printf '

' | fink --no-use-binary-dist --yes  --build-as-nobody rebuild rdkit-postgresql93 2>&1
The package 'rdkit-postgresql93' will be built without being installed.
Reading build dependency for rdkit-postgresql93-2014.03.1-3...
Reading dependency for rdkit-postgresql93-2014.03.1-3...
Reading build conflict for rdkit-postgresql93-2014.03.1-3...
The package 'boost1.53.python27' will be installed.
Reading dependency for boost1.53.python27-1.53.0-2...
Reading runtime dependency for boost1.53.python27-1.53.0-2...
The package 'python27' will be installed.
Reading dependency for python27-2.7.8-1...
Reading runtime dependency for python27-2.7.8-1...
The package 'numpy-py27' will be installed.
Reading dependency for numpy-py27-1.8.1-1...
Reading runtime dependency for numpy-py27-1.8.1-1...
The package 'sqlite3-dev' will be installed.
Reading dependency for sqlite3-dev-3.8.3.1-1...
Reading runtime dependency for sqlite3-dev-3.8.3.1-1...
The package 'cmake' will be installed.
Reading dependency for cmake-2.8.12-2...
Reading runtime dependency for cmake-2.8.12-2...
The package 'postgresql93-dev' will be installed.
Reading dependency for postgresql93-dev-9.3.4-1...
Reading runtime dependency for postgresql93-dev-9.3.4-1...
The package 'postgresql93' will be installed.
Reading dependency for postgresql93-9.3.4-1...
Reading runtime dependency for postgresql93-9.3.4-1...
The package 'rdkit-dev' will be installed.
Reading dependency for rdkit-dev-2014.03.1-3...
Reading runtime dependency for rdkit-dev-2014.03.1-3...
The package 'rdkit-shlibs' will be installed.
Reading dependency for rdkit-shlibs-2014.03.1-3...
Reading runtime dependency for rdkit-shlibs-2014.03.1-3...
The package 'rdkit' will be installed.
Reading dependency for rdkit-2014.03.1-3...
Reading runtime dependency for rdkit-2014.03.1-3...
The package 'boost1.53.nopython-shlibs' will be installed.
Reading dependency for boost1.53.nopython-shlibs-1.53.0-2...
Reading runtime dependency for boost1.53.nopython-shlibs-1.53.0-2...
The package 'boost1.53.python27-shlibs' will be installed.
Reading dependency for boost1.53.python27-shlibs-1.53.0-2...
Reading runtime dependency for boost1.53.python27-shlibs-1.53.0-2...
The package 'python27-shlibs' will be installed.
Reading dependency for python27-shlibs-2.7.8-1...
Reading runtime dependency for python27-shlibs-2.7.8-1...
The package 'sqlite3-shlibs' will be installed.
Reading dependency for sqlite3-shlibs-3.8.3.1-1...
Reading runtime dependency for sqlite3-shlibs-3.8.3.1-1...
The package 'pil-py27' will be installed.
Reading dependency for pil-py27-2.5.1-1...
Reading runtime dependency for pil-py27-2.5.1-1...
The package 'postgresql93-shlibs' will be installed.
Reading dependency for postgresql93-shlibs-9.3.4-1...
Reading runtime dependency for postgresql93-shlibs-9.3.4-1...
The package 'blt-shlibs' will be installed.
Reading dependency for blt-shlibs-2.4z-160...
Reading runtime dependency for blt-shlibs-2.4z-160...
The package 'db53-aes-shlibs' will be installed.
Reading dependency for db53-aes-shlibs-5.3.21-2...
Reading runtime dependency for db53-aes-shlibs-5.3.21-2...
The package 'expat1-shlibs' will be installed.
Reading dependency for expat1-shlibs-2.1.0-1...
Reading runtime dependency for expat1-shlibs-2.1.0-1...
The package 'gdbm3-shlibs' will be installed.
Reading dependency for gdbm3-shlibs-1.8.3-4...
Reading runtime dependency for gdbm3-shlibs-1.8.3-4...
The package 'libffi6-shlibs' will be installed.
Reading dependency for libffi6-shlibs-3.1-1...
Reading runtime dependency for libffi6-shlibs-3.1-1...
The package 'libncursesw5-shlibs' will be installed.
Reading dependency for libncursesw5-shlibs-5.9-20110507-1...
Reading runtime dependency for libncursesw5-shlibs-5.9-20110507-1...
The package 'openssl100-shlibs' will be installed.
Reading dependency for openssl100-shlibs-1.0.1h-1...
Reading runtime dependency for openssl100-shlibs-1.0.1h-1...
The package 'readline6-shlibs' will be installed.
Reading dependency for readline6-shlibs-6.3.6-1...
Reading runtime dependency for readline6-shlibs-6.3.6-1...
The package 'tcltk' will be installed.
Reading dependency for tcltk-8.6.1-104...
Reading runtime dependency for tcltk-8.6.1-104...
The package 'nose-py27' will be installed.
Reading dependency for nose-py27-1.3.0-1...
Reading runtime dependency for nose-py27-1.3.0-1...
The package 'libidn-shlibs' will be installed.
Reading dependency for libidn-shlibs-1.22-6...
Reading runtime dependency for libidn-shlibs-1.22-6...
