printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild pynifti-py27 2>&1 The package 'pynifti-py27' will be built without being installed. Reading build dependency for pynifti-py27-0.20090205.1-1... Reading dependency for pynifti-py27-0.20090205.1-1... Reading build conflict for pynifti-py27-0.20090205.1-1... The package 'nifticlib2-dev' will be installed. Reading dependency for nifticlib2-dev-2.0.0-1... Reading runtime dependency for nifticlib2-dev-2.0.0-1... The package 'nifticlib2-shlibs' will be installed. Reading dependency for nifticlib2-shlibs-2.0.0-1... Reading runtime dependency for nifticlib2-shlibs-2.0.0-1... The package 'numpy-py27' will be installed. Reading dependency for numpy-py27-1.8.1-1... Reading runtime dependency for numpy-py27-1.8.1-1... The package 'python27' will be installed. Reading dependency for python27-2.7.8-1... Reading runtime dependency for python27-2.7.8-1... The package 'swig' will be installed. Reading dependency for swig-3.0.0-1... Reading runtime dependency for swig-3.0.0-1... The package 'nose-py27' will be installed. Reading dependency for nose-py27-1.3.0-1... Reading runtime dependency for nose-py27-1.3.0-1... The package 'python27-shlibs' will be installed. Reading dependency for python27-shlibs-2.7.8-1... Reading runtime dependency for python27-shlibs-2.7.8-1... The package 'blt-shlibs' will be installed. Reading dependency for blt-shlibs-2.4z-160... Reading runtime dependency for blt-shlibs-2.4z-160... The package 'db53-aes-shlibs' will be installed. Reading dependency for db53-aes-shlibs-5.3.21-2... Reading runtime dependency for db53-aes-shlibs-5.3.21-2... The package 'expat1-shlibs' will be installed. Reading dependency for expat1-shlibs-2.1.0-1... Reading runtime dependency for expat1-shlibs-2.1.0-1... The package 'gdbm3-shlibs' will be installed. Reading dependency for gdbm3-shlibs-1.8.3-4... Reading runtime dependency for gdbm3-shlibs-1.8.3-4... The package 'libffi6-shlibs' will be installed. Reading dependency for libffi6-shlibs-3.1-1... Reading runtime dependency for libffi6-shlibs-3.1-1... The package 'libncursesw5-shlibs' will be installed. Reading dependency for libncursesw5-shlibs-5.9-20110507-1... Reading runtime dependency for libncursesw5-shlibs-5.9-20110507-1... The package 'openssl100-shlibs' will be installed. Reading dependency for openssl100-shlibs-1.0.1h-1... Reading runtime dependency for openssl100-shlibs-1.0.1h-1... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'sqlite3-shlibs' will be installed. Reading dependency for sqlite3-shlibs-3.8.3.1-1... Reading runtime dependency for sqlite3-shlibs-3.8.3.1-1... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'libpcre1-shlibs' will be installed. Reading dependency for libpcre1-shlibs-8.35-1... Reading runtime dependency for libpcre1-shlibs-8.35-1... The package 'setuptools-tng-py27' will be installed. Reading dependency for setuptools-tng-py27-5.1-1... Reading runtime dependency for setuptools-tng-py27-5.1-1... The package 'libjpeg9-shlibs' will be installed. Reading dependency for libjpeg9-shlibs-9a-1... Reading runtime dependency for libjpeg9-shlibs-9a-1... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The package 'fontconfig2-shlibs' will be installed. Reading dependency for fontconfig2-shlibs-2.10.2-1... Reading runtime dependency for fontconfig2-shlibs-2.10.2-1... The package 'freetype219-shlibs' will be installed. Reading dependency for freetype219-shlibs-2.4.12-1... Reading runtime dependency for freetype219-shlibs-2.4.12-1... The package 'xft2-shlibs' will be installed. Reading dependency for xft2-shlibs-2.2.0-3... Reading runtime dependency for xft2-shlibs-2.2.0-3... The package 'fontconfig-config' will be installed. Reading dependency for fontconfig-config-2.10.2-1... Reading runtime dependency for fontconfig-config-2.10.2-1... The following package will be rebuilt: pynifti-py27 The following 25 additional packages will be installed: blt-shlibs db53-aes-shlibs expat1-shlibs fontconfig-config fontconfig2-shlibs freetype219-shlibs gdbm3-shlibs libffi6-shlibs libjpeg9-shlibs libncursesw5-shlibs libpcre1-shlibs nifticlib2-dev nifticlib2-shlibs nose-py27 numpy-py27 openssl100-shlibs python27 python27-shlibs readline6-shlibs setuptools-tng-py27 sqlite3-shlibs swig tcltk tcltk-shlibs xft2-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/pynifti_0.20090205.