695/doc/dnacomp.html phylip-3.695/doc/clique.html phylip-3.695/doc/dnamove.html phylip-3.695/doc/dollop.html phylip-3.695/doc/seqboot.html phylip-3.695/doc/dnaml.html phylip-3.695/doc/draw.html phylip-3.695/doc/contrast.html phylip-3.695/doc/neighbor.html phylip-3.695/doc/dolpenny.html phylip-3.695/doc/kitsch.html phylip-3.695/doc/promlk.html phylip-3.695/doc/consense.html phylip-3.695/doc/dolmove.html phylip-3.695/doc/dnainvar.html phylip-3.695/doc/dnapenny.html phylip-3.695/doc/distance.html phylip-3.695/doc/dnamlk.html phylip-3.695/src/ phylip-3.695/src/contrast.c phylip-3.695/src/Makefile.unx phylip-3.695/src/drawtree.c phylip-3.695/src/drawgram.c phylip-3.695/src/protdist.c phylip-3.695/src/consense.c phylip-3.695/src/dolpenny.c phylip-3.695/src/phylip.c phylip-3.695/src/dollo.c phylip-3.695/src/dnamove.c phylip-3.695/src/promlk.c phylip-3.695/src/draw.h phylip-3.695/src/fitch.c phylip-3.695/src/cons.h phylip-3.695/src/kitsch.c phylip-3.695/src/icons/ phylip-3.695/src/icons/restdist.rc phylip-3.695/src/icons/dollop.rcb phylip-3.695/src/icons/clique.rc phylip-3.695/src/icons/contrast.ico phylip-3.695/src/icons/dnapars.rc phylip-3.695/src/icons/restdist.rcb phylip-3.695/src/icons/seqboot.rc phylip-3.695/src/icons/dnapenny.rc phylip-3.695/src/icons/drawtree.rcb phylip-3.695/src/icons/drawgram.rc phylip-3.695/src/icons/protdist.rc phylip-3.695/src/icons/penny.rcb phylip-3.695/src/icons/factor.rcb phylip-3.695/src/icons/restml.rc phylip-3.695/src/icons/fitch.rcb phylip-3.695/src/icons/dolpenny.rcb phylip-3.695/src/icons/contml.ico phylip-3.695/src/icons/mix.rc phylip-3.695/src/icons/gendist.rc phylip-3.695/src/icons/drawgram.rcb phylip-3.695/src/icons/treedist.rc phylip-3.695/src/icons/penny.rc phylip-3.695/src/icons/dnaml.rc phylip-3.695/src/icons/contml.rcb phylip-3.695/src/icons/drawgram.ico phylip-3.695/src/icons/contrast.rc phylip-3.695/src/icons/dnamlk.rcb phylip-3.695/src/icons/kitsch.rc phylip-3.695/src/icons/fitch.rc phylip-3.695/src/icons/pars.rc phylip-3.695/src/icons/seqboot.rcb phylip-3.695/src/icons/pars.rcb phylip-3.695/src/icons/drawtree.ico phylip-3.695/src/icons/clique.ico phylip-3.695/src/icons/protdist.rcb phylip-3.695/src/icons/proml.rcb phylip-3.695/src/icons/consense.rc phylip-3.695/src/icons/consense.rcb phylip-3.695/src/icons/restml.rcb phylip-3.695/src/icons/protein.ico phylip-3.695/src/icons/treedist.rcb phylip-3.695/src/icons/dnapars.rcb phylip-3.695/src/icons/retree.rcb phylip-3.695/src/icons/dnaml.rcb phylip-3.695/src/icons/protpars.rc phylip-3.695/src/icons/disc.ico phylip-3.695/src/icons/contml.rc phylip-3.695/src/icons/clique.rcb phylip-3.695/src/icons/consense.ico phylip-3.695/src/icons/restrict.ico phylip-3.695/src/icons/factor.rc phylip-3.695/src/icons/retree.ico phylip-3.695/src/icons/kitsch.rcb phylip-3.695/src/icons/dollo.ico phylip-3.695/src/icons/dnadist.rcb phylip-3.695/src/icons/gendist.rcb phylip-3.695/src/icons/dnainvar.rc phylip-3.695/src/icons/retree.rc phylip-3.695/src/icons/dnacomp.rc phylip-3.695/src/icons/proml.rc phylip-3.695/src/icons/dnamove.rc phylip-3.695/src/icons/move.rc phylip-3.695/src/icons/promlk.rcb phylip-3.695/src/icons/dnamlk.rc phylip-3.695/src/icons/dolmove.rcb phylip-3.695/src/icons/move.rcb phylip-3.695/src/icons/neighbor.rcb phylip-3.695/src/icons/dnapenny.rcb phylip-3.695/src/icons/drawtree.rc phylip-3.695/src/icons/dolpenny.rc phylip-3.695/src/icons/gendist.ico phylip-3.695/src/icons/dnamove.rcb phylip-3.695/src/icons/dnainvar.rcb phylip-3.695/src/icons/boot.ico phylip-3.695/src/icons/dna.ico phylip-3.695/src/icons/dollop.rc phylip-3.695/src/icons/mix.rcb phylip-3.695/src/icons/dolmove.rc phylip-3.695/src/icons/dist.ico phylip-3.695/src/icons/treedist.ico phylip-3.695/src/icons/dnadist.rc phylip-3.695/src/icons/contrast.rcb phylip-3.695/src/icons/neighbor.rc phylip-3.695/src/icons/promlk.rc phylip-3.695/src/icons/dnacomp.rcb phylip-3.695/src/icons/protpars.rcb phylip-3.695/src/treedist.c phylip-3.695/src/mix.c phylip-3.695/src/font6 phylip-3.695/src/printree.c phylip-3.695/src/penny.c phylip-3.695/src/dolmove.c phylip-3.695/src/font3 phylip-3.695/src/Makefile.osx phylip-3.695/src/newmove.c phylip-3.695/src/clique.c phylip-3.695/src/disc.c phylip-3.695/src/COPYRIGHT phylip-3.695/src/io.h phylip-3.695/src/dist.h phylip-3.695/src/seq.h phylip-3.695/src/dollop.c phylip-3.695/src/mac/ phylip-3.695/src/mac/contml.icns phylip-3.695/src/mac/dnapars.icns phylip-3.695/src/mac/dnadist.icns phylip-3.695/src/mac/disc.icns phylip-3.695/src/mac/boot.icns phylip-3.695/src/mac/protein.icns phylip-3.695/src/mac/dolpenny.icns phylip-3.695/src/mac/dist.icns phylip-3.695/src/mac/proml.icns phylip-3.695/src/mac/fitch.icns phylip-3.695/src/mac/retree.icns phylip-3.695/src/mac/treedist.icns phylip-3.695/src/mac/dolmove.icns phylip-3.695/src/mac/penny.icns phylip-3.695/src/mac/drawgram.icns phylip-3.695/src/mac/dnainvar.icns phylip-3.695/src/mac/consense.icns phylip-3.695/src/mac/dnamlk.icns phylip-3.695/src/mac/contrast.icns phylip-3.695/src/mac/move.icns phylip-3.695/src/mac/dnapenny.icns phylip-3.695/src/mac/restml.icns phylip-3.695/src/mac/factor.icns phylip-3.695/src/mac/dnacomp.icns phylip-3.695/src/mac/dnaml.icns phylip-3.695/src/mac/dollop.icns phylip-3.695/src/mac/mix.icns phylip-3.695/src/mac/dnamove.icns phylip-3.695/src/mac/Info.plist.in phylip-3.695/src/mac/clique.icns phylip-3.695/src/mac/protpars.icns phylip-3.695/src/mac/seqboot.icns phylip-3.695/src/mac/pars.icns phylip-3.695/src/mac/neighbor.icns phylip-3.695/src/mac/gendist.icns phylip-3.695/src/mac/command.in phylip-3.695/src/mac/drawtree.icns phylip-3.695/src/mac/protdist.icns phylip-3.695/src/mac/kitsch.icns phylip-3.695/src/mac/restrict.icns phylip-3.695/src/mac/promlk.icns phylip-3.695/src/mac/dna.icns phylip-3.695/src/mac/dollo.icns phylip-3.695/src/mac/restdist.icns phylip-3.695/src/mac/mac.sit phylip-3.695/src/protpars.c phylip-3.695/src/dnainvar.c phylip-3.695/src/dollo.h phylip-3.695/src/seq.c phylip-3.695/src/gendist.c phylip-3.695/src/wagner.h phylip-3.695/src/interface.h phylip-3.695/src/wagner.c