printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild pymol-py27 2>&1 The package 'pymol-py27' will be built without being installed. Reading build dependency for pymol-py27-1.7.1.1-1... Reading dependency for pymol-py27-1.7.1.1-1... Reading build conflict for pymol-py27-1.7.1.1-1... The package 'libpng16' will be installed. Reading dependency for libpng16-1.6.12-1... Reading runtime dependency for libpng16-1.6.12-1... The package 'freeglut' will be installed. Reading dependency for freeglut-2.8.1-1... Reading runtime dependency for freeglut-2.8.1-1... The package 'glew' will be installed. Reading dependency for glew-1.10.0-1... Reading runtime dependency for glew-1.10.0-1... The package 'readline6' will be installed. Reading dependency for readline6-6.3.6-1... Reading runtime dependency for readline6-6.3.6-1... The package 'gdbm3' will be installed. Reading dependency for gdbm3-1.8.3-4... Reading runtime dependency for gdbm3-1.8.3-4... The package 'tcltk-dev' will be installed. Reading dependency for tcltk-dev-8.6.1-104... Reading runtime dependency for tcltk-dev-8.6.1-104... The package 'blt' will be installed. Reading dependency for blt-2.4z-160... Reading runtime dependency for blt-2.4z-160... The package 'swig' will be installed. Reading dependency for swig-3.0.0-1... Reading runtime dependency for swig-3.0.0-1... The package 'meschach' will be installed. Reading dependency for meschach-1.2b-1... Reading runtime dependency for meschach-1.2b-1... The package 'freetype219' will be installed. Reading dependency for freetype219-2.4.12-1... Reading runtime dependency for freetype219-2.4.12-1... The package 'python27' will be installed. Reading dependency for python27-2.7.8-1... Reading runtime dependency for python27-2.7.8-1... The package 'libpng16-shlibs' will be installed. Reading dependency for libpng16-shlibs-1.6.12-1... Reading runtime dependency for libpng16-shlibs-1.6.12-1... The package 'scipy-py27' will be installed. Reading dependency for scipy-py27-0.14.0-1... Reading runtime dependency for scipy-py27-0.14.0-1... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'pmw-py27' will be installed. Reading dependency for pmw-py27-1.3.3b-1... Reading runtime dependency for pmw-py27-1.3.3b-1... The package 'freeglut-shlibs' will be installed. Reading dependency for freeglut-shlibs-2.8.1-1... Reading runtime dependency for freeglut-shlibs-2.8.1-1... The package 'glew-shlibs' will be installed. Reading dependency for glew-shlibs-1.10.0-1... Reading runtime dependency for glew-shlibs-1.10.0-1... The package 'blt-shlibs' will be installed. Reading dependency for blt-shlibs-2.4z-160... Reading runtime dependency for blt-shlibs-2.4z-160... The package 'meschach-shlibs' will be installed. Reading dependency for meschach-shlibs-1.2b-1... Reading runtime dependency for meschach-shlibs-1.2b-1... The package 'freetype219-shlibs' will be installed. Reading dependency for freetype219-shlibs-2.4.12-1... Reading runtime dependency for freetype219-shlibs-2.4.12-1... The package 'pkgconfig' will be installed. Reading dependency for pkgconfig-0.28-1... Reading runtime dependency for pkgconfig-0.28-1... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'gdbm3-shlibs' will be installed. Reading dependency for gdbm3-shlibs-1.8.3-4... Reading runtime dependency for gdbm3-shlibs-1.8.3-4... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The package 'libjpeg9-shlibs' will be installed. Reading dependency for libjpeg9-shlibs-9a-1... Reading runtime dependency for libjpeg9-shlibs-9a-1... The package 'libpcre1-shlibs' will be installed. Reading dependency for libpcre1-shlibs-8.35-1... Reading runtime dependency for libpcre1-shlibs-8.35-1... The package 'python27-shlibs' will be installed. Reading dependency for python27-shlibs-2.7.8-1... Reading runtime dependency for python27-shlibs-2.7.8-1... The package 'db53-aes-shlibs' will be installed. Reading dependency for db53-aes-shlibs-5.3.21-2... Reading runtime dependency for db53-aes-shlibs-5.3.21-2... The package 'expat1-shlibs' will be installed. Reading dependency for expat1-shlibs-2.1.0-1... Reading runtime dependency for expat1-shlibs-2.1.0-1... The package 'libffi6-shlibs' will be installed. Reading dependency for libffi6-shlibs-3.1-1... Reading runtime dependency for libffi6-shlibs-3.1-1... The package 'libncursesw5-shlibs' will be installed. Reading dependency for libncursesw5-shlibs-5.9-20110507-1... Reading runtime dependency for libncursesw5-shlibs-5.9-20110507-1... The package 'openssl100-shlibs' will be installed. Reading dependency for openssl100-shlibs-1.0.1h-1... Reading runtime dependency for openssl100-shlibs-1.0.1h-1... The package 'sqlite3-shlibs' will be installed. Reading dependency for sqlite3-shlibs-3.8.3.1-1... Reading runtime dependency for sqlite3-shlibs-3.8.3.1-1... The package 'numpy-py27' will be installed. Reading dependency for numpy-py27-1.8.1-1... Reading runtime dependency for numpy-py27-1.8.1-1... The package 'gcc49-shlibs' will be installed. Reading dependency for gcc49-shlibs-4.9.1-1000... Reading runtime dependency for gcc49-shlibs-4.9.1-1000... The package 'suitesparse-shlibs' will be installed. Reading dependency for suitesparse-shlibs-4.2.1-1... Reading runtime dependency for suitesparse-shlibs-4.2.1-1... The package 'fontconfig2-shlibs' will be installed. Reading dependency for fontconfig2-shlibs-2.10.2-1... Reading runtime dependency for fontconfig2-shlibs-2.10.2-1... The package 'xft2-shlibs' will be installed. Reading dependency for xft2-shlibs-2.2.0-3... Reading runtime dependency for xft2-shlibs-2.2.0-3... The package 'glib2-shlibs' will be installed. Reading dependency for glib2-shlibs-2.22.4-8... Reading runtime dependency for glib2-shlibs-2.22.4-8... The package 'nose-py27' will be installed. Reading dependency for nose-py27-1.3.0-1... Reading runtime dependency for nose-py27-1.3.0-1... The package 'fontconfig-config' will be installed. Reading dependency for fontconfig-config-2.10.2-1... Reading runtime dependency for fontconfig-config-2.10.2-1... The package 'xdg-base' will be installed. Reading dependency for xdg-base-0.8-2... Reading runtime dependency for xdg-base-0.8-2... The package 'setuptools-tng-py27' will be installed. Reading dependency for setuptools-tng-py27-5.1-1... Reading runtime dependency for setuptools-tng-py27-5.1-1... The following package will be rebuilt: pymol-py27 The following 43 additional packages will be installed: blt blt-shlibs db53-aes-shlibs expat1-shlibs fontconfig-config fontconfig2-shlibs freeglut freeglut-shlibs freetype219 freetype219-shlibs gcc49-shlibs gdbm3 gdbm3-shlibs glew glew-shlibs glib2-shlibs libffi6-shlibs libjpeg9-shlibs libncursesw5-shlibs libpcre1-shlibs libpng16 libpng16-shlibs meschach meschach-shlibs nose-py27 numpy-py27 openssl100-shlibs pkgconfig pmw-py27 python27 python27-shlibs readline6 readline6-shlibs scipy-py27 setuptools-tng-py27 sqlite3-shlibs suitesparse-shlibs swig tcltk tcltk-dev tcltk-shlibs xdg-base xft2-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/pymol-1.7.1.1-src.tar.bz2 % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 8497k 0 85187 0 0 155k 0 0:00:54 --:--:-- 0:00:54 155k 5 8497k 5 500k 0 0 319k 0 0:00:26 0:00:01 0:00:25 319k 10 8497k 10 863k 0 0 292k 0 0:00:29 0:00:02 0:00:27 292k 13 8497k 13 1146k 0 0 267k 0 0:00:31 0:00:04 0:00:27 267k 15 8497k 15 1327k 0 0 292k 0 0:00:29 0:00:04 0:00:25 292k 24 8497k 24 2108k 0 0 379k 0 0:00:22 0:00:05 0:00:17 403k 34 8497k 34 2918k 0 0 446k 0 0:00:19 0:00:06 0:00:13 486k 44 8497k 44 3782k 0 0 502k 0 0:00:16 0:00:07 0:00:09 636k 47 8497k 47 4053k 0 0 474k 0 0:00:17 0:00:08 0:00:09 681k 56 8497k 56 4838k 0 0 507k 0 0:00:16 0:00:09 0:00:07 701k 65 8497k 65 5527k 0 0 524k 0 0:00:16 0:00:10 0:00:06 686k 72 8497k 72 6183k 0 0 536k 0 0:00:15 0:00:11 0:00:04 652k 73 8497k 73 6208k 0 0 494k 0 0:00:17 0:00:12 0:00:05 484k 73 8497k 73 6208k 0 0 458k 0 0:00:18 0:00:13 0:00:05 430k 75 8497k 75 6442k 0 0 443k 0 0:00:19 0:00:14 0:00:05 320k 83 8497k 83 7088k 0 0 456k 0 0:00:18 0:00:15 0:00:03 312k 86 8497k 86 7383k 0 0 446k 0 0:00:19 0:00:16 0:00:03 240k 95 8497k 95 8137k 0 0 464k 0 0:00:18 0:00:17 0:00:01 386k 100 8497k 100 8497k 0 0 473k 0 0:00:17 0:00:17 --:--:-- 520k curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/eMovie.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 15 98k 15 15691 0 0 52202 0 0:00:01 --:--:-- 0:00:01 52129 100 98k 100 98k 0 0 199k 0 --:--:-- --:--:-- --:--:-- 199k curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/eMovie_rigimol.inp % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1894 100 1894 0 0 9361 0 --:--:-- --:--:-- --:--:-- 9376 curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/pynmr_0.37f_src.tar.bz2 % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 18 219k 18 41749 0 0 93617 0 0:00:02 --:--:-- 0:00:02 93607 100 219k 100 219k 0 0 325k 0 --:--:-- --:--:-- --:--:-- 325k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/crypto/db53-aes-shlibs_5.3.21-2_darwin-x86_64.deb Selecting previously deselected package db53-aes-shlibs. (Reading database ... 4296 files and directories currently installed.) Unpacking db53-aes-shlibs (from .../db53-aes-shlibs_5.3.21-2_darwin-x86_64.deb) ... Setting up db53-aes-shlibs (5.3.21-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb Selecting previously deselected package expat1-shlibs. (Reading database ... 4306 files and directories currently installed.) Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ... Setting up expat1-shlibs (2.1.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/freeglut_2.8.1-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/freeglut-shlibs_2.8.1-1_darwin-x86_64.deb Selecting previously deselected package freeglut. (Reading database ... 4311 files and directories currently installed.) Unpacking freeglut (from .../freeglut_2.8.1-1_darwin-x86_64.deb) ... Selecting previously deselected package freeglut-shlibs. Unpacking freeglut-shlibs (from .../freeglut-shlibs_2.8.1-1_darwin-x86_64.deb) ... Setting up freeglut-shlibs (2.8.1-1) ... Setting up freeglut (2.8.1-1) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/freetype219_2.4.12-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/freetype219-shlibs_2.4.12-1_darwin-x86_64.deb Selecting previously deselected package freetype219. (Reading database ... 4341 files and directories currently installed.) Unpacking freetype219 (from .../freetype219_2.4.12-1_darwin-x86_64.deb) ... Selecting previously deselected package freetype219-shlibs. Unpacking freetype219-shlibs (from .../freetype219-shlibs_2.4.12-1_darwin-x86_64.deb) ... Setting up freetype219-shlibs (2.4.12-1) ... Setting up freetype219 (2.4.12-1) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb Selecting previously deselected package gcc49-shlibs. (Reading database ... 4540 files and directories currently installed.) Unpacking gcc49-shlibs (from .../gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb) ... Setting up gcc49-shlibs (4.9.1-1000) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/gdbm3_1.8.3-4_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/gdbm3-shlibs_1.8.3-4_darwin-x86_64.deb Selecting previously deselected package gdbm3. (Reading database ... 4585 files and directories currently installed.) Unpacking gdbm3 (from .../gdbm3_1.8.3-4_darwin-x86_64.deb) ... Selecting previously deselected package gdbm3-shlibs. Unpacking gdbm3-shlibs (from .../gdbm3-shlibs_1.8.3-4_darwin-x86_64.deb) ... Setting up gdbm3-shlibs (1.8.3-4) ... Setting up gdbm3 (1.8.3-4) ... Clearing dependency_libs of .la files being installed * GDBM: (gdbm). The GNU database manager. install-info(/sw/share/info/gdbm.info): creating new section `Programming & development tools' Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/glew_1.10.0-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/glew-shlibs_1.10.0-1_darwin-x86_64.deb Selecting previously deselected package glew. (Reading database ... 4608 files and directories currently installed.) Unpacking glew (from .../glew_1.10.0-1_darwin-x86_64.deb) ... Selecting previously deselected package glew-shlibs. Unpacking glew-shlibs (from .../glew-shlibs_1.10.0-1_darwin-x86_64.deb) ... Setting up glew-shlibs (1.10.0-1) ... Setting up glew (1.10.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libffi6-shlibs_3.1-1_darwin-x86_64.deb Selecting previously deselected package libffi6-shlibs. (Reading database ... 4640 files and directories currently installed.) Unpacking libffi6-shlibs (from .../libffi6-shlibs_3.1-1_darwin-x86_64.deb) ... Setting up libffi6-shlibs (3.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjpeg9-shlibs_9a-1_darwin-x86_64.deb Selecting previously deselected package libjpeg9-shlibs. (Reading database ... 4641 files and directories currently installed.) Unpacking libjpeg9-shlibs (from .../libjpeg9-shlibs_9a-1_darwin-x86_64.deb) ... Setting up libjpeg9-shlibs (9a-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/libncursesw5-shlibs_5.9-20110507-1_darwin-x86_64.deb Selecting previously deselected package libncursesw5-shlibs. (Reading database ... 4644 files and directories currently installed.) Unpacking libncursesw5-shlibs (from .../libncursesw5-shlibs_5.9-20110507-1_darwin-x86_64.deb) ... Setting up libncursesw5-shlibs (5.9-20110507-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libpcre1-shlibs_8.35-1_darwin-x86_64.deb Selecting previously deselected package libpcre1-shlibs. (Reading database ... 4655 files and directories currently installed.) Unpacking libpcre1-shlibs (from .../libpcre1-shlibs_8.35-1_darwin-x86_64.deb) ... Setting up libpcre1-shlibs (8.35-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/meschach_1.2b-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/meschach-shlibs_1.2b-1_darwin-x86_64.deb Selecting previously deselected package meschach. (Reading database ... 4668 files and directories currently installed.) Unpacking meschach (from .../meschach_1.2b-1_darwin-x86_64.deb) ... Selecting previously deselected package meschach-shlibs. Unpacking meschach-shlibs (from .../meschach-shlibs_1.2b-1_darwin-x86_64.deb) ... Setting up meschach-shlibs (1.2b-1) ... Setting up meschach (1.2b-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb Selecting previously deselected package openssl100-shlibs. (Reading database ... 4689 files and directories currently installed.) Unpacking openssl100-shlibs (from .../openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb) ... Setting up openssl100-shlibs (1.0.1h-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/readline6_6.3.6-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb Selecting previously deselected package readline6. (Reading database ... 4710 files and directories currently installed.) Unpacking readline6 (from .../readline6_6.3.6-1_darwin-x86_64.deb) ... Selecting previously deselected package readline6-shlibs. Unpacking readline6-shlibs (from .../readline6-shlibs_6.3.6-1_darwin-x86_64.deb) ... Setting up readline6-shlibs (6.3.6-1) ... Setting up readline6 (6.3.6-1) ... * History: (history). The GNU history library API. install-info(/sw/share/info/history.info): creating new section `Libraries' * Readline: (readline). The GNU readline library API. * RLuserman: (rluserman). The GNU readline library User's Manual. Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/database/sqlite3-shlibs_3.8.3.1-1_darwin-x86_64.deb Selecting previously deselected package sqlite3-shlibs. (Reading database ... 4765 files and directories currently installed.) Unpacking sqlite3-shlibs (from .../sqlite3-shlibs_3.8.3.1-1_darwin-x86_64.deb) ... Setting up sqlite3-shlibs (3.8.3.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/suitesparse-shlibs_4.2.1-1_darwin-x86_64.deb Selecting previously deselected package suitesparse-shlibs. (Reading database ... 4769 files and directories currently installed.) Unpacking suitesparse-shlibs (from .../suitesparse-shlibs_4.2.1-1_darwin-x86_64.deb) ... Setting up suitesparse-shlibs (4.2.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/swig_3.0.0-1_darwin-x86_64.deb Selecting previously deselected package swig. (Reading database ... 4795 files and directories currently installed.) Unpacking swig (from .../swig_3.0.0-1_darwin-x86_64.deb) ... Setting up swig (3.0.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/xdg-base_0.8-2_darwin-x86_64.deb Selecting previously deselected package xdg-base. (Reading database ... 5438 files and directories currently installed.) Unpacking xdg-base (from .../xdg-base_0.8-2_darwin-x86_64.deb) ... Setting up xdg-base (0.8-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig-config_2.10.2-1_darwin-x86_64.deb Selecting previously deselected package fontconfig2-shlibs. (Reading database ... 5440 files and directories currently installed.) Unpacking fontconfig2-shlibs (from .../fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.10.2-1_darwin-x86_64.deb) ... Setting up fontconfig-config (2.10.2-1) ... Setting up fontconfig2-shlibs (2.10.2-1) ... Reading buildlock packages... 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Setting up fink-buildlock-pymol-py27-1.7.1.1-1 (2014.07.31-10.13.10) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.mj_9X env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/pymol-1.7.1.1-src.tar.bz2 pymol-1.7.1.1/ pymol-1.7.1.1/.svnignore pymol-1.7.1.1/AUTHORS pymol-1.7.1.1/ChangeLog pymol-1.7.1.1/contrib/ pymol-1.7.1.1/contrib/champ/ pymol-1.7.1.1/contrib/champ/champ.c pymol-1.7.1.1/contrib/champ/champ.h pymol-1.7.1.1/contrib/champ/champ_module.c pymol-1.7.1.1/contrib/champ/chiral.c pymol-1.7.1.1/contrib/champ/chiral.h pymol-1.7.1.1/contrib/champ/const.h pymol-1.7.1.1/contrib/champ/err2.c pymol-1.7.1.1/contrib/champ/err2.h pymol-1.7.1.1/contrib/champ/feedback2.c pymol-1.7.1.1/contrib/champ/feedback2.h pymol-1.7.1.1/contrib/champ/LICENSE pymol-1.7.1.1/contrib/champ/list.c pymol-1.7.1.1/contrib/champ/list.h pymol-1.7.1.1/contrib/champ/mac.h pymol-1.7.1.1/contrib/champ/Makefile.am pymol-1.7.1.1/contrib/champ/Makefile.delsci 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pymol-1.7.1.1/contrib/modules/extensionclass.def pymol-1.7.1.1/contrib/modules/ExtensionClass.h pymol-1.7.1.1/contrib/modules/ExtensionClass.h-py152 pymol-1.7.1.1/contrib/modules/ExtensionClass.LICENSE pymol-1.7.1.1/contrib/modules/ExtensionClass.stx pymol-1.7.1.1/contrib/modules/Makefile.am pymol-1.7.1.1/contrib/modules/Makefile.in pymol-1.7.1.1/contrib/modules/Makefile.pre.in.src pymol-1.7.1.1/contrib/modules/Makefile.static pymol-1.7.1.1/contrib/modules/notes pymol-1.7.1.1/contrib/modules/Setup.in pymol-1.7.1.1/contrib/README pymol-1.7.1.1/contrib/sglite/ pymol-1.7.1.1/contrib/sglite/LICENSE pymol-1.7.1.1/contrib/sglite/Makefile.am pymol-1.7.1.1/contrib/sglite/Makefile.delsci pymol-1.7.1.1/contrib/sglite/Makefile.in pymol-1.7.1.1/contrib/sglite/runtests.c pymol-1.7.1.1/contrib/sglite/sgcb.c pymol-1.7.1.1/contrib/sglite/sgcharmx.c pymol-1.7.1.1/contrib/sglite/sgconst.h pymol-1.7.1.1/contrib/sglite/sgfile.c pymol-1.7.1.1/contrib/sglite/sggen.c pymol-1.7.1.1/contrib/sglite/sgglobal.c pymol-1.7.1.1/contrib/sglite/sghall.c pymol-1.7.1.1/contrib/sglite/sghkl.c pymol-1.7.1.1/contrib/sglite/sglite.h pymol-1.7.1.1/contrib/sglite/sglitemodule.c pymol-1.7.1.1/contrib/sglite/sglitemodule.def pymol-1.7.1.1/contrib/sglite/sgltr.c pymol-1.7.1.1/contrib/sglite/sgmath.c pymol-1.7.1.1/contrib/sglite/sgmetric.c pymol-1.7.1.1/contrib/sglite/sgnorm.c pymol-1.7.1.1/contrib/sglite/sgprop.c pymol-1.7.1.1/contrib/sglite/sgrefset.h pymol-1.7.1.1/contrib/sglite/sgss.c pymol-1.7.1.1/contrib/sglite/sgstr.c pymol-1.7.1.1/contrib/sglite/sgsymbols.c pymol-1.7.1.1/contrib/sglite/sgtidy.c pymol-1.7.1.1/contrib/sglite/sgtype.c pymol-1.7.1.1/contrib/sglite/sgutil.c pymol-1.7.1.1/contrib/uiuc/ pymol-1.7.1.1/contrib/uiuc/plugins/ pymol-1.7.1.1/contrib/uiuc/plugins/include/ pymol-1.7.1.1/contrib/uiuc/plugins/include/import_graphics_plugin.h pymol-1.7.1.1/contrib/uiuc/plugins/include/molfile_plugin.h pymol-1.7.1.1/contrib/uiuc/plugins/include/vmdconio.h pymol-1.7.1.1/contrib/uiuc/plugins/include/vmdplugin.h pymol-1.7.1.1/contrib/uiuc/plugins/LICENSE pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/ pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/LICENSE pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/ pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/corplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/fastio.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/fortread.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/hash.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/hash.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/inthash.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/largefiles.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/objects.make pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/unit_conversion.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/vmddir.h pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c pymol-1.7.1.1/contrib/uiuc/plugins/molfile_plugin/update.py pymol-1.7.1.1/contrib/uiuc/README pymol-1.7.1.1/COPYING pymol-1.7.1.1/create_shadertext.py pymol-1.7.1.1/data/ pymol-1.7.1.1/data/chempy/ pymol-1.7.1.1/data/chempy/fragments/ pymol-1.7.1.1/data/chempy/fragments/ace.pkl pymol-1.7.1.1/data/chempy/fragments/acetylene.pkl pymol-1.7.1.1/data/chempy/fragments/ala.pkl pymol-1.7.1.1/data/chempy/fragments/arg.pkl pymol-1.7.1.1/data/chempy/fragments/argn.pkl pymol-1.7.1.1/data/chempy/fragments/asn.pkl pymol-1.7.1.1/data/chempy/fragments/asp.pkl pymol-1.7.1.1/data/chempy/fragments/asph.pkl pymol-1.7.1.1/data/chempy/fragments/benzene.pkl pymol-1.7.1.1/data/chempy/fragments/benzocycloheptane.pkl pymol-1.7.1.1/data/chempy/fragments/butane.pkl pymol-1.7.1.1/data/chempy/fragments/ct_ala.pkl pymol-1.7.1.1/data/chempy/fragments/ct_arg.pkl pymol-1.7.1.1/data/chempy/fragments/ct_argn.pkl pymol-1.7.1.1/data/chempy/fragments/ct_asn.pkl pymol-1.7.1.1/data/chempy/fragments/ct_asp.pkl pymol-1.7.1.1/data/chempy/fragments/ct_asph.pkl pymol-1.7.1.1/data/chempy/fragments/ct_cys.pkl pymol-1.7.1.1/data/chempy/fragments/ct_gln.pkl pymol-1.7.1.1/data/chempy/fragments/ct_glu.pkl pymol-1.7.1.1/data/chempy/fragments/ct_gluh.pkl pymol-1.7.1.1/data/chempy/fragments/ct_gly.pkl 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pymol-1.7.1.1/data/chempy/fragments/trifluoromethane.pkl pymol-1.7.1.1/data/chempy/fragments/trp.pkl pymol-1.7.1.1/data/chempy/fragments/tyr.pkl pymol-1.7.1.1/data/chempy/fragments/val.pkl pymol-1.7.1.1/data/chempy/sidechains/ pymol-1.7.1.1/data/chempy/sidechains/generate1.py pymol-1.7.1.1/data/chempy/sidechains/generate2.py pymol-1.7.1.1/data/chempy/sidechains/sc_bb_dep.pkl pymol-1.7.1.1/data/chempy/sidechains/sc_bb_dep.py pymol-1.7.1.1/data/chempy/sidechains/sc_bb_ind.pkl pymol-1.7.1.1/data/chempy/sidechains/sc_bb_ind.py pymol-1.7.1.1/data/chempy/sidechains/sc_library.pkl pymol-1.7.1.1/data/chempy/tinker/ pymol-1.7.1.1/data/chempy/tinker/chempy.prm pymol-1.7.1.1/data/chempy/tinker/make99_simple.py pymol-1.7.1.1/data/chempy/tinker/make_simple.py pymol-1.7.1.1/data/chempy/tinker/Makefile.delsci pymol-1.7.1.1/data/chempy/tinker/parm94.dat pymol-1.7.1.1/data/chempy/tinker/parm94_rsm.dat pymol-1.7.1.1/data/chempy/tinker/parm96.dat pymol-1.7.1.1/data/chempy/tinker/parm96_rsm.dat 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pymol-1.7.1.1/data/shaders/screen.fs pymol-1.7.1.1/data/shaders/screen.vs pymol-1.7.1.1/data/shaders/shadertext.txt pymol-1.7.1.1/data/shaders/sphere.fs pymol-1.7.1.1/data/shaders/sphere.vs pymol-1.7.1.1/data/shaders/sphere_arb_fs.fs pymol-1.7.1.1/data/shaders/sphere_arb_vs.vs pymol-1.7.1.1/data/shaders/spheredirect.vs pymol-1.7.1.1/data/shaders/volume.fs pymol-1.7.1.1/data/shaders/volume.vs pymol-1.7.1.1/data/tut/ pymol-1.7.1.1/data/tut/1hpv.pdb pymol-1.7.1.1/data/xray/ pymol-1.7.1.1/data/xray/atomformfactor2.dat pymol-1.7.1.1/data/xray/atomformfactor5.dat pymol-1.7.1.1/data/xray/spgbase.dat pymol-1.7.1.1/DEVELOPERS pymol-1.7.1.1/examples/ pymol-1.7.1.1/examples/chempy/ pymol-1.7.1.1/examples/chempy/generate_amber.py pymol-1.7.1.1/examples/chempy/generate_mmff.py pymol-1.7.1.1/examples/cookbook/ pymol-1.7.1.1/examples/cookbook/area_diff.pml pymol-1.7.1.1/examples/cookbook/build_peptide.py pymol-1.7.1.1/examples/cookbook/contact.pml pymol-1.7.1.1/examples/cookbook/dali.py pymol-1.7.1.1/examples/cookbook/density.pml pymol-1.7.1.1/examples/cookbook/groel_es.pml pymol-1.7.1.1/examples/cookbook/multiclip_ray.pml pymol-1.7.1.1/examples/cookbook/packing.pml pymol-1.7.1.1/examples/cookbook/packsurf.pml pymol-1.7.1.1/examples/cookbook/ref_frame.pml pymol-1.7.1.1/examples/cookbook/ribosome.pml pymol-1.7.1.1/examples/cookbook/scenes2movie.pml pymol-1.7.1.1/examples/cookbook/seq_match_sele.pml pymol-1.7.1.1/examples/cookbook/ss_xfer.pml pymol-1.7.1.1/examples/cookbook/symsph.py pymol-1.7.1.1/examples/devel/ pymol-1.7.1.1/examples/devel/brick01.py pymol-1.7.1.1/examples/devel/cam2crd.pym pymol-1.7.1.1/examples/devel/cgo01.py pymol-1.7.1.1/examples/devel/cgo02.py pymol-1.7.1.1/examples/devel/cgo03.py pymol-1.7.1.1/examples/devel/cgo04.py pymol-1.7.1.1/examples/devel/cgo05.py pymol-1.7.1.1/examples/devel/cgo06.py pymol-1.7.1.1/examples/devel/cgo07.py pymol-1.7.1.1/examples/devel/cgo08.py pymol-1.7.1.1/examples/devel/cgo_3Dtext01.py 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pynmr_0.37f_src/pmg_tk/startup/pynmr/help/superimpose pynmr_0.37f_src/pmg_tk/startup/pynmr/images/ pynmr_0.37f_src/pmg_tk/startup/pynmr/images/lab2003_sm.GIF pynmr_0.37f_src/pmg_tk/startup/pynmr/images/logoCrefsip.GIF pynmr_0.37f_src/pmg_tk/startup/pynmr/LICENSE pynmr_0.37f_src/pmg_tk/startup/pynmr/loadnmr.py pynmr_0.37f_src/pmg_tk/startup/pynmr/ltorsions.py pynmr_0.37f_src/pmg_tk/startup/pynmr/nmr_cmd.py pynmr_0.37f_src/pmg_tk/startup/pynmr/noe.py pynmr_0.37f_src/pmg_tk/startup/pynmr/pbar.py pynmr_0.37f_src/pmg_tk/startup/pynmr/pynmr.py pynmr_0.37f_src/pmg_tk/startup/pynmr/README pynmr_0.37f_src/pmg_tk/startup/pynmr/rmsd.py pynmr_0.37f_src/pmg_tk/startup/pynmr/run pynmr_0.37f_src/pmg_tk/startup/pynmr/run.macos pynmr_0.37f_src/pmg_tk/startup/pynmr/run.py pynmr_0.37f_src/pmg_tk/startup/pynmr/srun.py pynmr_0.37f_src/pmg_tk/startup/pynmr/superimp.py pynmr_0.37f_src/pmg_tk/startup/pynmr/SVDSuperimposer.py pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/ pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/.noe.tbl.swp pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/dihedral.tbl pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/file.nam pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/noe.tbl pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/README pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/test.script pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/test_1.pdb pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/test_2.pdb pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/test_3.pdb pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/test_4.pdb pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/test_5.pdb pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/test_6.pdb pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/test_7.pdb pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/test_8.pdb pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/test_9.pdb pynmr_0.37f_src/pmg_tk/startup/pynmr/verify.py pynmr_0.37f_src/pmg_tk/startup/pynmr/verify_common.py pynmr_0.37f_src/README.txt pynmr_0.37f_src/setup.py sudo -u fink-bld [ENV] sh -c /tmp/fink.KHU7F [ -r /sw/fink/dists/stable/main/finkinfo/sci/pymol-py.patch ] sudo -u fink-bld [ENV] sh -c /tmp/fink.eUOQu [ -r /sw/fink/dists/stable/main/finkinfo/sci/pymol-py-clang.patch ] sudo -u fink-bld [ENV] sh -c /tmp/fink.iUtJ_ [ -r /sw/fink/dists/stable/main/finkinfo/sci/pymol-py-rest.patch ] sudo -u fink-bld [ENV] sh -c /tmp/fink.KsQcJ [ -r /sw/fink/dists/stable/main/finkinfo/sci/pymol-py-apbstools.patch ] sudo -u fink-bld [ENV] sh -c /tmp/fink.jEMXz /tmp/fink.Tq6Et + sed 's|@FINKPREFIX@|/sw|g' + sed 's|python2.X|python2.7|g' + patch -p1 patching file modules/pmg_tk/PMGApp.py Hunk #1 succeeded at 203 (offset 23 lines). Hunk #2 succeeded at 221 (offset 23 lines). patching file modules/pmg_tk/skins/normal/__init__.py Hunk #1 succeeded at 259 (offset 22 lines). Hunk #2 succeeded at 278 (offset 22 lines). Hunk #3 succeeded at 305 (offset 22 lines). patching file modules/pmg_tk/startup/apbs_tools.py patching file modules/pymol/__init__.py Hunk #1 succeeded at 143 (offset 1 line). patching file pymol.cmd patching file setup.py + patch -p1 patching file contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp patching file contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c patching file contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp patching file contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp patching file contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c patching file contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp patching file contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c patching file layer0/Map.c patching file layer0/ShaderMgr.c Hunk #1 succeeded at 151 (offset 1 line). Hunk #2 succeeded at 499 (offset 7 lines). Hunk #3 succeeded at 538 (offset 24 lines). Hunk #4 succeeded at 873 (offset 27 lines). patching file layer1/Basis.c patching file layer1/CGO.c Hunk #2 succeeded at 2310 (offset 27 lines). Hunk #3 succeeded at 4368 (offset 27 lines). Hunk #4 succeeded at 7135 (offset 28 lines). Hunk #5 succeeded at 7176 (offset 28 lines). Hunk #6 succeeded at 9564 (offset 30 lines). patching file layer1/Control.c patching file layer1/Extrude.c patching file layer1/Ortho.c patching file layer1/P.c Hunk #1 succeeded at 1464 (offset 20 lines). Hunk #2 succeeded at 1478 (offset 20 lines). Hunk #3 succeeded at 1529 (offset 20 lines). Hunk #4 succeeded at 1541 (offset 20 lines). Hunk #5 succeeded at 1559 (offset 20 lines). Hunk #6 succeeded at 2632 (offset 20 lines). Hunk #7 succeeded at 2676 (offset 20 lines). Hunk #8 succeeded at 2688 (offset 20 lines). Hunk #9 succeeded at 2784 (offset 20 lines). Hunk #10 succeeded at 2793 (offset 20 lines). Hunk #11 succeeded at 2814 (offset 20 lines). patching file layer1/Scene.c Hunk #1 succeeded at 7623 (offset -14 lines). patching file layer2/ObjectMolecule.c Hunk #4 succeeded at 9767 (offset -1 lines). Hunk #5 succeeded at 10551 (offset -1 lines). patching file layer2/ObjectMolecule2.c