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 89 586k 89 527k 0 0 528k 0 0:00:01 --:--:-- 0:00:01 528k 100 586k 100 586k 0 0 563k 0 0:00:01 0:00:01 --:--:-- 563k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/crypto/db53-aes-shlibs_5.3.21-2_darwin-x86_64.deb Selecting previously deselected package db53-aes-shlibs. (Reading database ... 4740 files and directories currently installed.) Unpacking db53-aes-shlibs (from .../db53-aes-shlibs_5.3.21-2_darwin-x86_64.deb) ... Setting up db53-aes-shlibs (5.3.21-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb Selecting previously deselected package expat1-shlibs. (Reading database ... 4750 files and directories currently installed.) Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ... Setting up expat1-shlibs (2.1.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/freetype219-shlibs_2.4.12-1_darwin-x86_64.deb Selecting previously deselected package freetype219-shlibs. (Reading database ... 4755 files and directories currently installed.) Unpacking freetype219-shlibs (from .../freetype219-shlibs_2.4.12-1_darwin-x86_64.deb) ... Setting up freetype219-shlibs (2.4.12-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/gdbm3-shlibs_1.8.3-4_darwin-x86_64.deb Selecting previously deselected package gdbm3-shlibs. (Reading database ... 4766 files and directories currently installed.) Unpacking gdbm3-shlibs (from .../gdbm3-shlibs_1.8.3-4_darwin-x86_64.deb) ... Setting up gdbm3-shlibs (1.8.3-4) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libffi6-shlibs_3.1-1_darwin-x86_64.deb Selecting previously deselected package libffi6-shlibs. (Reading database ... 4774 files and directories currently installed.) Unpacking libffi6-shlibs (from .../libffi6-shlibs_3.1-1_darwin-x86_64.deb) ... Setting up libffi6-shlibs (3.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjpeg9-shlibs_9a-1_darwin-x86_64.deb Selecting previously deselected package libjpeg9-shlibs. (Reading database ... 4775 files and directories currently installed.) Unpacking libjpeg9-shlibs (from .../libjpeg9-shlibs_9a-1_darwin-x86_64.deb) ... Setting up libjpeg9-shlibs (9a-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/libncursesw5-shlibs_5.9-20110507-1_darwin-x86_64.deb Selecting previously deselected package libncursesw5-shlibs. (Reading database ... 4778 files and directories currently installed.) Unpacking libncursesw5-shlibs (from .../libncursesw5-shlibs_5.9-20110507-1_darwin-x86_64.deb) ... Setting up libncursesw5-shlibs (5.9-20110507-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libpcre1-shlibs_8.35-1_darwin-x86_64.deb Selecting previously deselected package libpcre1-shlibs. (Reading database ... 4789 files and directories currently installed.) Unpacking libpcre1-shlibs (from .../libpcre1-shlibs_8.35-1_darwin-x86_64.deb) ... Setting up libpcre1-shlibs (8.35-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/nifticlib2-dev_2.0.0-1_darwin-x86_64.deb /sw/fink/debs/nifticlib2-shlibs_2.0.0-1_darwin-x86_64.deb Selecting previously deselected package nifticlib2-dev. (Reading database ... 4802 files and directories currently installed.) Unpacking nifticlib2-dev (from .../nifticlib2-dev_2.0.0-1_darwin-x86_64.deb) ... Selecting previously deselected package nifticlib2-shlibs. Unpacking nifticlib2-shlibs (from .../nifticlib2-shlibs_2.0.0-1_darwin-x86_64.deb) ... Setting up nifticlib2-shlibs (2.0.0-1) ... Setting up nifticlib2-dev (2.0.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb Selecting previously deselected package openssl100-shlibs. (Reading database ... 