printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild probe 2>&1 The package 'probe' will be built without being installed. Reading build dependency for probe-2.12.071128-1... Reading dependency for probe-2.12.071128-1... Reading build conflict for probe-2.12.071128-1... The following package will be rebuilt: probe curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/probe.2.12.071128.src.zip % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 34 126k 34 44648 0 0 105k 0 0:00:01 --:--:-- 0:00:01 105k 100 126k 100 126k 0 0 238k 0 --:--:-- --:--:-- --:--:-- 238k Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-probe-2.12.071128-1 /sw/build.build dpkg-deb: building package `fink-buildlock-probe-2.12.071128-1' in `/sw/build.build/fink-buildlock-probe-2.12.071128-1_2014.08.04-10.41.24_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-probe-2.12.071128-1_2014.08.04-10.41.24_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-probe-2.12.071128-1. (Reading database ... 4740 files and directories currently installed.) Unpacking fink-buildlock-probe-2.12.071128-1 (from .../fink-buildlock-probe-2.12.071128-1_2014.08.04-10.41.24_darwin-x86_64.deb) ... Setting up fink-buildlock-probe-2.12.071128-1 (2014.08.04-10.41.24) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.8nUEC unzip -o /sw/src/probe.2.12.071128.src.zip Archive: /sw/src/probe.2.12.071128.src.zip creating: probe.2.12.071128.scr/ inflating: probe.2.12.071128.scr/abin.c inflating: probe.2.12.071128.scr/abin.h inflating: probe.2.12.071128.scr/atomprops.c inflating: probe.2.12.071128.scr/atomprops.h inflating: probe.2.12.071128.scr/autobondrot.c inflating: probe.2.12.071128.scr/autobondrot.h inflating: probe.2.12.071128.scr/buildep inflating: probe.2.12.071128.scr/dots.c inflating: probe.2.12.071128.scr/dots.h inflating: probe.2.12.071128.scr/geom3d.c inflating: probe.2.12.071128.scr/geom3d.h inflating: probe.2.12.071128.scr/hybrid_36_c.c inflating: probe.2.12.071128.scr/hybrid_36_c.h inflating: probe.2.12.071128.scr/libtbx_refresh.py inflating: probe.2.12.071128.scr/Makefile inflating: probe.2.12.071128.scr/Makefile.dcrHack inflating: probe.2.12.071128.scr/Makefile.linux inflating: probe.2.12.071128.scr/Makefile.macOSX inflating: probe.2.12.071128.scr/Makefile.sgi inflating: probe.2.12.071128.scr/Makefile.sgiDebug inflating: probe.2.12.071128.scr/Makefile.sgiold inflating: probe.2.12.071128.scr/Makefile.sun inflating: probe.2.12.071128.scr/Makefile.winxp-cygwin inflating: probe.2.12.071128.scr/parse.c inflating: probe.2.12.071128.scr/parse.h inflating: probe.2.12.071128.scr/probe.c inflating: probe.2.12.071128.scr/probe.h inflating: probe.2.12.071128.scr/README.autobondrot.txt inflating: probe.2.12.071128.scr/README.probe.txt inflating: probe.2.12.071128.scr/readPDBrecs.c inflating: probe.2.12.071128.scr/readPDBrecs.h inflating: probe.2.12.071128.scr/SConscript inflating: probe.2.12.071128.scr/select.c inflating: probe.2.12.071128.scr/select.h inflating: probe.2.12.071128.scr/stdconntable.c inflating: probe.2.12.071128.scr/stdconntable.h inflating: probe.2.12.071128.scr/utility.c inflating: probe.2.12.071128.scr/utility.h sudo -u fink-bld [ENV] sh -c /tmp/fink.d1kgU /tmp/fink.XITXp #!/bin/bash -evf make clean make cc -c probe.c cc -c dots.c cc -c abin.c cc -c readPDBrecs.c cc -c geom3d.c cc -c utility.c cc -c select.c cc -c parse.c cc -c atomprops.c cc -c stdconntable.c cc -c autobondrot.c cc -c hybrid_36_c.c probe.c:1408:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "DENSITY", 2)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1408:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "DENSITY", 2)){ ^ ( ) probe.c:1408:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "DENSITY", 2)){ ^ == probe.c:1411:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "RADIUS", 1)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1411:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "RADIUS", 1)){ ^ ( ) probe.c:1411:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "RADIUS", 1)){ ^ == probe.c:1432:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "ADDVDW", 3)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1432:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "ADDVDW", 3)){ ^ ( ) probe.c:1432:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "ADDVDW", 3)){ ^ == probe.c:1441:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "SPIKE", 2)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1441:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "SPIKE", 2)){ ^ ( ) probe.c:1441:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "SPIKE", 2)){ ^ == probe.c:1522:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "SCAN", 4)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1522:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "SCAN", 4)){ ^ ( ) probe.c:1522:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "SCAN", 4)){ ^ == probe.c:1626:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "COSCALE", 4)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1626:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "COSCALE", 4)){ ^ ( ) probe.c:1626:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "COSCALE", 4)){ ^ == probe.c:1629:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "HBREGULAR", 3)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1629:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "HBREGULAR", 3)){ ^ ( ) probe.c:1629:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "HBREGULAR", 3)){ ^ == probe.c:1632:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "HBCHARGED", 3)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1632:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "HBCHARGED", 3)){ ^ ( ) probe.c:1632:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "HBCHARGED", 3)){ ^ == probe.c:1638:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "CHO", 