patching file layer2/RepCartoon.c patching file layer2/RepDot.c patching file layer2/RepSphere.c patching file layer2/RepSurface.c patching file layer3/Executive.c Hunk #1 succeeded at 15928 (offset 6 lines). patching file layer3/PlugIOManager.c patching file layer3/Selector.c Hunk #1 succeeded at 8658 (offset -2 lines). patching file layer4/Cmd.c Hunk #5 succeeded at 1853 (offset 7 lines). patching file modules/cealign/src/tnt/tnt_array1d.h patching file modules/cealign/src/tnt/tnt_fortran_array1d.h + cd .. + sed 's|@FINKPREFIX@|/sw|g' + sed 's|python2.X|python2.7|g' + sed 's|pymol-py2X|pymol-py27|g' + patch -p1 patching file eMovie.py patching file pynmr_0.37f_src/pmg_tk/startup/pynmr/Crmsd.i patching file pynmr_0.37f_src/pmg_tk/startup/pynmr/run.macos patching file pynmr_0.37f_src/pmg_tk/startup/pynmr/test_data/test.script + cd pymol-1.7.1.1 + perl -pi -e 's|self.dialog.activate|\#self.dialog.activate|g' modules/pmg_tk/startup/apbs_tools.py + perl -pi -e s/lglew/lGLEW/g setup.py + perl -pi -e 's|searchDirs.append\(os.path.join\("/opt", "local", "bin"\)\)||g' modules/pmg_tk/startup/apbs_tools.py ++ sw_vers -productVersion ++ cut -d. -f1-2 + [[ 10.9 > 10.8 ]] + patch -p1 patching file modules/pmg_tk/startup/apbs_tools.py Hunk #12 succeeded at 2284 (offset 4 lines). Hunk #13 succeeded at 2335 (offset 4 lines). Hunk #14 succeeded at 2352 (offset 4 lines). Hunk #15 succeeded at 2372 (offset 4 lines). Hunk #16 succeeded at 2394 (offset 4 lines). + perl -pi -e 's|from numpy.oldnumeric import ArrayType|from numpy import array|g' modules/pymol/opengl/glu/__init__.py modules/pymol/opengl/gl/__init__.py + perl -pi -e 's|import numpy.oldnumeric as multiarray|import numpy.core.multiarray as multiarray|g' modules/pymol/opengl/__init__.py sudo -u fink-bld [ENV] sh -c /tmp/fink.JLSPt /tmp/fink.JrHoT + '[' 2.7 == 2.6 ']' /bin/rm -rf /sw/build.build/root-pymol-py27-1.7.1.1-1 /bin/mkdir -p /sw/build.build/root-pymol-py27-1.7.1.1-1/sw /bin/mkdir -p /sw/build.build/root-pymol-py27-1.7.1.1-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-pymol-py27-1.7.1.1-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.gjTg2 /tmp/fink.oI0Hy + /sw/bin/python2.7 setup.py install --root /sw/build.build/root-pymol-py27-1.7.1.1-1 fatal: Not a git repository (or any of the parent directories): .git svn: E155007: '/sw/build.build/pymol-py27-1.7.1.1-1/pymol-1.7.1.1' is not a working copy running install running build running build_py creating build/lib.macosx-10.9-x86_64-2.7 creating build/lib.macosx-10.9-x86_64-2.7/pymol creating build/lib.macosx-10.9-x86_64-2.7/pymol/embed creating build/lib.macosx-10.9-x86_64-2.7/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/embed/epymol creating build/lib.macosx-10.9-x86_64-2.7/chempy creating build/lib.macosx-10.9-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/amber.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/keyword.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/realtime.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/state.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/tinker creating build/lib.macosx-10.9-x86_64-2.7/pmg_tk creating build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins creating build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/demo creating build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup creating build/lib.macosx-10.9-x86_64-2.7/pymol/opengl creating build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glu creating build/lib.macosx-10.9-x86_64-2.7/pmg_wx copying modules/pmg_wx/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_wx creating build/lib.macosx-10.9-x86_64-2.7/chempy/fast copying modules/chempy/fast/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/fast creating build/lib.macosx-10.9-x86_64-2.7/chempy/fragments copying modules/chempy/fragments/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/fragments copying modules/pmg_tk/skins/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins creating build/lib.macosx-10.9-x86_64-2.7/web copying modules/web/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/web copying modules/web/pymolhttpd.py -> build/lib.macosx-10.9-x86_64-2.7/web copying modules/pymol/embed/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/embed creating build/lib.macosx-10.9-x86_64-2.7/pymol/contrib copying modules/pymol/contrib/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/contrib creating build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glut creating build/lib.macosx-10.9-x86_64-2.7/pymol2 copying modules/pymol2/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol2 copying modules/pymol2/cmd2.py -> build/lib.macosx-10.9-x86_64-2.7/pymol2 copying modules/pymol2/make_cmd2.py -> build/lib.macosx-10.9-x86_64-2.7/pymol2 creating build/lib.macosx-10.9-x86_64-2.7/web/examples copying modules/web/examples/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/web/examples copying modules/web/examples/justhttpd.py -> build/lib.macosx-10.9-x86_64-2.7/web/examples copying modules/pmg_tk/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk copying modules/pmg_tk/ColorEditor.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk copying modules/pmg_tk/Demo.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk copying modules/pmg_tk/PMGApp.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk copying modules/pmg_tk/SetEditor.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk copying modules/pmg_tk/Setting.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk copying modules/pmg_tk/TextEditor.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk copying modules/pmg_tk/volume.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk creating build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal creating build/lib.macosx-10.9-x86_64-2.7/chempy/champ copying modules/chempy/champ/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/champ copying modules/chempy/champ/amber99.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/champ copying modules/chempy/champ/assign.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/champ copying modules/chempy/champ/formal_charges.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/champ creating build/lib.macosx-10.9-x86_64-2.7/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/embed/wxpymol creating build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/annotation.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/appearance.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/benchmark.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/box.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/charge.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/cleanup.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/demo.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/density.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/distance.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/dragging.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/fedora.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/filter.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/label.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/measurement.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/message.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/renaming.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/sculpting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/security.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/toggle.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard creating build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/gl copying modules/pymol/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/api.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/callback.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/cgo.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/checking.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/cmd.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/colorramping.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/commanding.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/completing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/computing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/constants.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/constants_palette.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/controlling.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/creating.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/editing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/editor.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/experimenting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/exporting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/externing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/feedingback.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/fitting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/gui.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/headering.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/helping.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/importing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/internal.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/invocation.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/keyboard.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/keywords.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/locking.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/m4x.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/menu.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/monitoring.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/movie.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/moving.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/parser.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/parsing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/povray.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/preset.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/querying.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/rpc.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/selecting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/selector.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/setting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/shortcut.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/util.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/vfont.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/viewing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/wizarding.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/xray.py -> build/lib.macosx-10.9-x86_64-2.7/pymol copying modules/pymol/xwin.py -> build/lib.macosx-10.9-x86_64-2.7/pymol creating build/lib.macosx-10.9-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/commands.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/realtime.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/state.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/util.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/bmin copying modules/chempy/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/arc.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/bond_amber.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/bond_mmff.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/bonds.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/brick.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/cc1.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/cex.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/charge.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/cif.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/cpv.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/dictdb.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/gamess1.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/gms.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/hetatm.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/io.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/lst.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/mae.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/map.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/mass.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/mmd.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/models.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/mol.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/mol2.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/neighbor.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/pdb.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/pkl.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/place.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/protein.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/protein_amber.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/protein_amber99.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/protein_mmff.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/protein_residues.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/sdf.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/solvate.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/water_amber.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/water_residues.py -> build/lib.macosx-10.9-x86_64-2.7/chempy copying modules/chempy/xyz.py -> build/lib.macosx-10.9-x86_64-2.7/chempy creating build/lib.macosx-10.9-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/installation.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/managergui.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/repository.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/plugins copying modules/pymol/opengl/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/opengl running build_ext building 'pymol._cmd' extension creating build/temp.macosx-10.9-x86_64-2.7 creating build/temp.macosx-10.9-x86_64-2.7/ov creating build/temp.macosx-10.9-x86_64-2.7/ov/src creating build/temp.macosx-10.9-x86_64-2.7/layer0 creating build/temp.macosx-10.9-x86_64-2.7/layer1 creating build/temp.macosx-10.9-x86_64-2.7/layer2 creating build/temp.macosx-10.9-x86_64-2.7/layer3 creating build/temp.macosx-10.9-x86_64-2.7/layer4 creating build/temp.macosx-10.9-x86_64-2.7/layer5 creating build/temp.macosx-10.9-x86_64-2.7/modules creating build/temp.macosx-10.9-x86_64-2.7/modules/cealign creating build/temp.macosx-10.9-x86_64-2.7/modules/cealign/src creating build/temp.macosx-10.9-x86_64-2.7/build creating build/temp.macosx-10.9-x86_64-2.7/build/generated creating build/temp.macosx-10.9-x86_64-2.7/contrib creating build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc creating build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins creating build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c ov/src/ov_utility.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/ov_utility.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c ov/src/OVOneToOne.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVOneToOne.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Matrix.