4823 files and directories currently installed.) Unpacking openssl100-shlibs (from .../openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb) ... Setting up openssl100-shlibs (1.0.1h-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb Selecting previously deselected package readline6-shlibs. (Reading database ... 4844 files and directories currently installed.) Unpacking readline6-shlibs (from .../readline6-shlibs_6.3.6-1_darwin-x86_64.deb) ... Setting up readline6-shlibs (6.3.6-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/database/sqlite3-shlibs_3.8.3.1-1_darwin-x86_64.deb Selecting previously deselected package sqlite3-shlibs. (Reading database ... 4855 files and directories currently installed.) Unpacking sqlite3-shlibs (from .../sqlite3-shlibs_3.8.3.1-1_darwin-x86_64.deb) ... Setting up sqlite3-shlibs (3.8.3.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/swig_3.0.0-1_darwin-x86_64.deb Selecting previously deselected package swig. (Reading database ... 4859 files and directories currently installed.) Unpacking swig (from .../swig_3.0.0-1_darwin-x86_64.deb) ... Setting up swig (3.0.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig-config_2.10.2-1_darwin-x86_64.deb Selecting previously deselected package fontconfig2-shlibs. (Reading database ... 5502 files and directories currently installed.) Unpacking fontconfig2-shlibs (from .../fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.10.2-1_darwin-x86_64.deb) ... Setting up fontconfig-config (2.10.2-1) ... Setting up fontconfig2-shlibs (2.10.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xft2-shlibs_2.2.0-3_darwin-x86_64.deb Selecting previously deselected package xft2-shlibs. (Reading database ... 5587 files and directories currently installed.) Unpacking xft2-shlibs (from .../xft2-shlibs_2.2.0-3_darwin-x86_64.deb) ... Setting up xft2-shlibs (2.2.0-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb Selecting previously deselected package tcltk. (Reading database ... 5596 files and directories currently installed.) Unpacking tcltk (from .../tcltk_8.6.1-104_darwin-x86_64.deb) ... Selecting previously deselected package tcltk-shlibs. Unpacking tcltk-shlibs (from .../tcltk-shlibs_8.6.1-104_darwin-x86_64.deb) ... Setting up tcltk-shlibs (8.6.1-104) ... Setting up tcltk (8.6.1-104) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/blt-shlibs_2.4z-160_darwin-x86_64.deb Selecting previously deselected package blt-shlibs. (Reading database ... 6072 files and directories currently installed.) Unpacking blt-shlibs (from .../blt-shlibs_2.4z-160_darwin-x86_64.deb) ... Setting up blt-shlibs (2.4z-160) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/python27_2.7.8-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/python27-shlibs_2.7.8-1_darwin-x86_64.deb Selecting previously deselected package python27. (Reading database ... 6078 files and directories currently installed.) Unpacking python27 (from .../python27_2.7.8-1_darwin-x86_64.deb) ... Selecting previously deselected package python27-shlibs. Unpacking python27-shlibs (from .../python27-shlibs_2.7.8-1_darwin-x86_64.deb) ... Setting up python27-shlibs (2.7.8-1) ... Setting up python27 (2.7.8-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/setuptools-tng-py27_5.1-1_darwin-x86_64.deb Selecting previously deselected package setuptools-tng-py27. (Reading database ... 13289 files and directories currently installed.) Unpacking setuptools-tng-py27 (from .../setuptools-tng-py27_5.1-1_darwin-x86_64.deb) ... Setting up setuptools-tng-py27 (5.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/nose-py27_1.3.0-1_darwin-x86_64.deb Selecting previously deselected package nose-py27. (Reading database ... 13460 files and directories currently installed.) Unpacking nose-py27 (from .../nose-py27_1.3.0-1_darwin-x86_64.deb) ... Setting up nose-py27 (1.3.0-1) ... Checking available versions of nosetests, updating links in /sw/etc/alternatives ... (You may modify the symlinks there yourself if desired - see `man ln'.) Updating nosetests (/sw/bin/nosetests) to point to /sw/bin/nosetests2.7. Updating nosetests.1 (/sw/share/man/man1/nosetests.1) to point to /sw//share/man/man1/nosetests-py27.1. Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/numpy-py27_1.8.1-1_darwin-x86_64.deb Selecting previously deselected package numpy-py27. (Reading database ... 13645 files and directories currently installed.) Unpacking numpy-py27 (from .../numpy-py27_1.8.1-1_darwin-x86_64.deb) ... Setting up numpy-py27 (1.8.1-1) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-pynifti-py27-0.20090205.1-1 /sw/build.build dpkg-deb: building package `fink-buildlock-pynifti-py27-0.20090205.1-1' in `/sw/build.build/fink-buildlock-pynifti-py27-0.20090205.1-1_2014.08.04-19.46.42_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-pynifti-py27-0.20090205.1-1_2014.08.04-19.46.42_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-pynifti-py27-0.20090205.1-1. (Reading database ... 14423 files and directories currently installed.) Unpacking fink-buildlock-pynifti-py27-0.20090205.1-1 (from .../fink-buildlock-pynifti-py27-0.20090205.1-1_2014.08.04-19.46.42_darwin-x86_64.deb) ... Setting up fink-buildlock-pynifti-py27-0.20090205.1-1 (2014.08.04-19.46.42) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.pHBU3 env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/pynifti_0.20090205.1.tar.gz pynifti-0.20090205.1/ pynifti-0.20090205.1/3rd/ pynifti-0.20090205.1/3rd/nifticlibs/ pynifti-0.20090205.1/3rd/nifticlibs/LICENSE pynifti-0.20090205.1/3rd/nifticlibs/Makefile pynifti-0.20090205.1/3rd/nifticlibs/Makefile.win pynifti-0.20090205.1/3rd/nifticlibs/README pynifti-0.20090205.1/3rd/nifticlibs/nifti1.h pynifti-0.20090205.1/3rd/nifticlibs/nifti1_io.c pynifti-0.20090205.1/3rd/nifticlibs/nifti1_io.h pynifti-0.20090205.1/3rd/nifticlibs/znzlib.c pynifti-0.20090205.1/3rd/nifticlibs/znzlib.h pynifti-0.20090205.1/bin/ pynifti-0.20090205.1/bin/pynifti_pst pynifti-0.20090205.1/doc/ pynifti-0.20090205.1/doc/_static/ pynifti-0.20090205.1/doc/_static/item.png pynifti-0.20090205.1/doc/_static/pynifti.css pynifti-0.20090205.1/doc/_templates/ pynifti-0.20090205.1/doc/_templates/indexsidebar.html pynifti-0.20090205.1/doc/_templates/layout.html pynifti-0.20090205.1/doc/misc/ pynifti-0.20090205.1/doc/misc/header.py pynifti-0.20090205.1/doc/misc/pylintrc pynifti-0.20090205.1/doc/pics/ pynifti-0.20090205.1/doc/pics/fslview_pst.png pynifti-0.20090205.1/doc/pics/gnuplot_ts.png pynifti-0.20090205.1/doc/Makefile pynifti-0.20090205.1/doc/changelog.txt pynifti-0.20090205.1/doc/conf.py pynifti-0.20090205.1/doc/contents.txt pynifti-0.20090205.1/doc/examples.txt pynifti-0.20090205.1/doc/index.txt pynifti-0.20090205.1/doc/installation.txt pynifti-0.20090205.1/doc/intro.txt pynifti-0.20090205.1/doc/legal.txt pynifti-0.20090205.1/doc/manual.txt pynifti-0.20090205.1/doc/modref.txt pynifti-0.20090205.1/man/ pynifti-0.20090205.1/man/pynifti_pst.1 pynifti-0.20090205.1/nifti/ pynifti-0.20090205.1/nifti/__init__.py pynifti-0.20090205.1/nifti/clib.i pynifti-0.20090205.1/nifti/extensions.py pynifti-0.20090205.1/nifti/format.py pynifti-0.20090205.1/nifti/image.py pynifti-0.20090205.1/nifti/imgfx.py pynifti-0.20090205.1/nifti/nifticlib.py pynifti-0.20090205.1/nifti/niftiformat.py pynifti-0.20090205.1/nifti/niftiimage.py pynifti-0.20090205.1/nifti/utils.py pynifti-0.20090205.1/tests/ pynifti-0.20090205.1/tests/data/ pynifti-0.20090205.1/tests/data/example4d.nii.gz pynifti-0.20090205.1/tests/main.py pynifti-0.20090205.1/tests/test_extensions.py pynifti-0.20090205.1/tests/test_fileio.py pynifti-0.20090205.1/tests/test_format.py pynifti-0.20090205.1/tests/test_misc.py pynifti-0.20090205.1/tests/test_utils.py pynifti-0.20090205.1/AUTHOR pynifti-0.20090205.1/COPYING pynifti-0.20090205.1/Changelog pynifti-0.20090205.1/MANIFEST.in pynifti-0.20090205.1/Makefile pynifti-0.20090205.1/Makefile.win pynifti-0.20090205.1/TODO pynifti-0.20090205.1/setup.py pynifti-0.20090205.1/setup_egg.py pynifti-0.20090205.1/PKG-INFO sudo -u fink-bld [ENV] sh -c /tmp/fink.2IQzI [ -r /sw/fink/dists/stable/main/finkinfo/sci/pynifti-py.patch ] sudo -u