The package 'daemonic' will be installed.
Reading dependency for daemonic-20010902-4...
Reading runtime dependency for daemonic-20010902-4...
The package 'libxml2-shlibs' will be installed.
Reading dependency for libxml2-shlibs-2.9.1-3...
Reading runtime dependency for libxml2-shlibs-2.9.1-3...
The package 'libxslt-shlibs' will be installed.
Reading dependency for libxslt-shlibs-1.1.28-2...
Reading runtime dependency for libxslt-shlibs-1.1.28-2...
The package 'passwd-postgres' will be installed.
Reading dependency for passwd-postgres-20131113-1...
Reading runtime dependency for passwd-postgres-20131113-1...
The package 'cffi-py27' will be installed.
Reading dependency for cffi-py27-0.8.6-1...
Reading runtime dependency for cffi-py27-0.8.6-1...
The package 'freetype219-shlibs' will be installed.
Reading dependency for freetype219-shlibs-2.4.12-1...
Reading runtime dependency for freetype219-shlibs-2.4.12-1...
The package 'lcms2-shlibs' will be installed.
Reading dependency for lcms2-shlibs-2.4-2...
Reading runtime dependency for lcms2-shlibs-2.4-2...
The package 'libjpeg9-shlibs' will be installed.
Reading dependency for libjpeg9-shlibs-9a-1...
Reading runtime dependency for libjpeg9-shlibs-9a-1...
The package 'libtiff5-shlibs' will be installed.
Reading dependency for libtiff5-shlibs-4.0.3-5...
Reading runtime dependency for libtiff5-shlibs-4.0.3-5...
The package 'libwebp5-shlibs' will be installed.
Reading dependency for libwebp5-shlibs-0.4.0-1...
Reading runtime dependency for libwebp5-shlibs-0.4.0-1...
The package 'tcltk-shlibs' will be installed.
Reading dependency for tcltk-shlibs-8.6.1-104...
Reading runtime dependency for tcltk-shlibs-8.6.1-104...
The package 'fontconfig2-shlibs' will be installed.
Reading dependency for fontconfig2-shlibs-2.10.2-1...
Reading runtime dependency for fontconfig2-shlibs-2.10.2-1...
The package 'xft2-shlibs' will be installed.
Reading dependency for xft2-shlibs-2.2.0-3...
Reading runtime dependency for xft2-shlibs-2.2.0-3...
The package 'setuptools-tng-py27' will be installed.
Reading dependency for setuptools-tng-py27-5.1-1...
Reading runtime dependency for setuptools-tng-py27-5.1-1...
The package 'libxml2-bin' will be installed.
Reading dependency for libxml2-bin-2.9.1-3...
Reading runtime dependency for libxml2-bin-2.9.1-3...
The package 'liblzma5-shlibs' will be installed.
Reading dependency for liblzma5-shlibs-5.0.5-2...
Reading runtime dependency for liblzma5-shlibs-5.0.5-2...
The package 'passwd-core' will be installed.
Reading dependency for passwd-core-20131113-1...
Reading runtime dependency for passwd-core-20131113-1...
The package 'pycparser-py27' will be installed.
Reading dependency for pycparser-py27-2.10-1...
Reading runtime dependency for pycparser-py27-2.10-1...
The package 'libjbig-shlibs' will be installed.
Reading dependency for libjbig-shlibs-2.0-1...
Reading runtime dependency for libjbig-shlibs-2.0-1...
The package 'fontconfig-config' will be installed.
Reading dependency for fontconfig-config-2.10.2-1...
Reading runtime dependency for fontconfig-config-2.10.2-1...
The package 'passwd-configs' will be installed.
Reading dependency for passwd-configs-20131113-1...
Reading runtime dependency for passwd-configs-20131113-1...
The following package will be rebuilt:
 rdkit-postgresql93
The following 48 additional packages will be installed:
 blt-shlibs boost1.53.nopython-shlibs boost1.53.python27
 boost1.53.python27-shlibs cffi-py27 cmake daemonic db53-aes-shlibs
 expat1-shlibs fontconfig-config fontconfig2-shlibs freetype219-shlibs
 gdbm3-shlibs lcms2-shlibs libffi6-shlibs libidn-shlibs libjbig-shlibs
 libjpeg9-shlibs liblzma5-shlibs libncursesw5-shlibs libtiff5-shlibs
 libwebp5-shlibs libxml2-bin libxml2-shlibs libxslt-shlibs nose-py27
 numpy-py27 openssl100-shlibs passwd-configs passwd-core passwd-postgres
 pil-py27 postgresql93 postgresql93-dev postgresql93-shlibs pycparser-py27
 python27 python27-shlibs rdkit rdkit-dev rdkit-shlibs readline6-shlibs
 setuptools-tng-py27 sqlite3-dev sqlite3-shlibs tcltk tcltk-shlibs
 xft2-shlibs
Do you want to continue? [Y/n] (assuming default)
Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/boost1.53.nopython-shlibs_1.53.0-2_darwin-x86_64.deb
Selecting previously deselected package boost1.53.nopython-shlibs.
(Reading database ... 4740 files and directories currently installed.)
Unpacking boost1.53.nopython-shlibs (from .../boost1.53.nopython-shlibs_1.53.0-2_darwin-x86_64.deb) ...
Setting up boost1.53.nopython-shlibs (1.53.0-2) ...