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Matrix.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Err.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Err.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Pixmap.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Pixmap.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Texture.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Texture.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Basis.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Basis.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Extrude.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Extrude.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/ButMode.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/ButMode.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c ov/src/OVContext.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVContext.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Queue.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Queue.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c ov/src/OVRandom.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVRandom.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c ov/src/OVHeap.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVHeap.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Block.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Block.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Raw.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Raw.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c ov/src/OVHeapArray.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVHeapArray.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c ov/src/OVLexicon.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVLexicon.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/ShaderMgr.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/ShaderMgr.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c ov/src/OVOneToAny.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVOneToAny.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/FontGLUTHel12.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUTHel12.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Feedback.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Feedback.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Crystal.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Crystal.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/FontGLUTHel18.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUTHel18.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Field.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Field.o -ffast-math -funroll-loops -O3 -fcommon layer0/ShaderMgr.c:521:11: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (err = glGetError()){ ~~~~^~~~~~~~~~~~~~ layer0/ShaderMgr.c:521:11: note: place parentheses around the assignment to silence this warning if (err = glGetError()){ ^ ( ) layer0/ShaderMgr.c:521:11: note: use '==' to turn this assignment into an equality comparison if (err = glGetError()){ ^ == layer0/ShaderMgr.c:528:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (err = glGetError()){ ~~~~^~~~~~~~~~~~~~ layer0/ShaderMgr.c:528:13: note: place parentheses around the assignment to silence this warning if (err = glGetError()){ ^ ( ) layer0/ShaderMgr.c:528:13: note: use '==' to turn this assignment into an equality comparison if (err = glGetError()){ ^ == layer0/ShaderMgr.c:827:14: warning: unused variable 'err' [-Wunused-variable] GLenum err ; ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/FontType.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontType.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/CGO.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/CGO.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Tracker.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Tracker.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Isosurf.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Isosurf.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Debug.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Debug.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Deferred.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Deferred.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Triangle.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Triangle.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/PConv.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/PConv.o -ffast-math -funroll-loops -O3 -fcommon layer1/CGO.c:1881:6: warning: unused variable 'ncolors' [-Wunused-variable] int ncolors = 0; ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Movie.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Movie.o -ffast-math -funroll-loops -O3 -fcommon layer0/Isosurf.c:2211:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Font.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Font.o -ffast-math -funroll-loops -O3 -fcommon 3 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Sphere.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Sphere.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Pop.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Pop.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/FontGLUT.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUT.o -ffast-math -funroll-loops -O3 -fcommon layer0/Sphere.c:34:20: warning: unused variable 'start_points' [-Wunused-const-variable] static const float start_points[13][3] = { ^ layer0/Sphere.c:49:18: warning: unused variable 'icosahedron' [-Wunused-const-variable] static const int icosahedron[21][3] = { ^ 2 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Tetsurf.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Tetsurf.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/PyMOLObject.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/PyMOLObject.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/MemoryCache.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/MemoryCache.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/MemoryDebug.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/MemoryDebug.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/FontGLUT8x13.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUT8x13.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/FontGLUT9x15.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUT9x15.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Ortho.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Ortho.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/MyPNG.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/MyPNG.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/FontGLUTHel10.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUTHel10.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/ScrollBar.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/ScrollBar.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/os_gl.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/os_gl.o -ffast-math -funroll-loops -O3 -fcommon 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Map.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Map.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Ray.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Ray.o -ffast-math -funroll-loops -O3 -fcommon layer0/os_gl.c:99:59: warning: 'gluErrorString' is deprecated: first deprecated in OS X 10.9 [-Wdeprecated-declarations] printf("OpenGL-Error: Where? %s: %s\n", pos, (char *) gluErrorString(glerr)); ^ /System/Library/Frameworks/OpenGL.framework/Headers/glu.h:260:24: note: 'gluErrorString' declared here extern const GLubyte * gluErrorString (GLenum error) OPENGL_DEPRECATED(10_0, 10_9); ^ 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Parse.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Parse.o -ffast-math -funroll-loops -O3 -fcommon layer0/Parse.c:173:10: warning: array subscript is of type 'char' [-Wchar-subscripts] buf[blen] = 0; ^~~~~ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Seq.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Seq.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Util.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Util.o -ffast-math -funroll-loops -O3 -fcommon 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/TypeFace.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/TypeFace.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/GadgetSet.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/GadgetSet.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Vector.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Vector.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Match.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Match.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/ObjectAlignment.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectAlignment.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/View.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/View.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/P.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/P.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Setting.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Setting.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/ObjectGadgetRamp.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectGadgetRamp.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer0/Word.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Word.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/ObjectGroup.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectGroup.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Wizard.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Wizard.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/ObjectSlice.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectSlice.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/ObjectCallback.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectCallback.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/ObjectMap.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMap.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepDihedral.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDihedral.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/ObjectCGO.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectCGO.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/AtomInfo.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/AtomInfo.o -ffast-math -funroll-loops -O3 -fcommon In file included from layer2/ObjectMap.c:42: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761: /sw/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ layer2/ObjectMap.c:2684:5: warning: implicit declaration of function 'UtilNCopy' is invalid in C99 [-Wimplicit-function-declaration] UtilNCopy(ms->Symmetry->SpaceGroup, space_group_numbers[ispg], WordLength); ^ In file included from layer2/ObjectMap.c:42: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26: /sw/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: unused function '_import_array' [-Wunused-function] _import_array(void) ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepDistDash.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDistDash.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/ObjectDist.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectDist.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Shaker.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Shaker.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/ObjectSurface.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectSurface.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Symmetry.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Symmetry.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepDistLabel.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDistLabel.o -ffast-math -funroll-loops -O3 -fcommon 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Character.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Character.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/ObjectGadget.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectGadget.o -ffast-math -funroll-loops -O3 -fcommon layer1/Character.c:267:18: warning: unused variable 'vertexVals' [-Wunused-variable] const GLfloat vertexVals [] = { ^ layer1/Character.c:273:18: warning: unused variable 'texVals' [-Wunused-variable] const GLfloat texVals [] = { ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Text.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Text.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/CoordSet.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/CoordSet.o -ffast-math -funroll-loops -O3 -fcommon 2 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Color.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Color.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/ObjectVolume.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectVolume.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepDot.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDot.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepMesh.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepMesh.o -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectVolume.c:73:19: warning: unused variable 'oms' [-Wunused-variable] ObjectMapState *oms = NULL; ^ layer2/ObjectVolume.c:471:9: warning: '&&' within '||' [-Wlogical-op-parentheses] && vs->Ramp[5 * (vs->RampSize - 1)] == 359.f) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectVolume.c:471:9: note: place parentheses around the '&&' expression to silence this warning && vs->Ramp[5 * (vs->RampSize - 1)] == 359.f) { ^ layer2/ObjectVolume.c:452:51: warning: expression result unused [-Wunused-value] a, vs->RefreshFlag, vs->ResurfaceFlag ENDFD(G); ^ layer2/ObjectVolume.c:435:14: warning: unused variable 'map' [-Wunused-variable] ObjectMap *map = NULL; ^ layer2/ObjectVolume.c:695:10: warning: unused variable 'j' [-Wunused-variable] int i, j, ci[] = { ^ layer2/ObjectVolume.c:891:89: warning: '&&' within '||' [-Wlogical-op-parentheses] CShaderPrg_Set1f(shaderPrg, "fogIsSolidColor", bg_gradient || bg_image_filename && bg_image_filename[0] ? 0.f : 1.f); ~~ ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectVolume.c:891:89: note: place parentheses around the '&&' expression to silence this warning CShaderPrg_Set1f(shaderPrg, "fogIsSolidColor", bg_gradient || bg_image_filename && bg_image_filename[0] ? 0.f : 1.f); ^ ( ) layer2/ObjectVolume.c:726:8: warning: unused variable 'n' [-Wunused-variable] int *n = NULL; ^ layer2/ObjectVolume.c:1330:9: warning: unused variable 'min_val' [-Wunused-variable] float min_val, max_val; ^ layer2/ObjectVolume.c:1330:18: warning: unused variable 'max_val' [-Wunused-variable] float min_val, max_val; ^ layer1/Color.c:3069:16: warning: unused variable 'result' [-Wunused-variable] unsigned int result; ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepEllipsoid.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepEllipsoid.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/DistSet.