phylip-3.695/src/dnaml.c phylip-3.695/src/restml.c phylip-3.695/src/macface.h phylip-3.695/src/move.c phylip-3.695/src/javajars/ phylip-3.695/src/javajars/DrawTreeJava.exe phylip-3.695/src/javajars/DrawGramJava.exe phylip-3.695/src/javajars/DrawGramJava.bat phylip-3.695/src/javajars/DrawTree.jar phylip-3.695/src/javajars/DrawTreeJava.bat phylip-3.695/src/javajars/DrawTreeJava.unx phylip-3.695/src/javajars/DrawGram.jar phylip-3.695/src/javajars/DrawGramJava.unx phylip-3.695/src/neighbor.c phylip-3.695/src/moves.c phylip-3.695/src/restdist.c phylip-3.695/src/discrete.c phylip-3.695/src/cont.c phylip-3.695/src/retree.c phylip-3.695/src/dnapars.c phylip-3.695/src/cons.c phylip-3.695/src/font4 phylip-3.695/src/macface.c phylip-3.695/src/proml.c phylip-3.695/src/moves.h phylip-3.695/src/dist.c phylip-3.695/src/testdata/ phylip-3.695/src/testdata/dnainvar/ phylip-3.695/src/testdata/dnainvar/dnainvarinfile.txt phylip-3.695/src/testdata/dnainvar/dnainvaroutfile.txt phylip-3.695/src/testdata/mix/ phylip-3.695/src/testdata/mix/mixinfile.txt phylip-3.695/src/testdata/mix/mixouttree.txt phylip-3.695/src/testdata/mix/mixoutfile.txt phylip-3.695/src/testdata/drawgram/ phylip-3.695/src/testdata/drawgram/cats.txt phylip-3.695/src/testdata/drawgram/mammal.txt phylip-3.695/src/testdata/drawgram/14tip.txt phylip-3.695/src/testdata/drawgram/ape1.txt phylip-3.695/src/testdata/drawgram/ape2.txt phylip-3.695/src/testdata/factor/ phylip-3.695/src/testdata/factor/factorsfactfile.txt phylip-3.695/src/testdata/factor/factoroutfile.txt phylip-3.695/src/testdata/factor/factorinfile.txt phylip-3.695/src/testdata/factor/factorancfile.txt phylip-3.695/src/testdata/fitch/ phylip-3.695/src/testdata/fitch/fitchoutfile.txt phylip-3.695/src/testdata/fitch/fitchouttree.txt phylip-3.695/src/testdata/fitch/fitchinfile.txt phylip-3.695/src/testdata/proml/ phylip-3.695/src/testdata/proml/promlouttree.txt phylip-3.695/src/testdata/proml/promlcats.txt phylip-3.695/src/testdata/proml/promloutfile.txt phylip-3.695/src/testdata/proml/promlinfile.txt phylip-3.695/src/testdata/proml/promlweights.txt phylip-3.695/src/testdata/dnaml/ phylip-3.695/src/testdata/dnaml/dnamloutfile.txt phylip-3.695/src/testdata/dnaml/dnamlinfile.txt phylip-3.695/src/testdata/dnaml/dnamlouttree.txt phylip-3.695/src/testdata/dnaml/dnamlcats.txt phylip-3.695/src/testdata/dnaml/dnamlweights.txt phylip-3.695/src/testdata/dolmove/ phylip-3.695/src/testdata/dolmove/dolmoveinfile.txt phylip-3.695/src/testdata/dnapars/ phylip-3.695/src/testdata/dnapars/dnaparsouttree.txt phylip-3.695/src/testdata/dnapars/dnaparsoutfile.txt phylip-3.695/src/testdata/dnapars/dnaparsinfile.txt phylip-3.695/src/testdata/clique/ phylip-3.695/src/testdata/clique/cliqueoutfile.txt phylip-3.695/src/testdata/clique/cliqueinfile.txt phylip-3.695/src/testdata/clique/cliqueouttree.txt phylip-3.695/src/testdata/drawtree/ phylip-3.695/src/testdata/drawtree/cats.txt phylip-3.695/src/testdata/drawtree/mammal.txt phylip-3.695/src/testdata/drawtree/14tip.txt phylip-3.695/src/testdata/drawtree/ape1.txt phylip-3.695/src/testdata/drawtree/ape2.txt phylip-3.695/src/testdata/pars/ phylip-3.695/src/testdata/pars/parsoutfile.txt phylip-3.695/src/testdata/pars/parsinfile.txt phylip-3.695/src/testdata/pars/parsouttree.txt phylip-3.695/src/testdata/kitsch/ phylip-3.695/src/testdata/kitsch/kitschinfile.txt phylip-3.695/src/testdata/kitsch/kitschoutfile.txt phylip-3.695/src/testdata/kitsch/kitschouttree.txt phylip-3.695/src/testdata/dnapenny/ phylip-3.695/src/testdata/dnapenny/dnapennyinfile.txt phylip-3.695/src/testdata/dnapenny/dnapennyouttree.txt phylip-3.695/src/testdata/dnapenny/dnapennyoutfile.txt phylip-3.695/src/testdata/restml/ phylip-3.695/src/testdata/restml/restmloutfile.txt phylip-3.695/src/testdata/restml/restmlinfile.txt phylip-3.695/src/testdata/gendist/ phylip-3.695/src/testdata/gendist/gendistoutfile.txt phylip-3.695/src/testdata/gendist/gendistinfile.txt phylip-3.695/src/testdata/dolpenny/ phylip-3.695/src/testdata/dolpenny/dolpennyoutfile.txt phylip-3.695/src/testdata/dolpenny/dolpennyouttree.txt phylip-3.695/src/testdata/dolpenny/dolpennyinfile.txt phylip-3.695/src/testdata/move/ phylip-3.695/src/testdata/move/moveinfile.txt phylip-3.695/src/testdata/contrast/ phylip-3.695/src/testdata/contrast/contrastintree.txt phylip-3.695/src/testdata/contrast/contrastoutfile.txt phylip-3.695/src/testdata/contrast/contrastinfile.txt phylip-3.695/src/testdata/consense/ phylip-3.695/src/testdata/consense/consenseoutfile.txt phylip-3.695/src/testdata/consense/consenseintree.txt phylip-3.695/src/testdata/consense/consenseouttree.txt phylip-3.695/src/testdata/dnacomp/ phylip-3.695/src/testdata/dnacomp/dnacompouttree.txt phylip-3.695/src/testdata/dnacomp/dnacompinfile.txt phylip-3.695/src/testdata/dnacomp/dnacompoutfile.txt phylip-3.695/src/testdata/promlk/ phylip-3.695/src/testdata/promlk/promlkcats.txt phylip-3.695/src/testdata/promlk/promlkinfile.txt phylip-3.695/src/testdata/promlk/promlkoutfile.txt phylip-3.695/src/testdata/promlk/promlkweights.txt phylip-3.695/src/testdata/promlk/promlkouttree.txt phylip-3.695/src/testdata/dnamlk/ phylip-3.695/src/testdata/dnamlk/dnamlkinfile.txt phylip-3.695/src/testdata/dnamlk/dnamlkweights.txt phylip-3.695/src/testdata/dnamlk/dnamlkcats.txt phylip-3.695/src/testdata/dnamlk/dnamlkouttree.txt phylip-3.695/src/testdata/dnamlk/dnamlkoutfile.txt phylip-3.695/src/testdata/contml/ phylip-3.695/src/testdata/contml/contmloutfile.txt phylip-3.695/src/testdata/contml/contmlinfile.txt phylip-3.695/src/testdata/contml/contmlouttree.txt phylip-3.695/src/testdata/dnamove/ phylip-3.695/src/testdata/dnamove/dnamoveinfile.txt phylip-3.695/src/testdata/protdist/ phylip-3.695/src/testdata/protdist/protdistinfile.txt phylip-3.695/src/testdata/protdist/protdistoutfile.txt phylip-3.695/src/testdata/protdist/protdistcats.txt phylip-3.695/src/testdata/protdist/protdistweights.txt phylip-3.695/src/testdata/neighbor/ phylip-3.695/src/testdata/neighbor/neighborinfile.txt phylip-3.695/src/testdata/neighbor/neighboroutfile.txt