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/crypto/db53-aes-shlibs_5.3.21-2_darwin-x86_64.deb
Selecting previously deselected package db53-aes-shlibs.
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Unpacking db53-aes-shlibs (from .../db53-aes-shlibs_5.3.21-2_darwin-x86_64.deb) ...
Setting up db53-aes-shlibs (5.3.21-2) ...
Clearing dependency_libs of .la files being installed

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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb
Selecting previously deselected package expat1-shlibs.
(Reading database ... 4801 files and directories currently installed.)
Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ...
Setting up expat1-shlibs (2.1.0-1) ...

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/freetype219-shlibs_2.4.12-1_darwin-x86_64.deb
Selecting previously deselected package freetype219-shlibs.
(Reading database ... 4806 files and directories currently installed.)
Unpacking freetype219-shlibs (from .../freetype219-shlibs_2.4.12-1_darwin-x86_64.deb) ...
Setting up freetype219-shlibs (2.4.12-1) ...

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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/gdbm3-shlibs_1.8.3-4_darwin-x86_64.deb
Selecting previously deselected package gdbm3-shlibs.
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Unpacking gdbm3-shlibs (from .../gdbm3-shlibs_1.8.3-4_darwin-x86_64.deb) ...
Setting up gdbm3-shlibs (1.8.3-4) ...

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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/lcms2-shlibs_2.4-2_darwin-x86_64.deb
Selecting previously deselected package lcms2-shlibs.
(Reading database ... 4825 files and directories currently installed.)
Unpacking lcms2-shlibs (from .../lcms2-shlibs_2.4-2_darwin-x86_64.deb) ...
Setting up lcms2-shlibs (2.4-2) ...

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libffi6-shlibs_3.1-1_darwin-x86_64.deb
Selecting previously deselected package libffi6-shlibs.
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Unpacking libffi6-shlibs (from .../libffi6-shlibs_3.1-1_darwin-x86_64.deb) ...
Setting up libffi6-shlibs (3.1-1) ...