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/DistSet.o -ffast-math -funroll-loops -O3 -fcommon 9 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepAngle.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepAngle.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepLabel.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepLabel.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepNonbonded.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepNonbonded.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Rep.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Rep.o -ffast-math -funroll-loops -O3 -fcommon 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Control.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Control.o -ffast-math -funroll-loops -O3 -fcommon 3 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/ObjectMesh.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMesh.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer1/Scene.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Scene.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepWireBond.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepWireBond.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer3/PlugIOManager.c -o build/temp.macosx-10.9-x86_64-2.7/layer3/PlugIOManager.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepCartoon.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepCartoon.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepNonbondedSphere.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepNonbondedSphere.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer4/PopUp.c -o build/temp.macosx-10.9-x86_64-2.7/layer4/PopUp.o -ffast-math -funroll-loops -O3 -fcommon layer1/Scene.c:9193:7: warning: 'gluPerspective' is deprecated: first deprecated in OS X 10.9 - "Use GLKMatrix4MakePerspective" [-Wdeprecated-declarations] gluPerspective(fov, aspRat, I->FrontSafe, I->BackSafe); ^ /System/Library/Frameworks/OpenGL.framework/Headers/glu.h:278:13: note: 'gluPerspective' declared here extern void gluPerspective (GLdouble fovy, GLdouble aspect, GLdouble zNear, GLdouble zFar) OPENGL_DEPRECATED_MSG(10_0, 10_9, "Use GLKMatrix4MakePerspective"); ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/ObjectMolecule.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMolecule.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer3/Seeker.c -o build/temp.macosx-10.9-x86_64-2.7/layer3/Seeker.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepRibbon.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepRibbon.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer5/main.c -o build/temp.macosx-10.9-x86_64-2.7/layer5/main.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/Sculpt.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/Sculpt.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer5/PyMOL.c -o build/temp.macosx-10.9-x86_64-2.7/layer5/PyMOL.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepSphere.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepSphere.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer3/Selector.c -o build/temp.macosx-10.9-x86_64-2.7/layer3/Selector.o -ffast-math -funroll-loops -O3 -fcommon layer5/PyMOL.c:959:37: warning: unused function 'return_status' [-Wunused-function] CC_INLINE static PyMOLreturn_status return_status(int status) ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepSurface.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepSurface.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/SculptCache.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/SculptCache.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/VFont.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/VFont.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/RepCylBond.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepCylBond.o -ffast-math -funroll-loops -O3 -fcommon layer2/RepSurface.c:4281:31: warning: unused function 'SurfaceJobAtomInfoVLAFromPyTuple' [-Wunused-function] OV_INLINE SurfaceJobAtomInfo *SurfaceJobAtomInfoVLAFromPyTuple(PyObject * tuple) ^ 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer3/Editor.c -o build/temp.macosx-10.9-x86_64-2.7/layer3/Editor.o -ffast-math -funroll-loops -O3 -fcommon layer2/RepCylBond.c:2361:13: warning: unused function 'subdivide' [-Wunused-function] static void subdivide(int n, float *x, float *y) ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:43: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:706:12: warning: unused function 'symmetry_expand' [-Wunused-function] static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms, ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:830:13: warning: unused function 'eatline' [-Wunused-function] static void eatline(FILE * fd, int n) ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:841:13: warning: unused function 'eatwhitelines' [-Wunused-function] static void eatwhitelines(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:890:12: warning: unused function 'iswhiteline' [-Wunused-function] static int iswhiteline(char *s) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:896:14: warning: unused function 'strtoupper' [-Wunused-function] static char *strtoupper(char *s) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:957:12: warning: unused function 'goto_keyline' [-Wunused-function] static int goto_keyline(FILE *file, ...) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1001:12: warning: unused function 'have_keyline' [-Wunused-function] static int have_keyline(FILE *file, const char *keystring1, ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: unused function 'thisline' [-Wunused-function] static void thisline(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: unused function 'whereami' [-Wunused-function] static void whereami(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:433:18: warning: unused function 'init_qmdata' [-Wunused-function] static qmdata_t* init_qmdata(qmdata_t *data) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:466:27: warning: unused function 'add_wavefunction' [-Wunused-function] static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:485:13: warning: unused function 'replace_wavefunction' [-Wunused-function] static void replace_wavefunction(qm_timestep_t *ts, int n) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:502:13: warning: unused function 'del_wavefunction' [-Wunused-function] static void del_wavefunction(qm_timestep_t *ts) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:535:13: warning: unused function 'angular_momentum_expon' [-Wunused-function] static void angular_momentum_expon(int *ang_mom_expon, ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: unused function 'print_matrix4' [-Wunused-function] static void print_matrix4(const float mat[16]) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1023:12: warning: unused function 'fpexpftoc' [-Wunused-function] static int fpexpftoc(char *ftocstr) { ^ 16 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer3/Executive.c -o build/temp.macosx-10.9-x86_64-2.7/layer3/Executive.o -ffast-math -funroll-loops -O3 -fcommon 1 warning generated. 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer5/TestPyMOL.c -o build/temp.macosx-10.9-x86_64-2.7/layer5/TestPyMOL.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:468:12: warning: unused function 'fio_read_int32' [-Wunused-function] static int fio_read_int32(fio_fd fd, int *i) { ^ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:472:12: warning: unused function 'fio_write_str' [-Wunused-function] static int fio_write_str(fio_fd fd, const char *str) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -ffast-math -funroll-loops -O3 -fcommon 4 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.macosx-10.9-x86_64-2.7/modules/cealign/src/ccealignmodule.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:33: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: unused function 'get_pte_idx' [-Wunused-function] static int get_pte_idx(const char *label) ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:890:12: warning: unused function 'iswhiteline' [-Wunused-function] static int iswhiteline(char *s) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:896:14: warning: unused function 'strtoupper' [-Wunused-function] static char *strtoupper(char *s) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: unused function 'thisline' [-Wunused-function] static void thisline(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: unused function 'whereami' [-Wunused-function] static void whereami(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: unused function 'print_matrix4' [-Wunused-function] static void print_matrix4(const float mat[16]) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1023:12: warning: unused function 'fpexpftoc' [-Wunused-function] static int fpexpftoc(char *ftocstr) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: unused function 'get_pte_label' [-Wunused-function] static const char *get_pte_label(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: unused function 'get_pte_mass' [-Wunused-function] static float get_pte_mass(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: unused function 'get_pte_vdw_radius' [-Wunused-function] static float get_pte_vdw_radius(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: unused function 'get_pte_idx' [-Wunused-function] static int get_pte_idx(const char *label) ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:997:13: warning: unused function 'print_input_data' [-Wunused-function] static void print_input_data(qmdata_t *data) { ^ layer3/Executive.c:4495:50: warning: data argument not used by format string [-Wformat-extra-args] " GetHistogram-Error: wrong object type.", objName ENDFB(G); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.c:5898:19: warning: incompatible pointer to integer conversion assigning to 'int' from 'CSymmetry *' [-Wint-conversion] ok_assert(1, ok = symmetry); ^ ~~~~~~~~ layer0/Err.h:32:31: note: expanded from macro 'ok_assert' #define ok_assert(x, c) {if(!(c)) ok_raise(x);} ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:29: In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:29: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: unused function 'fort_eat_recmark' [-Wunused-function] static int fort_eat_recmark(FILE *ifp, int recmarklen) { ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: unused function 'fort_get_endian_reclen' [-Wunused-function] static int fort_get_endian_reclen(int reclen, int word0, int word1, ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: unused function 'fortread_4' [-Wunused-function] static int fortread_4(void *dest, int n, int swap, FILE *fd) { ^ 8 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -ffast-math -funroll-loops -O3 -fcommon 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:42: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: unused function 'vasp_timestep_unitcell' [-Wunused-function] static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) ^ 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from modules/cealign/src/ccealignmodule.cpp:32: In file included from modules/cealign/src/ccealignmodule.H:37: In file included from modules/cealign/src/tnt/tnt.h:43: modules/cealign/src/tnt/tnt_matrix.h:549:15: warning: unused variable 'N' [-Wunused-variable] Subscript N = A.num_cols(); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ 11 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -ffast-math -funroll-loops -O3 -fcommon 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:42: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: unused function 'vasp_timestep_unitcell' [-Wunused-function] static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -ffast-math -funroll-loops -O3 -fcommon 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -ffast-math -funroll-loops -O3 -fcommon 1 warning generated. contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:403:16: warning: unused variable 'bszmask' [-Wunused-variable] fio_size_t bszmask; ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:87: In file included from contrib/uiuc/plugins/molfile_plugin/src/hash.h:37: contrib/uiuc/plugins/molfile_plugin/src/hash.c:183:21: warning: unused function 'hash_delete' [-Wunused-function] VMDEXTERNSTATIC int hash_delete(hash_t *tptr, const char *key) { ^ contrib/uiuc/plugins/molfile_plugin/src/hash.c:270:24: warning: unused function 'hash_stats' [-Wunused-function] VMDEXTERNSTATIC char * hash_stats(hash_t *tptr) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:88: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -ffast-math -funroll-loops -O3 -fcommon 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:48: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -ffast-math -funroll-loops -O3 -fcommon 6 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -ffast-math -funroll-loops -O3 -fcommon 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:44: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:7: warning: unused variable 's_expon' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:21: warning: unused variable 's_coeff1' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:36: warning: unused variable 's_coeff2' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:37: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: unused function 'get_pte_label' [-Wunused-function] static const char *get_pte_label(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: unused function 'get_pte_mass' [-Wunused-function] static float get_pte_mass(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: unused function 'get_pte_vdw_radius' [-Wunused-function] static float get_pte_vdw_radius(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: unused function 'get_pte_idx' [-Wunused-function] static int get_pte_idx(const char *label) ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:38: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:706:12: warning: unused function 'symmetry_expand' [-Wunused-function] static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms, ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1001:12: warning: unused function 'have_keyline' [-Wunused-function] static int have_keyline(FILE *file, const char *keystring1, ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: unused function 'thisline' [-Wunused-function] static void thisline(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: unused function 'whereami' [-Wunused-function] static void whereami(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:485:13: warning: unused function 'replace_wavefunction' [-Wunused-function] static void replace_wavefunction(qm_timestep_t *ts, int n) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:502:13: warning: unused function 'del_wavefunction' [-Wunused-function] static void del_wavefunction(qm_timestep_t *ts) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: unused function 'print_matrix4' [-Wunused-function] static void print_matrix4(const float mat[16]) { ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer4/Cmd.c -o build/temp.macosx-10.9-x86_64-2.7/layer4/Cmd.o -ffast-math -funroll-loops -O3 -fcommon 5 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:47: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:48: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: unused function 'fort_eat_recmark' [-Wunused-function] static int fort_eat_recmark(FILE *ifp, int recmarklen) { ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: unused function 'fort_get_endian_reclen' [-Wunused-function] static int fort_get_endian_reclen(int reclen, int word0, int word1, ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: unused function 'strnwscpy' [-Wunused-function] static void strnwscpy(char *target, const char *source, const int len) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:42: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: unused function 'get_pte_idx' [-Wunused-function] static int get_pte_idx(const char *label) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ 8 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:40: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ 2 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -ffast-math -funroll-loops -O3 -fcommon 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c build/generated/ShaderText.c -o build/temp.macosx-10.9-x86_64-2.7/build/generated/ShaderText.