phylip-3.695/src/testdata/neighbor/neighborouttree.txt phylip-3.695/src/testdata/dnadist/ phylip-3.695/src/testdata/dnadist/dnadistinfile.txt phylip-3.695/src/testdata/dnadist/dnadistoutfile.txt phylip-3.695/src/testdata/penny/ phylip-3.695/src/testdata/penny/pennyouttree.txt phylip-3.695/src/testdata/penny/pennyoutfile.txt phylip-3.695/src/testdata/penny/pennyinfile.txt phylip-3.695/src/testdata/treedist/ phylip-3.695/src/testdata/treedist/treedistoutfile1.txt phylip-3.695/src/testdata/treedist/treedistintree2.txt phylip-3.695/src/testdata/treedist/treedistintree1.txt phylip-3.695/src/testdata/treedist/treedistoutfile2.txt phylip-3.695/src/testdata/restdist/ phylip-3.695/src/testdata/restdist/restdistoutfile.txt phylip-3.695/src/testdata/restdist/restdistinfile.txt phylip-3.695/src/testdata/dollop/ phylip-3.695/src/testdata/dollop/dollopouttree.txt phylip-3.695/src/testdata/dollop/dollopoutfile.txt phylip-3.695/src/testdata/dollop/dollopinfile.txt phylip-3.695/src/testdata/seqboot/ phylip-3.695/src/testdata/seqboot/seqbootinfile.txt phylip-3.695/src/testdata/seqboot/seqbootoutfile.txt phylip-3.695/src/testdata/retree/ phylip-3.695/src/testdata/retree/retreeintree.txt phylip-3.695/src/testdata/protpars/ phylip-3.695/src/testdata/protpars/protparsinfile.txt phylip-3.695/src/testdata/protpars/protparsouttree.txt phylip-3.695/src/testdata/protpars/protparsoutfile.txt phylip-3.695/src/contml.c phylip-3.695/src/printree.h phylip-3.695/src/seqboot.c phylip-3.695/src/mlclock.c phylip-3.695/src/font2 phylip-3.695/src/discrete.h phylip-3.695/src/interface.c phylip-3.695/src/dnamlk.c phylip-3.695/src/draw2.c phylip-3.695/src/phylip.h phylip-3.695/src/disc.h phylip-3.695/src/mlclock.h phylip-3.695/src/dnadist.c phylip-3.695/src/cont.h phylip-3.695/src/dnacomp.c phylip-3.695/src/font1 phylip-3.695/src/draw.c phylip-3.695/src/factor.c phylip-3.695/src/pars.c phylip-3.695/src/font5 phylip-3.695/src/Makefile.cyg phylip-3.695/src/dnapenny.c phylip-3.695/src/linkmac sudo -u fink-bld [ENV] sh -c /tmp/fink.CGobs [ -r /sw/fink/dists/stable/main/finkinfo/sci/phylip.patch ] sudo -u fink-bld [ENV] sh -c /tmp/fink.9YF5H /tmp/fink.IJ22I #!/bin/sh -ev sed 's|@FINK_PREFIX@|/sw|g' Copyright cd src && make -f Makefile.osx all Building PHYLIP version 3.695 gcc -ggdb -DMACOS10 -I/sw/include -c -o clique.o clique.c gcc -ggdb -DMACOS10 -I/sw/include -c -o disc.o disc.c gcc -ggdb -DMACOS10 -I/sw/include -c -o phylip.o phylip.c gcc -ggdb -DMACOS10 clique.o disc.o phylip.o -lm -o clique gcc -ggdb -DMACOS10 -I/sw/include -c -o consense.o consense.c gcc -ggdb -DMACOS10 -I/sw/include -c -o cons.o cons.c gcc -ggdb -DMACOS10 consense.o phylip.o cons.o -lm -o consense gcc -ggdb -DMACOS10 -I/sw/include -c -o contml.o contml.c gcc -ggdb -DMACOS10 -I/sw/include -c -o cont.o cont.c gcc -ggdb -DMACOS10 contml.o cont.o phylip.o -lm -o contml gcc -ggdb -DMACOS10 -I/sw/include -c -o contrast.o contrast.c gcc -ggdb -DMACOS10 contrast.o cont.o phylip.o -lm -o contrast gcc -ggdb -DMACOS10 -I/sw/include -c -o dnacomp.o dnacomp.c gcc -ggdb -DMACOS10 -I/sw/include -c -o seq.o seq.c gcc -ggdb -DMACOS10 dnacomp.o seq.o phylip.o -lm -o dnacomp gcc -ggdb -DMACOS10 -I/sw/include -c -o dnadist.o dnadist.c gcc -ggdb -DMACOS10 dnadist.o seq.o phylip.o -lm -o dnadist gcc -ggdb -DMACOS10 -I/sw/include -c -o dnainvar.o dnainvar.c gcc -ggdb -DMACOS10 dnainvar.o seq.o phylip.o -lm -o dnainvar gcc -ggdb -DMACOS10 -I/sw/include -c -o dnaml.o dnaml.c gcc -ggdb -DMACOS10 dnaml.o seq.o phylip.o -lm -o dnaml gcc -ggdb -DMACOS10 -I/sw/include -c -o dnamlk.o dnamlk.c gcc -ggdb -DMACOS10 -I/sw/include -c -o mlclock.o mlclock.c gcc -ggdb -DMACOS10 -I/sw/include -c -o printree.o printree.c gcc -ggdb -DMACOS10 dnamlk.o seq.o phylip.o mlclock.o printree.o -lm -o dnamlk gcc -ggdb -DMACOS10 -I/sw/include -c -o dnamove.o dnamove.c gcc -ggdb -DMACOS10 -I/sw/include -c -o moves.o moves.c gcc -ggdb -DMACOS10 dnamove.o seq.o moves.o phylip.o -lm -o dnamove gcc -ggdb -DMACOS10 -I/sw/include -c -o dnapars.o dnapars.c gcc -ggdb -DMACOS10 dnapars.o seq.o phylip.o -lm -o dnapars gcc -ggdb -DMACOS10 -I/sw/include -c -o dnapenny.o dnapenny.c gcc -ggdb -DMACOS10 dnapenny.o seq.o phylip.o -lm -o dnapenny gcc -ggdb -DMACOS10 -I/sw/include -c -o dolmove.o dolmove.c gcc -ggdb -DMACOS10 -I/sw/include -c -o dollo.o dollo.c gcc -ggdb -DMACOS10 dolmove.o disc.o moves.o dollo.o phylip.o -lm -o dolmove gcc -ggdb -DMACOS10 -I/sw/include -c -o dollop.o dollop.c gcc -ggdb -DMACOS10 dollop.o disc.o dollo.o phylip.o -lm -o dollop gcc -ggdb -DMACOS10 -I/sw/include -c -o dolpenny.o dolpenny.c gcc -ggdb -DMACOS10 dolpenny.o disc.o dollo.o phylip.o -lm -o dolpenny gcc -ggdb -DMACOS10 -I/sw/include -c -o factor.o factor.c gcc -ggdb -DMACOS10 factor.o phylip.o -lm -o factor gcc -ggdb -DMACOS10 -I/sw/include -c -o fitch.o fitch.c gcc -ggdb -DMACOS10 -I/sw/include -c -o dist.o dist.c gcc -ggdb -DMACOS10 fitch.o dist.o phylip.o -lm -o fitch gcc -ggdb -DMACOS10 -I/sw/include -c -o gendist.o gendist.c gcc -ggdb -DMACOS10 gendist.o phylip.o -lm -o gendist gcc -ggdb -DMACOS10 -I/sw/include -c -o kitsch.o kitsch.c gcc -ggdb -DMACOS10 kitsch.o dist.o phylip.o -lm -o kitsch gcc -ggdb -DMACOS10 -I/sw/include -c -o mix.o mix.c gcc -ggdb -DMACOS10 -I/sw/include -c -o wagner.o wagner.c gcc -ggdb -DMACOS10 mix.o disc.o wagner.o phylip.o -lm -o mix gcc -ggdb -DMACOS10 -I/sw/include -c -o move.o move.c gcc -ggdb -DMACOS10 move.o disc.o moves.o wagner.o phylip.o -lm -o move gcc -ggdb -DMACOS10 -I/sw/include -c -o neighbor.o neighbor.c gcc -ggdb -DMACOS10 neighbor.o dist.o phylip.o -lm -o neighbor gcc -ggdb -DMACOS10 -I/sw/include -c -o pars.o pars.c gcc -ggdb -DMACOS10 -I/sw/include -c -o discrete.o discrete.c gcc -ggdb -DMACOS10 pars.o discrete.o phylip.o -lm -o pars gcc -ggdb -DMACOS10 -I/sw/include -c -o penny.o penny.c gcc -ggdb -DMACOS10 penny.o disc.o wagner.o phylip.o -lm -o penny gcc -ggdb -DMACOS10 -I/sw/include -c -o proml.o proml.c gcc -ggdb -DMACOS10 proml.o seq.o phylip.o -lm -o proml gcc -ggdb -DMACOS10 -I/sw/include -c -o promlk.o promlk.c