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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libidn-shlibs_1.22-6_darwin-x86_64.deb
Selecting previously deselected package libidn-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjbig-shlibs_2.0-1_darwin-x86_64.deb
Selecting previously deselected package libjbig-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjpeg9-shlibs_9a-1_darwin-x86_64.deb
Selecting previously deselected package libjpeg9-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/utils/liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/libncursesw5-shlibs_5.9-20110507-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb
Selecting previously deselected package libtiff5-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libwebp5-shlibs_0.4.0-1_darwin-x86_64.deb
Selecting previously deselected package libwebp5-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb
Selecting previously deselected package openssl100-shlibs.
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Unpacking openssl100-shlibs (from .../openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb) ...
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/passwd-configs_20131113-1_darwin-x86_64.deb
Selecting previously deselected package passwd-configs.
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/passwd-core_20131113-1_darwin-x86_64.deb
Selecting previously deselected package passwd-core.
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Unpacking passwd-core (from .../passwd-core_20131113-1_darwin-x86_64.deb) ...
Setting up passwd-core (20131113-1) ...
Using existing /sw/etc/passwd.conf settings.
If you want to reset them, remove that file and run
'fink reinstall passwd-core'.
Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/passwd-postgres_20131113-1_darwin-x86_64.deb
Selecting previously deselected package passwd-postgres.
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Setting up passwd-postgres (20131113-1) ...
'postgres' user exists, with parameters:
uid=602(postgres) gid=602(postgres) groups=602(postgres),12(everyone),61(localaccounts),100(_lpoperator),402(com.apple.sharepoint.group.1)
Fink will use these settings.

'postgres' group exists, with parameters:

AppleMetaNodeLocation: /Local/Default
GeneratedUID: A930A0A0-E4E1-48DF-A1A5-B4CC27AD8001
GroupMembership: postgres
Password: *
PrimaryGroupID: 602
RecordName: postgres
RecordType: dsRecTypeStandard:Groups

Fink will use these settings.

Using existing entry for 'postgres' user/group.


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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb
Selecting previously deselected package readline6-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/database/sqlite3-dev_3.8.3.1-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/database/sqlite3-shlibs_3.8.3.1-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig-config_2.10.2-1_darwin-x86_64.deb
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Setting up libxml2-bin (2.9.1-3) ...