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:63: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: unused function 'swap4_aligned' [-Wunused-function] static void swap4_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ 4 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -ffast-math -funroll-loops -O3 -fcommon 4 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -ffast-math -funroll-loops -O3 -fcommon layer4/Cmd.c:5985:29: warning: '&&' within '||' [-Wlogical-op-parentheses] if(ray || !G->HaveGUI && (!SceneGetCopyType(G) || width || height)) { ~~ ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer4/Cmd.c:5985:29: note: place parentheses around the '&&' expression to silence this warning if(ray || !G->HaveGUI && (!SceneGetCopyType(G) || width || height)) { ^ ( ) In file included from contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp:51: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -ffast-math -funroll-loops -O3 -fcommon 5 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -ffast-math -funroll-loops -O3 -fcommon 14 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer2/ObjectMolecule2.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMolecule2.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:59: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:60: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: unused function 'fort_eat_recmark' [-Wunused-function] static int fort_eat_recmark(FILE *ifp, int recmarklen) { ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: unused function 'fort_get_endian_reclen' [-Wunused-function] static int fort_get_endian_reclen(int reclen, int word0, int word1, ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: unused function 'strnwscpy' [-Wunused-function] static void strnwscpy(char *target, const char *source, const int len) { ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -ffast-math -funroll-loops -O3 -fcommon 8 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:135:7: warning: unused variable 'retval' [-Wunused-variable] int retval; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:45: In file included from contrib/uiuc/plugins/molfile_plugin/src/hash.h:37: contrib/uiuc/plugins/molfile_plugin/src/hash.c:183:21: warning: unused function 'hash_delete' [-Wunused-function] VMDEXTERNSTATIC int hash_delete(hash_t *tptr, const char *key) { ^ contrib/uiuc/plugins/molfile_plugin/src/hash.c:270:24: warning: unused function 'hash_stats' [-Wunused-function] VMDEXTERNSTATIC char * hash_stats(hash_t *tptr) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: In file included from contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:48: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ 3 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:85:14: warning: unused variable 'data' [-Wunused-variable] mmcifdata *data = (mmcifdata *)mydata; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:64: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: unused function 'get_pte_label' [-Wunused-function] static const char *get_pte_label(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: unused function 'get_pte_mass' [-Wunused-function] static float get_pte_mass(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: unused function 'get_pte_vdw_radius' [-Wunused-function] static float get_pte_vdw_radius(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: unused function 'get_pte_idx' [-Wunused-function] static int get_pte_idx(const char *label) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:98:14: warning: unused function 'open_mmcif_write' [-Wunused-function] static void *open_mmcif_write(const char *filename, const char *filetype, ^ 7 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:53: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -ffast-math -funroll-loops -O3 -fcommon 4 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:42: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ 5 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -ffast-math -funroll-loops -O3 -fcommon 4 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:680:44: warning: field 'eno' is uninitialized when used here [-Wuninitialized] : std::runtime_error(text + strerror(eno)), eno(_eno){} ^ contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:13: warning: unused variable 'z' [-Wunused-variable] int x, y, z, xsize, ysize, zsize, xysize, total; ^ contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:10: warning: unused variable 'y' [-Wunused-variable] int x, y, z, xsize, ysize, zsize, xysize, total; ^ contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:7: warning: unused variable 'x' [-Wunused-variable] int x, y, z, xsize, ysize, zsize, xysize, total; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:36: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ 8 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:47: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:70: contrib/uiuc/plugins/molfile_plugin/src/vmddir.h:137:12: warning: unused function 'vmd_file_is_executable' [-Wunused-function] static int vmd_file_is_executable(const char * filename) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: unused function 'swap4_aligned' [-Wunused-function] static void swap4_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ 4 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -ffast-math -funroll-loops -O3 -fcommon 2 warnings generated. contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1883:9: warning: unused variable 'last_ctnumber' [-Wunused-variable] int last_ctnumber = -1; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:37: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer4/Export.c -o build/temp.macosx-10.9-x86_64-2.7/layer4/Export.o -ffast-math -funroll-loops -O3 -fcommon 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c layer4/Menu.c -o build/temp.macosx-10.9-x86_64-2.7/layer4/Menu.o -ffast-math -funroll-loops -O3 -fcommon 6 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -ffast-math -funroll-loops -O3 -fcommon gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include -I/sw/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/sw/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:207:10: warning: unused variable 'l' [-Wunused-variable] int z, l, sentinel, convcnt; ^ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:220:7: warning: unused variable 'leftover' [-Wunused-variable] int leftover = (nperslice - (nlines - 1) * 6); ^ 2 warnings generated. 1 warning generated. g++ -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib -L/sw/lib -I/sw/include build/temp.macosx-10.9-x86_64-2.7/ov/src/ov_utility.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVContext.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVHeap.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVHeapArray.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVLexicon.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVOneToAny.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVOneToOne.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVRandom.o build/temp.macosx-10.9-x86_64-2.7/layer0/Block.o build/temp.macosx-10.9-x86_64-2.7/layer0/Crystal.o build/temp.macosx-10.9-x86_64-2.7/layer0/Debug.o build/temp.macosx-10.9-x86_64-2.7/layer0/Deferred.o build/temp.macosx-10.9-x86_64-2.7/layer0/Err.o build/temp.macosx-10.9-x86_64-2.7/layer0/Feedback.o build/temp.macosx-10.9-x86_64-2.7/layer0/Field.o build/temp.macosx-10.9-x86_64-2.7/layer0/Isosurf.o build/temp.macosx-10.9-x86_64-2.7/layer0/Map.o build/temp.macosx-10.9-x86_64-2.7/layer0/Match.o build/temp.macosx-10.9-x86_64-2.7/layer0/Matrix.o build/temp.macosx-10.9-x86_64-2.7/layer0/MemoryCache.o build/temp.macosx-10.9-x86_64-2.7/layer0/MemoryDebug.o build/temp.macosx-10.9-x86_64-2.7/layer0/MyPNG.o build/temp.macosx-10.9-x86_64-2.7/layer0/os_gl.o build/temp.macosx-10.9-x86_64-2.7/layer0/Parse.o build/temp.macosx-10.9-x86_64-2.7/layer0/Pixmap.o build/temp.macosx-10.9-x86_64-2.7/layer0/Queue.o build/temp.macosx-10.9-x86_64-2.7/layer0/Raw.o build/temp.macosx-10.9-x86_64-2.7/layer0/ShaderMgr.o build/temp.macosx-10.9-x86_64-2.7/layer0/Sphere.o build/temp.macosx-10.9-x86_64-2.7/layer0/Tetsurf.o build/temp.macosx-10.9-x86_64-2.7/layer0/Texture.o build/temp.macosx-10.9-x86_64-2.7/layer0/Tracker.o build/temp.macosx-10.9-x86_64-2.7/layer0/Triangle.o build/temp.macosx-10.9-x86_64-2.7/layer0/Util.o build/temp.macosx-10.9-x86_64-2.7/layer0/Vector.o build/temp.macosx-10.9-x86_64-2.7/layer0/Word.o build/temp.macosx-10.9-x86_64-2.7/layer1/Basis.o build/temp.macosx-10.9-x86_64-2.7/layer1/ButMode.o build/temp.macosx-10.9-x86_64-2.7/layer1/CGO.o build/temp.macosx-10.9-x86_64-2.7/layer1/Character.o build/temp.macosx-10.9-x86_64-2.7/layer1/Color.o build/temp.macosx-10.9-x86_64-2.7/layer1/Control.o build/temp.macosx-10.9-x86_64-2.7/layer1/Extrude.o build/temp.macosx-10.9-x86_64-2.7/layer1/Font.o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUT.o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUT8x13.o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUT9x15.o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUTHel10.o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUTHel12.o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUTHel18.o build/temp.macosx-10.9-x86_64-2.7/layer1/FontType.o build/temp.macosx-10.9-x86_64-2.7/layer1/Movie.o build/temp.macosx-10.9-x86_64-2.7/layer1/Ortho.o build/temp.macosx-10.9-x86_64-2.7/layer1/P.o build/temp.macosx-10.9-x86_64-2.7/layer1/PConv.o build/temp.macosx-10.9-x86_64-2.7/layer1/Pop.o build/temp.macosx-10.9-x86_64-2.7/layer1/PyMOLObject.o build/temp.macosx-10.9-x86_64-2.7/layer1/Ray.o build/temp.macosx-10.9-x86_64-2.7/layer1/Rep.o build/temp.macosx-10.9-x86_64-2.7/layer1/Scene.o build/temp.macosx-10.9-x86_64-2.7/layer1/ScrollBar.o build/temp.macosx-10.9-x86_64-2.7/layer1/Seq.o build/temp.macosx-10.9-x86_64-2.7/layer1/Setting.o build/temp.macosx-10.9-x86_64-2.7/layer1/Shaker.o build/temp.macosx-10.9-x86_64-2.7/layer1/Symmetry.o build/temp.macosx-10.9-x86_64-2.7/layer1/Text.o build/temp.macosx-10.9-x86_64-2.7/layer1/TypeFace.o build/temp.macosx-10.9-x86_64-2.7/layer1/View.o build/temp.macosx-10.9-x86_64-2.7/layer1/Wizard.o build/temp.macosx-10.9-x86_64-2.7/layer2/AtomInfo.o build/temp.macosx-10.9-x86_64-2.7/layer2/CoordSet.o build/temp.macosx-10.9-x86_64-2.7/layer2/DistSet.o build/temp.macosx-10.9-x86_64-2.7/layer2/GadgetSet.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectAlignment.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectCallback.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectCGO.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectDist.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectGadget.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectGadgetRamp.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectGroup.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMap.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMesh.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMolecule.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMolecule2.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectSlice.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectSurface.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectVolume.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepAngle.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepCartoon.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepCylBond.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDihedral.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDistDash.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDistLabel.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDot.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepEllipsoid.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepLabel.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepMesh.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepNonbonded.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepNonbondedSphere.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepRibbon.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepSphere.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepSurface.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepWireBond.o build/temp.macosx-10.9-x86_64-2.7/layer2/Sculpt.o build/temp.macosx-10.9-x86_64-2.7/layer2/SculptCache.o build/temp.macosx-10.9-x86_64-2.7/layer2/VFont.o build/temp.macosx-10.9-x86_64-2.7/layer3/Editor.o build/temp.macosx-10.9-x86_64-2.7/layer3/Executive.o build/temp.macosx-10.9-x86_64-2.7/layer3/PlugIOManager.o build/temp.macosx-10.9-x86_64-2.7/layer3/Seeker.o build/temp.macosx-10.9-x86_64-2.7/layer3/Selector.o build/temp.macosx-10.9-x86_64-2.7/layer4/Cmd.o build/temp.macosx-10.9-x86_64-2.7/layer4/Export.o build/temp.macosx-10.9-x86_64-2.7/layer4/Menu.o build/temp.macosx-10.9-x86_64-2.7/layer4/PopUp.o build/temp.macosx-10.9-x86_64-2.7/layer5/main.o build/temp.macosx-10.9-x86_64-2.7/layer5/PyMOL.o build/temp.macosx-10.9-x86_64-2.7/layer5/TestPyMOL.o build/temp.macosx-10.9-x86_64-2.7/modules/cealign/src/ccealignmodule.o build/temp.macosx-10.9-x86_64-2.7/build/generated/ShaderText.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -L/sw/lib -L/usr/lib -L/usr/X11/lib -L/sw/lib -lpng -lfreetype -lGLEW -lGL -lGLU -lglut -o build/lib.macosx-10.9-x86_64-2.7/pymol/_cmd.so building 'chempy.champ._champ' extension creating build/temp.macosx-10.9-x86_64-2.7/contrib/champ gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -Icontrib/champ -I/sw/include/python2.7 -c contrib/champ/champ.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/champ.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -Icontrib/champ -I/sw/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/champ_module.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -Icontrib/champ -I/sw/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/feedback2.