gcc -ggdb -DMACOS10 promlk.o seq.o phylip.o mlclock.o printree.o -lm -o promlk gcc -ggdb -DMACOS10 -I/sw/include -c -o protdist.o protdist.c gcc -ggdb -DMACOS10 protdist.o seq.o phylip.o -lm -o protdist gcc -ggdb -DMACOS10 -I/sw/include -c -o protpars.o protpars.c gcc -ggdb -DMACOS10 protpars.o seq.o phylip.o -lm -o protpars gcc -ggdb -DMACOS10 -I/sw/include -c -o restdist.o restdist.c gcc -ggdb -DMACOS10 restdist.o seq.o phylip.o -lm -o restdist gcc -ggdb -DMACOS10 -I/sw/include -c -o restml.o restml.c gcc -ggdb -DMACOS10 restml.o seq.o phylip.o -lm -o restml gcc -ggdb -DMACOS10 -I/sw/include -c -o retree.o retree.c gcc -ggdb -DMACOS10 retree.o moves.o phylip.o -lm -o retree gcc -ggdb -DMACOS10 -I/sw/include -c -o seqboot.o seqboot.c gcc -ggdb -DMACOS10 seqboot.o seq.o phylip.o -lm -o seqboot gcc -ggdb -DMACOS10 -I/sw/include -c -o treedist.o treedist.c gcc -ggdb -DMACOS10 treedist.o cons.o phylip.o -lm -o treedist gcc -ggdb -DMACOS10 -c drawgram.c drawgram.c:2092:9: warning: implicit declaration of function 'makebox' is invalid in C99 [-Wimplicit-function-declaration] makebox(fontname,&xoffset,&yoffset,&scale,spp); ^ 1 warning generated. gcc -ggdb -DMACOS10 -c draw.c gcc -ggdb -DMACOS10 -c draw2.c gcc -ggdb -DMACOS10 draw.o draw2.o drawgram.o phylip.o -o drawgram gcc -ggdb -DMACOS10 -c drawtree.c drawtree.c:2998:9: warning: implicit declaration of function 'makebox' is invalid in C99 [-Wimplicit-function-declaration] makebox(fontname,&xoffset,&yoffset,&scale,spp); ^ 1 warning generated. gcc -ggdb -DMACOS10 draw.o draw2.o drawtree.o phylip.o -o drawtree gcc -ggdb -DMACOS10 -shared -install_name /sw/lib/libdrawgram.dylib drawgram.o draw.o draw2.o phylip.o -o libdrawgram.dylib gcc -ggdb -DMACOS10 -shared -install_name /sw/lib/libdrawtree.dylib drawtree.o draw.o draw2.o phylip.o -o libdrawtree.dylib Finished compiling. /bin/rm -rf /sw/build.build/root-phylip-3.69.5-2 /bin/mkdir -p /sw/build.build/root-phylip-3.69.5-2/sw /bin/mkdir -p /sw/build.build/root-phylip-3.69.5-2/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-phylip-3.69.5-2 sudo -u fink-bld [ENV] sh -c /tmp/fink.iKLYv install -d -m 755 /sw/build.build/root-phylip-3.69.5-2/sw/Applications/phylip cd src && make -f Makefile.osx install EXEDIR=/sw/build.build/root-phylip-3.69.5-2/sw/Applications/phylip Removing preexisting executables Removing preexisting testdata Ready for new executables /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o clique /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C clique mkdir -p clique.app/Contents/MacOS mkdir -p clique.app/Contents/Resources sed -e "s/IDENTIFIER/clique/" \ -e "s/COMMAND/clique.command/" \ -e "s/EXECUTABLE/clique/" \ -e "s/ICONNAME/clique/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > clique.app/Contents/Info.plist sed -e "s/EXECUTABLE/clique/" \ mac/command.in > clique.app/Contents/MacOS/clique.command chmod ug+x clique.app/Contents/MacOS/clique.command echo -n "APPL????" >clique.app/Contents/PkgInfo cp clique clique.app/Contents/MacOS/clique cp -f mac/clique.icns clique.app/Contents/Resources/clique.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o consense /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C consense mkdir -p consense.app/Contents/MacOS mkdir -p consense.app/Contents/Resources sed -e "s/IDENTIFIER/consense/" \ -e "s/COMMAND/consense.command/" \ -e "s/EXECUTABLE/consense/" \ -e "s/ICONNAME/consense/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > consense.app/Contents/Info.plist sed -e "s/EXECUTABLE/consense/" \ mac/command.in > consense.app/Contents/MacOS/consense.command chmod ug+x consense.app/Contents/MacOS/consense.command echo -n "APPL????" >consense.app/Contents/PkgInfo cp consense consense.app/Contents/MacOS/consense cp -f mac/consense.icns consense.app/Contents/Resources/consense.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o contml /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C contml mkdir -p contml.app/Contents/MacOS mkdir -p contml.app/Contents/Resources sed -e "s/IDENTIFIER/contml/" \ -e "s/COMMAND/contml.command/" \ -e "s/EXECUTABLE/contml/" \ -e "s/ICONNAME/contml/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > contml.app/Contents/Info.plist sed -e "s/EXECUTABLE/contml/" \ mac/command.in > contml.app/Contents/MacOS/contml.command chmod ug+x contml.app/Contents/MacOS/contml.command echo -n "APPL????" >contml.app/Contents/PkgInfo cp contml contml.app/Contents/MacOS/contml cp -f mac/contml.icns contml.app/Contents/Resources/contml.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o contrast /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C contrast mkdir -p contrast.app/Contents/MacOS mkdir -p contrast.app/Contents/Resources sed -e "s/IDENTIFIER/contrast/" \ -e "s/COMMAND/contrast.command/" \ -e "s/EXECUTABLE/contrast/" \ -e "s/ICONNAME/contrast/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > contrast.app/Contents/Info.plist sed -e "s/EXECUTABLE/contrast/" \ mac/command.in > contrast.app/Contents/MacOS/contrast.command chmod ug+x contrast.app/Contents/MacOS/contrast.command echo -n "APPL????" >contrast.app/Contents/PkgInfo cp contrast contrast.app/Contents/MacOS/contrast cp -f mac/contrast.icns contrast.app/Contents/Resources/contrast.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o dnacomp /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C dnacomp mkdir -p dnacomp.app/Contents/MacOS mkdir -p dnacomp.app/Contents/Resources sed -e "s/IDENTIFIER/dnacomp/" \ -e "s/COMMAND/dnacomp.command/" \ -e "s/EXECUTABLE/dnacomp/" \ -e "s/ICONNAME/dnacomp/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > dnacomp.app/Contents/Info.plist sed -e "s/EXECUTABLE/dnacomp/" \ mac/command.in > dnacomp.app/Contents/MacOS/dnacomp.command chmod ug+x dnacomp.app/Contents/MacOS/dnacomp.command echo -n "APPL????" >dnacomp.app/Contents/PkgInfo cp dnacomp dnacomp.app/Contents/MacOS/dnacomp cp -f mac/dnacomp.icns dnacomp.app/Contents/Resources/dnacomp.