3)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1638:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "CHO", 3)){ ^ ( ) probe.c:1638:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "CHO", 3)){ ^ == probe.c:1654:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "GAPWEIGHT", 4)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1654:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "GAPWEIGHT", 4)){ ^ ( ) probe.c:1654:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "GAPWEIGHT", 4)){ ^ == probe.c:1657:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "BUMPWEIGHT", 5)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1657:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "BUMPWEIGHT", 5)){ ^ ( ) probe.c:1657:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "BUMPWEIGHT", 5)){ ^ == probe.c:1660:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "HBWEIGHT", 3)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1660:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "HBWEIGHT", 3)){ ^ ( ) probe.c:1660:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "HBWEIGHT", 3)){ ^ == probe.c:1663:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "DIVLow", 4)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1663:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "DIVLow", 4)){ ^ ( ) probe.c:1663:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "DIVLow", 4)){ ^ == probe.c:1666:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "DIVHigh", 4)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1666:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "DIVHigh", 4)){ ^ ( ) probe.c:1666:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "DIVHigh", 4)){ ^ == probe.c:1669:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "MINOCCupancy", 6)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1669:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "MINOCCupancy", 6)){ ^ ( ) probe.c:1669:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "MINOCCupancy", 6)){ ^ == probe.c:1672:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "NOOCCupancy", 5)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1672:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "NOOCCupancy", 5)){ ^ ( ) probe.c:1672:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "NOOCCupancy", 5)){ ^ == atomprops.c:63:17: warning: implicit declaration of function 'toupper' is invalid in C99 [-Wimplicit-function-declaration] probe.c:1785:13 name[i] = toupper(atomname[i]); : ^warning : using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "CHANGEs", 6)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1785:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "CHANGEs", 6)){ ^ ( ) probe.c:1785:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "CHANGEs", 6)){ ^ == probe.c:1788:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] else if(n = compArgStr(p+1, "DEBUG", 5)){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ probe.c:1788:13: note: place parentheses around the assignment to silence this warning else if(n = compArgStr(p+1, "DEBUG", 5)){ ^ ( ) probe.c:1788:13: note: use '==' to turn this assignment into an equality comparison else if(n = compArgStr(p+1, "DEBUG", 5)){ ^ == probe.c:2160:14: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(rec = getPDBrecord(fp)) { /*loop over all records in pdb file*/ ~~~~^~~~~~~~~~~~~~~~~~ probe.c:2160:14: note: place parentheses around the assignment to silence this warning while(rec = getPDBrecord(fp)) { /*loop over all records in pdb file*/ ^ ( ) probe.c:2160:14: note: use '==' to turn this assignment into an equality comparison while(rec = getPDBrecord(fp)) { /*loop over all records in pdb file*/ ^ == 1 warning generated. stdconntable.c:2737:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (g = h & 0xf0000000) { ~~^~~~~~~~~~~~~~~~ stdconntable.c:2737:13: note: place parentheses around the assignment to silence this warning if (g = h & 0xf0000000) { ^ ( ) stdconntable.c:2737:13: note: use '==' to turn this assignment into an equality comparison if (g = h & 0xf0000000) { ^ == probe.c:3872:19: warning: format string is not a string literal (potentially insecure) [-Wformat-security] fprintf(outf, color); /*** color reference*/ ^~~~~ 1 warning generated. 20 warnings generated. cc -o probe probe.o dots.o abin.o readPDBrecs.o geom3d.o utility.o select.o parse.o atomprops.o stdconntable.o autobondrot.o hybrid_36_c.o -lm /bin/rm -rf /sw/build.build/root-probe-2.12.071128-1 /bin/mkdir -p /sw/build.build/root-probe-2.12.071128-1/sw /bin/mkdir -p /sw/build.build/root-probe-2.12.071128-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-probe-2.12.071128-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.SBTQ2 /tmp/fink.MNzFe #!/bin/bash -evf mkdir -p /sw/build.build/root-probe-2.12.071128-1/sw/bin cp probe /sw/build.build/root-probe-2.12.071128-1/sw/bin/. sudo -u fink-bld [ENV] sh -c /tmp/fink.Rm2lj /usr/bin/install -d -m 700 /sw/build.build/root-probe-2.12.071128-1/sw/share/doc/probe /bin/cp -r README.autobondrot.txt /sw/build.build/root-probe-2.12.071128-1/sw/share/doc/probe/ /bin/cp -r README.probe.txt /sw/build.build/root-probe-2.12.071128-1/sw/share/doc/probe/ /bin/chmod -R go=u-w /sw/build.build/root-probe-2.12.071128-1/sw/share/doc/probe /bin/rm -f /sw/build.build/root-probe-2.12.071128-1/sw/info/dir /sw/build.build/root-probe-2.12.071128-1/sw/info/dir.old /sw/build.build/root-probe-2.12.071128-1/sw/share/info/dir /sw/build.build/root-probe-2.12.071128-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-probe-2.12.071128-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `probe' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/probe_2.12.071128-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-probe-2.12.071128-1 (Reading database ... 4741 files and directories currently installed.) Removing fink-buildlock-probe-2.12.071128-1 ...