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -Icontrib/champ -I/sw/include/python2.7 -c contrib/champ/err2.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/err2.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -Icontrib/champ -I/sw/include/python2.7 -c contrib/champ/chiral.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/chiral.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -Icontrib/champ -I/sw/include/python2.7 -c contrib/champ/list.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/list.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -Icontrib/champ -I/sw/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/os_memory.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -Icontrib/champ -I/sw/include/python2.7 -c contrib/champ/sort.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/sort.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -Icontrib/champ -I/sw/include/python2.7 -c contrib/champ/strblock.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/strblock.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -Icontrib/champ -I/sw/include/python2.7 -c contrib/champ/vla.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/vla.o gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib -L/sw/lib -I/sw/include build/temp.macosx-10.9-x86_64-2.7/contrib/champ/champ.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/champ_module.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/chiral.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/err2.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/feedback2.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/list.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/os_memory.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/sort.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/strblock.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/vla.o -L/sw/lib -o build/lib.macosx-10.9-x86_64-2.7/chempy/champ/_champ.so running install_lib creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7 creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/arc.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/bmin copying build/lib.macosx-10.9-x86_64-2.7/chempy/bmin/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/bmin copying build/lib.macosx-10.9-x86_64-2.7/chempy/bmin/commands.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/bmin copying build/lib.macosx-10.9-x86_64-2.7/chempy/bmin/realtime.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/bmin copying build/lib.macosx-10.9-x86_64-2.7/chempy/bmin/state.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/bmin copying build/lib.macosx-10.9-x86_64-2.7/chempy/bmin/util.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/bmin copying build/lib.macosx-10.9-x86_64-2.7/chempy/bond_amber.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/bond_mmff.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/bonds.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/brick.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/cc1.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/cex.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/champ copying build/lib.macosx-10.9-x86_64-2.7/chempy/champ/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/champ copying build/lib.macosx-10.9-x86_64-2.7/chempy/champ/_champ.so -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/champ copying build/lib.macosx-10.9-x86_64-2.7/chempy/champ/amber99.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/champ copying build/lib.macosx-10.9-x86_64-2.7/chempy/champ/assign.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/champ copying build/lib.macosx-10.9-x86_64-2.7/chempy/champ/formal_charges.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/champ copying build/lib.macosx-10.9-x86_64-2.7/chempy/charge.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/cif.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/cpv.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/dictdb.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/fast copying build/lib.macosx-10.9-x86_64-2.7/chempy/fast/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/fast creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/fragments copying build/lib.macosx-10.9-x86_64-2.7/chempy/fragments/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/fragments copying build/lib.macosx-10.9-x86_64-2.7/chempy/gamess1.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/gms.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/hetatm.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/io.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/lst.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/mae.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/map.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/mass.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/mmd.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/models.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/mol.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/mol2.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/neighbor.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/pdb.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/pkl.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/place.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/protein.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/protein_amber.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/protein_amber99.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/protein_mmff.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/protein_residues.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/sdf.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/solvate.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/tinker copying build/lib.macosx-10.9-x86_64-2.7/chempy/tinker/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/tinker copying build/lib.macosx-10.9-x86_64-2.7/chempy/tinker/amber.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/tinker copying build/lib.macosx-10.9-x86_64-2.7/chempy/tinker/keyword.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/tinker copying build/lib.macosx-10.9-x86_64-2.7/chempy/tinker/realtime.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/tinker copying build/lib.macosx-10.9-x86_64-2.7/chempy/tinker/state.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/tinker copying build/lib.macosx-10.9-x86_64-2.7/chempy/water_amber.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/water_residues.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy copying build/lib.macosx-10.9-x86_64-2.7/chempy/xyz.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/ColorEditor.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/Demo.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/PMGApp.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/PyMOLMapLoad.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/SetEditor.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/Setting.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/skins copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/skins creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/skins/demo copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/demo/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/skins/demo creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal/builder.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal/ModalWindow.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/skins/normal creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/startup copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/startup copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup/apbs_tools.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/startup copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup/remote_pdb_load.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/startup copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/TextEditor.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/volume.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_wx copying build/lib.macosx-10.9-x86_64-2.7/pmg_wx/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_wx creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/_cmd.so -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/api.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/callback.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/cgo.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/checking.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/cmd.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/colorramping.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/commanding.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/completing.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/computing.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/constants.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/constants_palette.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/contrib copying build/lib.macosx-10.9-x86_64-2.7/pymol/contrib/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/contrib copying build/lib.macosx-10.9-x86_64-2.7/pymol/controlling.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/creating.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/editing.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/editor.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/embed copying build/lib.macosx-10.9-x86_64-2.7/pymol/embed/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/embed creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/embed/epymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/embed/epymol/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/embed/epymol creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/embed/wxpymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/embed/wxpymol/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/embed/wxpymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/experimenting.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/exporting.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/externing.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/feedingback.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/fitting.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/gui.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/headering.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/helping.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/importing.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/internal.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/invocation.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/keyboard.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/keywords.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/locking.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/m4x.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/menu.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/monitoring.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/movie.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/moving.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/opengl copying build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/opengl creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/opengl/gl copying build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/gl/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/opengl/gl creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/opengl/glu copying build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glu/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/opengl/glu creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/opengl/glut copying build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glut/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/opengl/glut copying build/lib.macosx-10.9-x86_64-2.7/pymol/parser.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/parsing.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/plugins copying build/lib.macosx-10.9-x86_64-2.7/pymol/plugins/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/plugins copying build/lib.macosx-10.9-x86_64-2.7/pymol/plugins/installation.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/plugins copying build/lib.macosx-10.9-x86_64-2.7/pymol/plugins/legacysupport.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/plugins copying build/lib.macosx-10.9-x86_64-2.7/pymol/plugins/managergui.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/plugins copying build/lib.macosx-10.9-x86_64-2.7/pymol/plugins/repository.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/plugins copying build/lib.macosx-10.9-x86_64-2.7/pymol/povray.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/preset.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/querying.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/rpc.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/selecting.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/selector.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/setting.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/shortcut.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/util.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/vfont.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/viewing.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/annotation.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/appearance.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/benchmark.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/box.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/charge.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/cleanup.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/demo.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/density.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/distance.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/dragging.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/fedora.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/filter.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/label.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/measurement.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/message.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/mutagenesis.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/pair_fit.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/pseudoatom.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/renaming.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/sculpting.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/security.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/stereodemo.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/toggle.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizarding.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/xray.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol copying build/lib.macosx-10.9-x86_64-2.7/pymol/xwin.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol2 copying build/lib.macosx-10.9-x86_64-2.7/pymol2/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol2 copying build/lib.macosx-10.9-x86_64-2.7/pymol2/cmd2.