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o dnadist /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C dnadist mkdir -p dnadist.app/Contents/MacOS mkdir -p dnadist.app/Contents/Resources sed -e "s/IDENTIFIER/dnadist/" \ -e "s/COMMAND/dnadist.command/" \ -e "s/EXECUTABLE/dnadist/" \ -e "s/ICONNAME/dnadist/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > dnadist.app/Contents/Info.plist sed -e "s/EXECUTABLE/dnadist/" \ mac/command.in > dnadist.app/Contents/MacOS/dnadist.command chmod ug+x dnadist.app/Contents/MacOS/dnadist.command echo -n "APPL????" >dnadist.app/Contents/PkgInfo cp dnadist dnadist.app/Contents/MacOS/dnadist cp -f mac/dnadist.icns dnadist.app/Contents/Resources/dnadist.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o dnainvar /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C dnainvar mkdir -p dnainvar.app/Contents/MacOS mkdir -p dnainvar.app/Contents/Resources sed -e "s/IDENTIFIER/dnainvar/" \ -e "s/COMMAND/dnainvar.command/" \ -e "s/EXECUTABLE/dnainvar/" \ -e "s/ICONNAME/dnainvar/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > dnainvar.app/Contents/Info.plist sed -e "s/EXECUTABLE/dnainvar/" \ mac/command.in > dnainvar.app/Contents/MacOS/dnainvar.command chmod ug+x dnainvar.app/Contents/MacOS/dnainvar.command echo -n "APPL????" >dnainvar.app/Contents/PkgInfo cp dnainvar dnainvar.app/Contents/MacOS/dnainvar cp -f mac/dnainvar.icns dnainvar.app/Contents/Resources/dnainvar.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o dnaml /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C dnaml mkdir -p dnaml.app/Contents/MacOS mkdir -p dnaml.app/Contents/Resources sed -e "s/IDENTIFIER/dnaml/" \ -e "s/COMMAND/dnaml.command/" \ -e "s/EXECUTABLE/dnaml/" \ -e "s/ICONNAME/dnaml/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > dnaml.app/Contents/Info.plist sed -e "s/EXECUTABLE/dnaml/" \ mac/command.in > dnaml.app/Contents/MacOS/dnaml.command chmod ug+x dnaml.app/Contents/MacOS/dnaml.command echo -n "APPL????" >dnaml.app/Contents/PkgInfo cp dnaml dnaml.app/Contents/MacOS/dnaml cp -f mac/dnaml.icns dnaml.app/Contents/Resources/dnaml.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o dnamlk /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C dnamlk mkdir -p dnamlk.app/Contents/MacOS mkdir -p dnamlk.app/Contents/Resources sed -e "s/IDENTIFIER/dnamlk/" \ -e "s/COMMAND/dnamlk.command/" \ -e "s/EXECUTABLE/dnamlk/" \ -e "s/ICONNAME/dnamlk/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > dnamlk.app/Contents/Info.plist sed -e "s/EXECUTABLE/dnamlk/" \ mac/command.in > dnamlk.app/Contents/MacOS/dnamlk.command chmod ug+x dnamlk.app/Contents/MacOS/dnamlk.command echo -n "APPL????" >dnamlk.app/Contents/PkgInfo cp dnamlk dnamlk.app/Contents/MacOS/dnamlk cp -f mac/dnamlk.icns dnamlk.app/Contents/Resources/dnamlk.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o dnamove /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C dnamove mkdir -p dnamove.app/Contents/MacOS mkdir -p dnamove.app/Contents/Resources sed -e "s/IDENTIFIER/dnamove/" \ -e "s/COMMAND/dnamove.command/" \ -e "s/EXECUTABLE/dnamove/" \ -e "s/ICONNAME/dnamove/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > dnamove.app/Contents/Info.plist sed -e "s/EXECUTABLE/dnamove/" \ mac/command.in > dnamove.app/Contents/MacOS/dnamove.command chmod ug+x dnamove.app/Contents/MacOS/dnamove.command echo -n "APPL????" >dnamove.app/Contents/PkgInfo cp dnamove dnamove.app/Contents/MacOS/dnamove cp -f mac/dnamove.icns dnamove.app/Contents/Resources/dnamove.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o dnapars /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C dnapars mkdir -p dnapars.app/Contents/MacOS mkdir -p dnapars.app/Contents/Resources sed -e "s/IDENTIFIER/dnapars/" \ -e "s/COMMAND/dnapars.command/" \ -e "s/EXECUTABLE/dnapars/" \ -e "s/ICONNAME/dnapars/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > dnapars.app/Contents/Info.plist sed -e "s/EXECUTABLE/dnapars/" \ mac/command.in > dnapars.app/Contents/MacOS/dnapars.command chmod ug+x dnapars.app/Contents/MacOS/dnapars.command echo -n "APPL????" >dnapars.app/Contents/PkgInfo cp dnapars dnapars.app/Contents/MacOS/dnapars cp -f mac/dnapars.icns dnapars.app/Contents/Resources/dnapars.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o dnapenny /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C dnapenny mkdir -p dnapenny.app/Contents/MacOS mkdir -p dnapenny.app/Contents/Resources sed -e "s/IDENTIFIER/dnapenny/" \ -e "s/COMMAND/dnapenny.command/" \ -e "s/EXECUTABLE/dnapenny/" \ -e "s/ICONNAME/dnapenny/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > dnapenny.app/Contents/Info.plist sed -e "s/EXECUTABLE/dnapenny/" \ mac/command.in > dnapenny.app/Contents/MacOS/dnapenny.command chmod ug+x dnapenny.app/Contents/MacOS/dnapenny.command echo -n "APPL????" >dnapenny.app/Contents/PkgInfo cp dnapenny dnapenny.app/Contents/MacOS/dnapenny cp -f mac/dnapenny.icns dnapenny.app/Contents/Resources/dnapenny.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o dollop /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C dollop mkdir -p dollop.app/Contents/MacOS mkdir -p dollop.app/Contents/Resources sed -e "s/IDENTIFIER/dollop/" \ -e "s/COMMAND/dollop.command/" \ -e "s/EXECUTABLE/dollop/" \ -e "s/ICONNAME/dollop/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > dollop.app/Contents/Info.plist sed -e "s/EXECUTABLE/dollop/" \ mac/command.in > dollop.app/Contents/MacOS/dollop.command chmod ug+x dollop.app/Contents/MacOS/dollop.command echo -n "APPL????" >dollop.app/Contents/PkgInfo cp dollop dollop.app/Contents/MacOS/dollop cp -f mac/dollop.icns dollop.app/Contents/Resources/dollop.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o dolmove /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C dolmove mkdir -p dolmove.app/Contents/MacOS mkdir -p dolmove.app/Contents/Resources sed -e "s/IDENTIFIER/dolmove/" \ -e "s/COMMAND/dolmove.command/" \ -e "s/EXECUTABLE/dolmove/" \ -e "s/ICONNAME/dolmove/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > dolmove.app/Contents/Info.plist sed -e "s/EXECUTABLE/dolmove/" \ mac/command.in > dolmove.app/Contents/MacOS/dolmove.command chmod ug+x dolmove.app/Contents/MacOS/dolmove.command echo -n "APPL????" >dolmove.app/Contents/PkgInfo cp dolmove dolmove.app/Contents/MacOS/dolmove cp -f mac/dolmove.icns dolmove.app/Contents/Resources/dolmove.