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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libxslt-shlibs_1.1.28-2_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xft2-shlibs_2.2.0-3_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/daemonic_20010902-4_darwin-x86_64.deb
Selecting previously deselected package daemonic.
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RDKit_2014_03_1/Web/RDExtras/MolDepict.py
RDKit_2014_03_1/Web/RDExtras/MolImage.py
RDKit_2014_03_1/Web/RDExtras/.htaccess
RDKit_2014_03_1/README
RDKit_2014_03_1/ReleaseNotes.txt
RDKit_2014_03_1/Data/
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RDKit_2014_03_1/Data/RDData.sqlt
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RDKit_2014_03_1/Data/DTDs/validate.py
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RDKit_2014_03_1/Data/Functional_Group_Hierarchy.txt
RDKit_2014_03_1/Data/Salts.txt
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RDKit_2014_03_1/Data/SmartsLib/tests/bench2.py
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RDKit_2014_03_1/Contrib/fraggle/rdkit_tversky.py
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RDKit_2014_03_1/Contrib/fraggle/data/query_fragmentation.csv
RDKit_2014_03_1/Contrib/fraggle/data/fragmentation_tversky_out
RDKit_2014_03_1/Contrib/fraggle/fraggle.py
RDKit_2014_03_1/Contrib/fraggle/cxn_tversky.py
RDKit_2014_03_1/Contrib/fraggle/atomcontrib.py
RDKit_2014_03_1/Contrib/mmpa/
RDKit_2014_03_1/Contrib/mmpa/mol_transform.py
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RDKit_2014_03_1/Contrib/mmpa/data/sample_db_search_subs_output.txt
RDKit_2014_03_1/Contrib/mmpa/data/sample_cansmirks.txt
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RDKit_2014_03_1/Contrib/mmpa/README.txt
RDKit_2014_03_1/Contrib/mmpa/search_mmp_db.py
RDKit_2014_03_1/Contrib/mmpa/create_mmp_db.py
RDKit_2014_03_1/Contrib/mmpa/rfrag.py
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RDKit_2014_03_1/Contrib/CMakeLists.txt
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RDKit_2014_03_1/Contrib/LEF/ClusterFps.py
RDKit_2014_03_1/Contrib/LEF/README.txt
RDKit_2014_03_1/Contrib/LEF/CreateFps.py
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RDKit_2014_03_1/Contrib/ConformerParser/Wrap/CMakeLists.txt
RDKit_2014_03_1/Contrib/ConformerParser/Wrap/rdConformerParser.cpp
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RDKit_2014_03_1/Contrib/ConformerParser/test_data/water_coords_bad.trx
RDKit_2014_03_1/Contrib/ConformerParser/test.cpp
RDKit_2014_03_1/Contrib/ConformerParser/CMakeLists.txt
RDKit_2014_03_1/Contrib/ConformerParser/ConformerParser.h
RDKit_2014_03_1/Contrib/ConformerParser/ConformerParser.cpp
RDKit_2014_03_1/Contrib/M_Kossner/
RDKit_2014_03_1/Contrib/M_Kossner/Frames.py
RDKit_2014_03_1/Contrib/M_Kossner/README
RDKit_2014_03_1/Contrib/M_Kossner/BaseFeatures_DIP2_NoMicrospecies.fdef
RDKit_2014_03_1/Contrib/PBF/
RDKit_2014_03_1/Contrib/PBF/PBFRDKit.cpp
RDKit_2014_03_1/Contrib/PBF/README
RDKit_2014_03_1/Contrib/PBF/testData/
RDKit_2014_03_1/Contrib/PBF/testData/egfr.sdf
RDKit_2014_03_1/Contrib/PBF/testData/egfr.out
RDKit_2014_03_1/Contrib/PBF/PBFRDKit.h
RDKit_2014_03_1/Contrib/PBF/Makefile
RDKit_2014_03_1/Contrib/PBF/demo.cpp
RDKit_2014_03_1/Regress/
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RDKit_2014_03_1/Regress/Data/mols.1000.txt.gz
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RDKit_2014_03_1/Regress/Data/RLewis_smarts.txt
RDKit_2014_03_1/Regress/Data/fptest.pgdump.gz
RDKit_2014_03_1/Regress/Scripts/
RDKit_2014_03_1/Regress/Scripts/timings.py
RDKit_2014_03_1/Regress/Scripts/bench_cartridge.sql
RDKit_2014_03_1/rdkit-config-version.cmake.in
RDKit_2014_03_1/Docs/
RDKit_2014_03_1/Docs/RDKit_Overview.pdf
RDKit_2014_03_1/Docs/about.qt.html
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RDKit_2014_03_1/rdkit/DataStructs/UnitTestTopNContainer.py
RDKit_2014_03_1/rdkit/DataStructs/LazySignature.py
RDKit_2014_03_1/rdkit/DataStructs/__init__.py
RDKit_2014_03_1/rdkit/DataStructs/VectCollection.py
RDKit_2014_03_1/rdkit/DataManip/
RDKit_2014_03_1/rdkit/DataManip/__init__.py
RDKit_2014_03_1/rdkit/DataManip/Metric/
RDKit_2014_03_1/rdkit/DataManip/Metric/__init__.py
RDKit_2014_03_1/rdkit/sping/
RDKit_2014_03_1/rdkit/sping/SVG/
RDKit_2014_03_1/rdkit/sping/SVG/__init__.py
RDKit_2014_03_1/rdkit/sping/SVG/pidSVG.py
RDKit_2014_03_1/rdkit/sping/README
RDKit_2014_03_1/rdkit/sping/ReportLab/
RDKit_2014_03_1/rdkit/sping/ReportLab/pidReportLab.py