fink-bld [ENV] sh -c /tmp/fink.L2Fsi sed -e 's|@PREFIX@|/sw|g' /sw/fink/dists/stable/main/finkinfo/sci/pynifti-py.patch | patch -p1 patching file setup.py rm -rf bin sudo -u fink-bld [ENV] sh -c /tmp/fink.61FPQ python2.7 setup.py build running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "nifti._clib" sources creating build creating build/src.macosx-10.9-x86_64-2.7 creating build/src.macosx-10.9-x86_64-2.7/nifti swig: nifti/clib.i swig -python -I/sw/include/nifti -o build/src.macosx-10.9-x86_64-2.7/nifti/clib_wrap.c -outdir build/src.macosx-10.9-x86_64-2.7/nifti nifti/clib.i Language subdirectory: python Search paths: ./ /sw/include/nifti/ ./swig_lib/python/ /sw/share/swig/3.0.0/python/ ./swig_lib/ /sw/share/swig/3.0.0/ Preprocessing... Starting language-specific parse... Processing unnamed structs... Processing types... C++ analysis... Generating wrappers... build_src: building npy-pkg config files running build_py creating build/lib.macosx-10.9-x86_64-2.7 creating build/lib.macosx-10.9-x86_64-2.7/nifti copying nifti/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/nifti copying nifti/extensions.py -> build/lib.macosx-10.9-x86_64-2.7/nifti copying nifti/format.py -> build/lib.macosx-10.9-x86_64-2.7/nifti copying nifti/image.py -> build/lib.macosx-10.9-x86_64-2.7/nifti copying nifti/imgfx.py -> build/lib.macosx-10.9-x86_64-2.7/nifti copying nifti/nifticlib.py -> build/lib.macosx-10.9-x86_64-2.7/nifti copying nifti/niftiformat.py -> build/lib.macosx-10.9-x86_64-2.7/nifti copying nifti/niftiimage.py -> build/lib.macosx-10.9-x86_64-2.7/nifti copying nifti/utils.py -> build/lib.macosx-10.9-x86_64-2.7/nifti copying build/src.macosx-10.9-x86_64-2.7/nifti/clib.py -> build/lib.macosx-10.9-x86_64-2.7/nifti running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext building 'nifti._clib' extension compiling C sources C compiler: gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include creating build/temp.macosx-10.9-x86_64-2.7 creating build/temp.macosx-10.9-x86_64-2.7/build creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7 creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/nifti compile options: '-I/sw/include/nifti -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include/python2.7 -c' gcc: build/src.macosx-10.9-x86_64-2.7/nifti/clib_wrap.c In file included from build/src.macosx-10.9-x86_64-2.7/nifti/clib_wrap.c:2995: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761: /sw/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ build/src.macosx-10.9-x86_64-2.7/nifti/clib_wrap.c:3061:54: warning: incompatible pointer types initializing 'destructor' (aka 'void (*)(PyObject *)') with an expression of type 'void (_MyDeallocObject *)' [-Wincompatible-pointer-types] 0, "mydeallocator", sizeof(_MyDeallocObject), 0, _mydealloc_dealloc, ^~~~~~~~~~~~~~~~~~ build/src.macosx-10.9-x86_64-2.7/nifti/clib_wrap.c:3150:12: warning: incompatible pointer types assigning to 'PyObject *' (aka 'struct _object *') from '_MyDeallocObject *' [-Wincompatible-pointer-types] newobj = PyObject_New(_MyDeallocObject, &_MyDeallocType); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3 warnings generated. gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib -L/sw/lib -I/sw/include build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/nifti/clib_wrap.o -L/sw/lib -lniftiio -lznz -o build/lib.macosx-10.9-x86_64-2.7/nifti/_clib.so -bundle /bin/rm -rf /sw/build.build/root-pynifti-py27-0.20090205.1-1 /bin/mkdir -p /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw /bin/mkdir -p /sw/build.build/root-pynifti-py27-0.20090205.1-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-pynifti-py27-0.20090205.1-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.I01Yw python2.7 setup.py install --root=/sw/build.build/root-pynifti-py27-0.20090205.1-1 running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "nifti._clib" sources build_src: building npy-pkg config files running build_py running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext running install_lib creating /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib creating /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7 creating /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages creating /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti copying build/lib.macosx-10.9-x86_64-2.7/nifti/__init__.py -> /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti copying build/lib.macosx-10.9-x86_64-2.7/nifti/_clib.so -> /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti copying build/lib.macosx-10.9-x86_64-2.7/nifti/clib.py -> /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti copying build/lib.macosx-10.9-x86_64-2.7/nifti/extensions.py -> /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti copying build/lib.macosx-10.9-x86_64-2.7/nifti/format.py -> /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti copying build/lib.macosx-10.9-x86_64-2.7/nifti/image.py -> /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti copying build/lib.macosx-10.9-x86_64-2.7/nifti/imgfx.py -> /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti copying build/lib.macosx-10.9-x86_64-2.7/nifti/nifticlib.py -> /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti copying build/lib.macosx-10.9-x86_64-2.7/nifti/niftiformat.py -> /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti copying build/lib.macosx-10.9-x86_64-2.7/nifti/niftiimage.py -> /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti copying build/lib.macosx-10.9-x86_64-2.7/nifti/utils.py -> /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti byte-compiling /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti/clib.py to clib.pyc byte-compiling /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti/extensions.py to extensions.pyc byte-compiling /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti/format.py to format.pyc byte-compiling /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti/image.py to image.pyc byte-compiling /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti/imgfx.py to imgfx.pyc byte-compiling /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti/nifticlib.py to nifticlib.pyc byte-compiling /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti/niftiformat.py to niftiformat.pyc byte-compiling /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti/niftiimage.py to niftiimage.pyc byte-compiling /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/nifti/utils.py to utils.pyc running install_egg_info Writing /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/lib/python2.7/site-packages/pynifti-0.20090205.1-py2.7.egg-info running install_clib customize UnixCCompiler sudo -u fink-bld [ENV] sh -c /tmp/fink.9hOBe /usr/bin/install -d -m 700 /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/share/doc/pynifti-py27 /bin/cp -r AUTHOR /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/share/doc/pynifti-py27/ /bin/cp -r COPYING /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/share/doc/pynifti-py27/ /bin/cp -r Changelog /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/share/doc/pynifti-py27/ /bin/cp -r TODO /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/share/doc/pynifti-py27/ /bin/chmod -R go=u-w /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/share/doc/pynifti-py27 /bin/rm -f /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/info/dir /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/info/dir.old /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/share/info/dir /sw/build.build/root-pynifti-py27-0.20090205.1-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-pynifti-py27-0.20090205.1-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `pynifti-py27' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/pynifti-py27_0.20090205.1-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-pynifti-py27-0.20090205.1-1 (Reading database ... 14424 files and directories currently installed.) Removing fink-buildlock-pynifti-py27-0.20090205.1-1 ...