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o dolpenny /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C dolpenny mkdir -p dolpenny.app/Contents/MacOS mkdir -p dolpenny.app/Contents/Resources sed -e "s/IDENTIFIER/dolpenny/" \ -e "s/COMMAND/dolpenny.command/" \ -e "s/EXECUTABLE/dolpenny/" \ -e "s/ICONNAME/dolpenny/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > dolpenny.app/Contents/Info.plist sed -e "s/EXECUTABLE/dolpenny/" \ mac/command.in > dolpenny.app/Contents/MacOS/dolpenny.command chmod ug+x dolpenny.app/Contents/MacOS/dolpenny.command echo -n "APPL????" >dolpenny.app/Contents/PkgInfo cp dolpenny dolpenny.app/Contents/MacOS/dolpenny cp -f mac/dolpenny.icns dolpenny.app/Contents/Resources/dolpenny.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o drawgram /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C drawgram mkdir -p drawgram.app/Contents/MacOS mkdir -p drawgram.app/Contents/Resources sed -e "s/IDENTIFIER/drawgram/" \ -e "s/COMMAND/drawgram.command/" \ -e "s/EXECUTABLE/drawgram/" \ -e "s/ICONNAME/drawgram/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > drawgram.app/Contents/Info.plist sed -e "s/EXECUTABLE/drawgram/" \ mac/command.in > drawgram.app/Contents/MacOS/drawgram.command chmod ug+x drawgram.app/Contents/MacOS/drawgram.command echo -n "APPL????" >drawgram.app/Contents/PkgInfo cp drawgram drawgram.app/Contents/MacOS/drawgram cp -f mac/drawgram.icns drawgram.app/Contents/Resources/drawgram.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o drawtree /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C drawtree mkdir -p drawtree.app/Contents/MacOS mkdir -p drawtree.app/Contents/Resources sed -e "s/IDENTIFIER/drawtree/" \ -e "s/COMMAND/drawtree.command/" \ -e "s/EXECUTABLE/drawtree/" \ -e "s/ICONNAME/drawtree/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > drawtree.app/Contents/Info.plist sed -e "s/EXECUTABLE/drawtree/" \ mac/command.in > drawtree.app/Contents/MacOS/drawtree.command chmod ug+x drawtree.app/Contents/MacOS/drawtree.command echo -n "APPL????" >drawtree.app/Contents/PkgInfo cp drawtree drawtree.app/Contents/MacOS/drawtree cp -f mac/drawtree.icns drawtree.app/Contents/Resources/drawtree.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o factor /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C factor mkdir -p factor.app/Contents/MacOS mkdir -p factor.app/Contents/Resources sed -e "s/IDENTIFIER/factor/" \ -e "s/COMMAND/factor.command/" \ -e "s/EXECUTABLE/factor/" \ -e "s/ICONNAME/factor/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > factor.app/Contents/Info.plist sed -e "s/EXECUTABLE/factor/" \ mac/command.in > factor.app/Contents/MacOS/factor.command chmod ug+x factor.app/Contents/MacOS/factor.command echo -n "APPL????" >factor.app/Contents/PkgInfo cp factor factor.app/Contents/MacOS/factor cp -f mac/factor.icns factor.app/Contents/Resources/factor.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o fitch /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C fitch mkdir -p fitch.app/Contents/MacOS mkdir -p fitch.app/Contents/Resources sed -e "s/IDENTIFIER/fitch/" \ -e "s/COMMAND/fitch.command/" \ -e "s/EXECUTABLE/fitch/" \ -e "s/ICONNAME/fitch/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > fitch.app/Contents/Info.plist sed -e "s/EXECUTABLE/fitch/" \ mac/command.in > fitch.app/Contents/MacOS/fitch.command chmod ug+x fitch.app/Contents/MacOS/fitch.command echo -n "APPL????" >fitch.app/Contents/PkgInfo cp fitch fitch.app/Contents/MacOS/fitch cp -f mac/fitch.icns fitch.app/Contents/Resources/fitch.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o gendist /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C gendist mkdir -p gendist.app/Contents/MacOS mkdir -p gendist.app/Contents/Resources sed -e "s/IDENTIFIER/gendist/" \ -e "s/COMMAND/gendist.command/" \ -e "s/EXECUTABLE/gendist/" \ -e "s/ICONNAME/gendist/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > gendist.app/Contents/Info.plist sed -e "s/EXECUTABLE/gendist/" \ mac/command.in > gendist.app/Contents/MacOS/gendist.command chmod ug+x gendist.app/Contents/MacOS/gendist.command echo -n "APPL????" >gendist.app/Contents/PkgInfo cp gendist gendist.app/Contents/MacOS/gendist cp -f mac/gendist.icns gendist.app/Contents/Resources/gendist.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o kitsch /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C kitsch mkdir -p kitsch.app/Contents/MacOS mkdir -p kitsch.app/Contents/Resources sed -e "s/IDENTIFIER/kitsch/" \ -e "s/COMMAND/kitsch.command/" \ -e "s/EXECUTABLE/kitsch/" \ -e "s/ICONNAME/kitsch/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > kitsch.app/Contents/Info.plist sed -e "s/EXECUTABLE/kitsch/" \ mac/command.in > kitsch.app/Contents/MacOS/kitsch.command chmod ug+x kitsch.app/Contents/MacOS/kitsch.command echo -n "APPL????" >kitsch.app/Contents/PkgInfo cp kitsch kitsch.app/Contents/MacOS/kitsch cp -f mac/kitsch.icns kitsch.app/Contents/Resources/kitsch.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o mix /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C mix mkdir -p mix.app/Contents/MacOS mkdir -p mix.app/Contents/Resources sed -e "s/IDENTIFIER/mix/" \ -e "s/COMMAND/mix.command/" \ -e "s/EXECUTABLE/mix/" \ -e "s/ICONNAME/mix/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > mix.app/Contents/Info.plist sed -e "s/EXECUTABLE/mix/" \ mac/command.in > mix.app/Contents/MacOS/mix.command chmod ug+x mix.app/Contents/MacOS/mix.command echo -n "APPL????" >mix.app/Contents/PkgInfo cp mix mix.app/Contents/MacOS/mix cp -f mac/mix.icns mix.app/Contents/Resources/mix.