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol2 copying build/lib.macosx-10.9-x86_64-2.7/pymol2/make_cmd2.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol2 creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/web copying build/lib.macosx-10.9-x86_64-2.7/web/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/web creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/web/examples copying build/lib.macosx-10.9-x86_64-2.7/web/examples/__init__.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/web/examples copying build/lib.macosx-10.9-x86_64-2.7/web/examples/justhttpd.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/web/examples copying build/lib.macosx-10.9-x86_64-2.7/web/pymolhttpd.py -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/web byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/arc.py to arc.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/bmin/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/bmin/commands.py to commands.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/bmin/realtime.py to realtime.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/bmin/state.py to state.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/bmin/util.py to util.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/bond_amber.py to bond_amber.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/bond_mmff.py to bond_mmff.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/bonds.py to bonds.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/brick.py to brick.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/cc1.py to cc1.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/cex.py to cex.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/champ/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/champ/amber99.py to amber99.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/champ/assign.py to assign.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/champ/formal_charges.py to formal_charges.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/charge.py to charge.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/cif.py to cif.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/cpv.py to cpv.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/dictdb.py to dictdb.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/fast/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/fragments/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/gamess1.py to gamess1.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/gms.py to gms.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/hetatm.py to hetatm.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/io.py to io.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/lst.py to lst.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/mae.py to mae.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/map.py to map.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/mass.py to mass.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/mmd.py to mmd.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/models.py to models.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/mol.py to mol.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/mol2.py to mol2.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/neighbor.py to neighbor.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/pdb.py to pdb.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/pkl.py to pkl.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/place.py to place.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/protein.py to protein.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/protein_amber.py to protein_amber.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/protein_amber99.py to protein_amber99.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/protein_mmff.py to protein_mmff.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/protein_residues.py to protein_residues.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/sdf.py to sdf.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/solvate.py to solvate.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/tinker/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/tinker/amber.py to amber.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/tinker/keyword.py to keyword.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/tinker/realtime.py to realtime.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/tinker/state.py to state.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/water_amber.py to water_amber.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/water_residues.py to water_residues.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/chempy/xyz.py to xyz.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/Demo.py to Demo.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/PMGApp.py to PMGApp.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/SetEditor.py to SetEditor.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/Setting.py to Setting.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/skins/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py to builder.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/startup/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/TextEditor.py to TextEditor.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/volume.py to volume.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_wx/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/api.py to api.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/callback.py to callback.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/cgo.py to cgo.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/checking.py to checking.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/cmd.py to cmd.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/colorramping.py to colorramping.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/commanding.py to commanding.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/completing.py to completing.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/computing.py to computing.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/constants.py to constants.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/constants_palette.py to constants_palette.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/contrib/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/controlling.py to controlling.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/creating.py to creating.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/editing.py to editing.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/editor.py to editor.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/embed/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/embed/epymol/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/experimenting.py to experimenting.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/exporting.py to exporting.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/externing.py to externing.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/feedingback.py to feedingback.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/fitting.py to fitting.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/gui.py to gui.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/headering.py to headering.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/helping.py to helping.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/importing.py to importing.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/internal.py to internal.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/invocation.py to invocation.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/keyboard.py to keyboard.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/keywords.py to keywords.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/locking.py to locking.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/m4x.py to m4x.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/menu.py to menu.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/monitoring.py to monitoring.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/movie.py to movie.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/moving.py to moving.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/opengl/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/opengl/gl/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/opengl/glu/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/opengl/glut/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/parser.py to parser.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/parsing.py to parsing.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/plugins/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/plugins/installation.py to installation.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/plugins/legacysupport.py to legacysupport.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/plugins/managergui.py to managergui.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/plugins/repository.py to repository.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/povray.py to povray.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/preset.py to preset.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/querying.py to querying.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/rpc.py to rpc.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/selecting.py to selecting.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/selector.py to selector.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/setting.py to setting.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/shortcut.py to shortcut.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/util.py to util.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/vfont.py to vfont.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/viewing.py to viewing.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/annotation.py to annotation.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/appearance.py to appearance.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/benchmark.py to benchmark.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/box.py to box.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/charge.py to charge.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/cleanup.py to cleanup.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/demo.py to demo.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/density.py to density.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/distance.py to distance.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/dragging.py to dragging.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/fedora.py to fedora.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/filter.py to filter.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/label.py to label.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/measurement.py to measurement.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/message.py to message.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/pair_fit.py to pair_fit.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/renaming.py to renaming.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/sculpting.py to sculpting.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/security.py to security.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/stereodemo.py to stereodemo.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizard/toggle.py to toggle.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/wizarding.py to wizarding.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/xray.py to xray.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/xwin.py to xwin.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol2/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol2/cmd2.py to cmd2.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol2/make_cmd2.py to make_cmd2.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/web/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/web/examples/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/web/examples/justhttpd.py to justhttpd.pyc byte-compiling /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/web/pymolhttpd.py to pymolhttpd.pyc running install_egg_info Writing /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol-1.7.1.1-py2.7.egg-info creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/pymol_path copying LICENSE -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/pymol_path copying data -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/pymol_path/data copying test -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/pymol_path/test copying scripts -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/pymol_path/scripts copying examples -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/pymol_path/examples creating /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/bin copying pymol -> /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/bin + cp -r data modules examples test scripts /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol + mkdir -p /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/pymol-py27/bin + cp pymol.cmd /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/pymol-py27/bin/pymol + chmod ugo+x /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/pymol-py27/bin/pymol + cp ../eMovie.py /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/startup/eMovie.py + cp ../eMovie_rigimol.inp /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pymol/eMovie_rigimol.inp + mkdir /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/lib/python2.7/site-packages/pmg_tk/startup/pynmr + '[' 2.7 == 2.6 ']' + rm -f /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/bin/pymol sudo -u fink-bld [ENV] sh -c /tmp/fink.WcNRh /usr/bin/install -d -m 700 /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/share/doc/pymol-py27 /bin/cp -r DEVELOPERS /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/share/doc/pymol-py27/ /bin/cp -r LICENSE /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/share/doc/pymol-py27/ /bin/cp -r README /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/share/doc/pymol-py27/ /bin/chmod -R go=u-w /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/share/doc/pymol-py27 /bin/rm -f /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/info/dir /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/info/dir.old /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/share/info/dir /sw/build.build/root-pymol-py27-1.7.1.1-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing package script postinst... Writing package script prerm... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-pymol-py27-1.7.1.1-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `pymol-py27' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/pymol-py27_1.7.1.1-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-pymol-py27-1.7.1.1-1 (Reading database ... 17764 files and directories currently installed.) Removing fink-buildlock-pymol-py27-1.7.1.1-1 ...