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o move /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C move mkdir -p move.app/Contents/MacOS mkdir -p move.app/Contents/Resources sed -e "s/IDENTIFIER/move/" \ -e "s/COMMAND/move.command/" \ -e "s/EXECUTABLE/move/" \ -e "s/ICONNAME/move/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > move.app/Contents/Info.plist sed -e "s/EXECUTABLE/move/" \ mac/command.in > move.app/Contents/MacOS/move.command chmod ug+x move.app/Contents/MacOS/move.command echo -n "APPL????" >move.app/Contents/PkgInfo cp move move.app/Contents/MacOS/move cp -f mac/move.icns move.app/Contents/Resources/move.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o neighbor /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C neighbor mkdir -p neighbor.app/Contents/MacOS mkdir -p neighbor.app/Contents/Resources sed -e "s/IDENTIFIER/neighbor/" \ -e "s/COMMAND/neighbor.command/" \ -e "s/EXECUTABLE/neighbor/" \ -e "s/ICONNAME/neighbor/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > neighbor.app/Contents/Info.plist sed -e "s/EXECUTABLE/neighbor/" \ mac/command.in > neighbor.app/Contents/MacOS/neighbor.command chmod ug+x neighbor.app/Contents/MacOS/neighbor.command echo -n "APPL????" >neighbor.app/Contents/PkgInfo cp neighbor neighbor.app/Contents/MacOS/neighbor cp -f mac/neighbor.icns neighbor.app/Contents/Resources/neighbor.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o pars /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C pars mkdir -p pars.app/Contents/MacOS mkdir -p pars.app/Contents/Resources sed -e "s/IDENTIFIER/pars/" \ -e "s/COMMAND/pars.command/" \ -e "s/EXECUTABLE/pars/" \ -e "s/ICONNAME/pars/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > pars.app/Contents/Info.plist sed -e "s/EXECUTABLE/pars/" \ mac/command.in > pars.app/Contents/MacOS/pars.command chmod ug+x pars.app/Contents/MacOS/pars.command echo -n "APPL????" >pars.app/Contents/PkgInfo cp pars pars.app/Contents/MacOS/pars cp -f mac/pars.icns pars.app/Contents/Resources/pars.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o penny /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C penny mkdir -p penny.app/Contents/MacOS mkdir -p penny.app/Contents/Resources sed -e "s/IDENTIFIER/penny/" \ -e "s/COMMAND/penny.command/" \ -e "s/EXECUTABLE/penny/" \ -e "s/ICONNAME/penny/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > penny.app/Contents/Info.plist sed -e "s/EXECUTABLE/penny/" \ mac/command.in > penny.app/Contents/MacOS/penny.command chmod ug+x penny.app/Contents/MacOS/penny.command echo -n "APPL????" >penny.app/Contents/PkgInfo cp penny penny.app/Contents/MacOS/penny cp -f mac/penny.icns penny.app/Contents/Resources/penny.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o proml /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C proml mkdir -p proml.app/Contents/MacOS mkdir -p proml.app/Contents/Resources sed -e "s/IDENTIFIER/proml/" \ -e "s/COMMAND/proml.command/" \ -e "s/EXECUTABLE/proml/" \ -e "s/ICONNAME/proml/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > proml.app/Contents/Info.plist sed -e "s/EXECUTABLE/proml/" \ mac/command.in > proml.app/Contents/MacOS/proml.command chmod ug+x proml.app/Contents/MacOS/proml.command echo -n "APPL????" >proml.app/Contents/PkgInfo cp proml proml.app/Contents/MacOS/proml cp -f mac/proml.icns proml.app/Contents/Resources/proml.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o promlk /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C promlk mkdir -p promlk.app/Contents/MacOS mkdir -p promlk.app/Contents/Resources sed -e "s/IDENTIFIER/promlk/" \ -e "s/COMMAND/promlk.command/" \ -e "s/EXECUTABLE/promlk/" \ -e "s/ICONNAME/promlk/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > promlk.app/Contents/Info.plist sed -e "s/EXECUTABLE/promlk/" \ mac/command.in > promlk.app/Contents/MacOS/promlk.command chmod ug+x promlk.app/Contents/MacOS/promlk.command echo -n "APPL????" >promlk.app/Contents/PkgInfo cp promlk promlk.app/Contents/MacOS/promlk cp -f mac/promlk.icns promlk.app/Contents/Resources/promlk.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o protdist /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C protdist mkdir -p protdist.app/Contents/MacOS mkdir -p protdist.app/Contents/Resources sed -e "s/IDENTIFIER/protdist/" \ -e "s/COMMAND/protdist.command/" \ -e "s/EXECUTABLE/protdist/" \ -e "s/ICONNAME/protdist/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > protdist.app/Contents/Info.plist sed -e "s/EXECUTABLE/protdist/" \ mac/command.in > protdist.app/Contents/MacOS/protdist.command chmod ug+x protdist.app/Contents/MacOS/protdist.command echo -n "APPL????" >protdist.app/Contents/PkgInfo cp protdist protdist.app/Contents/MacOS/protdist cp -f mac/protdist.icns protdist.app/Contents/Resources/protdist.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o protpars /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C protpars mkdir -p protpars.app/Contents/MacOS mkdir -p protpars.app/Contents/Resources sed -e "s/IDENTIFIER/protpars/" \ -e "s/COMMAND/protpars.command/" \ -e "s/EXECUTABLE/protpars/" \ -e "s/ICONNAME/protpars/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > protpars.app/Contents/Info.plist sed -e "s/EXECUTABLE/protpars/" \ mac/command.in > protpars.app/Contents/MacOS/protpars.command chmod ug+x protpars.app/Contents/MacOS/protpars.command echo -n "APPL????" >protpars.app/Contents/PkgInfo cp protpars protpars.app/Contents/MacOS/protpars cp -f mac/protpars.icns protpars.app/Contents/Resources/protpars.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o restdist /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C restdist mkdir -p restdist.app/Contents/MacOS mkdir -p restdist.app/Contents/Resources sed -e "s/IDENTIFIER/restdist/" \ -e "s/COMMAND/restdist.command/" \ -e "s/EXECUTABLE/restdist/" \ -e "s/ICONNAME/restdist/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > restdist.app/Contents/Info.plist sed -e "s/EXECUTABLE/restdist/" \ mac/command.in > restdist.app/Contents/MacOS/restdist.command chmod ug+x restdist.app/Contents/MacOS/restdist.command echo -n "APPL????" >restdist.app/Contents/PkgInfo cp restdist restdist.app/Contents/MacOS/restdist cp -f mac/restdist.icns restdist.app/Contents/Resources/restdist.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o restml /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C restml mkdir -p restml.app/Contents/MacOS mkdir -p restml.app/Contents/Resources sed -e "s/IDENTIFIER/restml/" \ -e "s/COMMAND/restml.command/" \ -e "s/EXECUTABLE/restml/" \ -e "s/ICONNAME/restml/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > restml.app/Contents/Info.plist sed -e "s/EXECUTABLE/restml/" \ mac/command.in > restml.app/Contents/MacOS/restml.command chmod ug+x restml.app/Contents/MacOS/restml.command echo -n "APPL????" >restml.app/Contents/PkgInfo cp restml restml.app/Contents/MacOS/restml cp -f mac/restml.icns restml.app/Contents/Resources/restml.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o retree /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C retree mkdir -p retree.app/Contents/MacOS mkdir -p retree.app/Contents/Resources sed -e "s/IDENTIFIER/retree/" \ -e "s/COMMAND/retree.command/" \ -e "s/EXECUTABLE/retree/" \ -e "s/ICONNAME/retree/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > retree.app/Contents/Info.plist sed -e "s/EXECUTABLE/retree/" \ mac/command.in > retree.app/Contents/MacOS/retree.command chmod ug+x retree.app/Contents/MacOS/retree.command echo -n "APPL????" >retree.app/Contents/PkgInfo cp retree retree.app/Contents/MacOS/retree cp -f mac/retree.icns retree.app/Contents/Resources/retree.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o seqboot /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C seqboot mkdir -p seqboot.app/Contents/MacOS mkdir -p seqboot.app/Contents/Resources sed -e "s/IDENTIFIER/seqboot/" \ -e "s/COMMAND/seqboot.command/" \ -e "s/EXECUTABLE/seqboot/" \ -e "s/ICONNAME/seqboot/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > seqboot.app/Contents/Info.plist sed -e "s/EXECUTABLE/seqboot/" \ mac/command.in > seqboot.app/Contents/MacOS/seqboot.command chmod ug+x seqboot.app/Contents/MacOS/seqboot.command echo -n "APPL????" >seqboot.app/Contents/PkgInfo cp seqboot seqboot.app/Contents/MacOS/seqboot cp -f mac/seqboot.icns seqboot.app/Contents/Resources/seqboot.icns /Applications/Xcode.app/Contents/Developer/Tools/Rez -d __DARWIN__ -t APPL Carbon.r -o treedist /Applications/Xcode.app/Contents/Developer/Tools/SetFile -a C treedist mkdir -p treedist.app/Contents/MacOS mkdir -p treedist.app/Contents/Resources sed -e "s/IDENTIFIER/treedist/" \ -e "s/COMMAND/treedist.command/" \ -e "s/EXECUTABLE/treedist/" \ -e "s/ICONNAME/treedist/" \ -e "s/VERSION/3.695/" \ mac/Info.plist.in > treedist.app/Contents/Info.plist sed -e "s/EXECUTABLE/treedist/" \ mac/command.in > treedist.app/Contents/MacOS/treedist.command chmod ug+x treedist.app/Contents/MacOS/treedist.command echo -n "APPL????" >treedist.app/Contents/PkgInfo cp treedist treedist.app/Contents/MacOS/treedist cp -f mac/treedist.icns treedist.app/Contents/Resources/treedist.icns Installing PHYLIP v3.6 binaries in /sw/build.build/root-phylip-3.69.5-2/sw/Applications/phylip Installing dynamic libraries in /sw/build.build/root-phylip-3.69.5-2/sw/Applications/phylip Installing jar files in /sw/build.build/root-phylip-3.69.5-2/sw/Applications/phylip Installing font files in /sw/build.build/root-phylip-3.69.5-2/sw/Applications/phylip Copying testdata to /sw/build.build/root-phylip-3.69.5-2/sw/Applications/phylip/testdata mkdir /sw/build.build/root-phylip-3.69.5-2/sw/Applications/phylip/testdata for i in clique consense contml contrast dnacomp dnadist dnainvar dnaml dnamlk dnamove dnapars dnapenny dollop dolmove dolpenny drawgram drawtree factor fitch gendist kitsch mix move neighbor pars penny proml promlk protdist protpars restdist restml retree seqboot treedist; do \ mkdir /sw/build.build/root-phylip-3.69.5-2/sw/Applications/phylip/testdata/$i; \ cp testdata/$i/*.txt /sw/build.build/root-phylip-3.69.5-2/sw/Applications/phylip/testdata/$i; \ done Finished installation. Removing object files to save space Finished removing object files. Now will remove executable files from the current directory, but not from the executables directory. (If some are not here, the makefile will terminate with an error message but this is not a problem) Removing executables from this directory Finished cleanup. Done. install -d -m 755 /sw/build.build/root-phylip-3.69.5-2/sw/share/phylip install -m 644 /sw/build.build/root-phylip-3.69.5-2/sw/Applications/phylip/font* /sw/build.build/root-phylip-3.69.5-2/sw/share/phylip install -d -m 755 /sw/build.build/root-phylip-3.69.5-2/sw/share/phylip ln -s font1 /sw/build.build/root-phylip-3.69.5-2/sw/share/phylip/fontfile rm -f /sw/build.build/root-phylip-3.69.5-2/sw/Applications/phylip/font* mv /sw/build.build/root-phylip-3.69.5-2/sw/Applications/phylip/testdata /sw/build.build/root-phylip-3.69.5-2/sw/share/phylip install -d -m 755 /sw/build.build/root-phylip-3.69.5-2/sw/lib mv /sw/build.build/root-phylip-3.69.5-2/sw/Applications/phylip/*.dylib /sw/build.build/root-phylip-3.69.5-2/sw/lib sudo -u fink-bld [ENV] sh -c /tmp/fink.7r0gK /usr/bin/install -d -m 700 /sw/build.build/root-phylip-3.69.5-2/sw/share/doc/phylip /bin/cp -r doc/ /sw/build.build/root-phylip-3.69.5-2/sw/share/doc/phylip/ /bin/cp -r phylip.html /sw/build.build/root-phylip-3.69.5-2/sw/share/doc/phylip/ /bin/cp -r Copyright /sw/build.build/root-phylip-3.69.5-2/sw/share/doc/phylip/ /bin/chmod -R go=u-w /sw/build.build/root-phylip-3.69.5-2/sw/share/doc/phylip /bin/rm -f /sw/build.build/root-phylip-3.69.5-2/sw/info/dir /sw/build.build/root-phylip-3.69.5-2/sw/info/dir.old /sw/build.build/root-phylip-3.69.5-2/sw/share/info/dir /sw/build.build/root-phylip-3.69.5-2/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-phylip-3.69.5-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `phylip' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/phylip_3.69.5-2_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-phylip-3.69.5-2 (Reading database ... 4406 files and directories currently installed.) Removing fink-buildlock-phylip-3.69.5-2 ...