RDKit_2014_03_1/rdkit/sping/ReportLab/__init__.py
RDKit_2014_03_1/rdkit/sping/Qt/
RDKit_2014_03_1/rdkit/sping/Qt/pidQt.py
RDKit_2014_03_1/rdkit/sping/Qt/__init__.py
RDKit_2014_03_1/rdkit/sping/Qt/pidQt4.py
RDKit_2014_03_1/rdkit/sping/colors.py
RDKit_2014_03_1/rdkit/sping/stringformat.py
RDKit_2014_03_1/rdkit/sping/WX/
RDKit_2014_03_1/rdkit/sping/WX/pidWX.py
RDKit_2014_03_1/rdkit/sping/WX/__init__.py
RDKit_2014_03_1/rdkit/sping/WX/pidWxDc.py
RDKit_2014_03_1/rdkit/sping/tests/
RDKit_2014_03_1/rdkit/sping/tests/testallps.py
RDKit_2014_03_1/rdkit/sping/tests/pidtest.py
RDKit_2014_03_1/rdkit/sping/tests/pstests.py
RDKit_2014_03_1/rdkit/sping/tests/__init__.py
RDKit_2014_03_1/rdkit/sping/util/
RDKit_2014_03_1/rdkit/sping/util/HTMLPiddler.py
RDKit_2014_03_1/rdkit/sping/util/__init__.py
RDKit_2014_03_1/rdkit/sping/PS/
RDKit_2014_03_1/rdkit/sping/PS/pidPS.py
RDKit_2014_03_1/rdkit/sping/PS/latin1MetricsCache.py
RDKit_2014_03_1/rdkit/sping/PS/psmetrics.py
RDKit_2014_03_1/rdkit/sping/PS/__init__.py
RDKit_2014_03_1/rdkit/sping/PS/fontinfo.py
RDKit_2014_03_1/rdkit/sping/TK/
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RDKit_2014_03_1/rdkit/sping/TK/__init__.py
RDKit_2014_03_1/rdkit/sping/pagesizes.py
RDKit_2014_03_1/rdkit/sping/PDF/
RDKit_2014_03_1/rdkit/sping/PDF/pdfutils.py
RDKit_2014_03_1/rdkit/sping/PDF/pdfgeom.py
RDKit_2014_03_1/rdkit/sping/PDF/pdfdoc.py
RDKit_2014_03_1/rdkit/sping/PDF/__init__.py
RDKit_2014_03_1/rdkit/sping/PDF/pdfmetrics.py
RDKit_2014_03_1/rdkit/sping/PDF/pdfgen.py
RDKit_2014_03_1/rdkit/sping/PDF/pidPDF.py
RDKit_2014_03_1/rdkit/sping/Pyart/
RDKit_2014_03_1/rdkit/sping/Pyart/Fontmapping.py
RDKit_2014_03_1/rdkit/sping/Pyart/pidPyart.py
RDKit_2014_03_1/rdkit/sping/Pyart/__init__.py
RDKit_2014_03_1/rdkit/sping/__init__.py
RDKit_2014_03_1/rdkit/sping/pid.py
RDKit_2014_03_1/rdkit/sping/examples/
RDKit_2014_03_1/rdkit/sping/examples/formatted-strings.py
RDKit_2014_03_1/rdkit/sping/examples/tkCanvas-with-scrollbars.py
RDKit_2014_03_1/rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py
RDKit_2014_03_1/rdkit/sping/utils.py
RDKit_2014_03_1/rdkit/sping/PIL/
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RDKit_2014_03_1/rdkit/sping/PIL/__init__.py
RDKit_2014_03_1/rdkit/sping/PIL/pilfonts/
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RDKit_2014_03_1/rdkit/sping/PIL/pilfonts/symbol-10.pbm
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RDKit_2014_03_1/rdkit/sping/PIL/pilfonts/times-bold-24.pbm
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RDKit_2014_03_1/rdkit/sping/PIL/pilfonts/symbol-18.pil
RDKit_2014_03_1/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pbm
RDKit_2014_03_1/rdkit/sping/PIL/pilfonts/removemedium.py
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RDKit_2014_03_1/rdkit/sping/PIL/pilfonts/courier-8.pil.1
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RDKit_2014_03_1/rdkit/sping/PIL/pilfonts/times-14.pbm
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RDKit_2014_03_1/rdkit/sping/PIL/pilfonts/courier-8.pil
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RDKit_2014_03_1/rdkit/sping/PIL/pilfonts/times-bold-12.pbm
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RDKit_2014_03_1/rdkit/sping/PIL/pilfonts/courier-bold-12.pil
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RDKit_2014_03_1/rdkit/sping/PIL/pilfonts/times-18.pbm
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RDKit_2014_03_1/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pil
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RDKit_2014_03_1/rdkit/sping/PIL/pilfonts/courier-bold-24.pbm
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RDKit_2014_03_1/rdkit/sping/patches/
RDKit_2014_03_1/rdkit/sping/patches/Imaging-1.1-fixplugin-path
RDKit_2014_03_1/rdkit/sping/patches/Imaging-1.1.1.diff
RDKit_2014_03_1/rdkit/Avalon/
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RDKit_2014_03_1/rdkit/Logger/
RDKit_2014_03_1/rdkit/Logger/test_list.py
RDKit_2014_03_1/rdkit/Logger/SpingDemo.py
RDKit_2014_03_1/rdkit/Logger/Logger.py
RDKit_2014_03_1/rdkit/Logger/__init__.py
RDKit_2014_03_1/rdkit/Logger/UnitTestLogger.py
RDKit_2014_03_1/rdkit/Logger/demo.py
RDKit_2014_03_1/rdkit/utils/
RDKit_2014_03_1/rdkit/utils/chemdraw.py
RDKit_2014_03_1/rdkit/utils/SliceTools.py
RDKit_2014_03_1/rdkit/utils/12h.gif
RDKit_2014_03_1/rdkit/utils/test1.gif
RDKit_2014_03_1/rdkit/utils/spiral.py
RDKit_2014_03_1/rdkit/utils/retest.txt
RDKit_2014_03_1/rdkit/utils/comhack.py
RDKit_2014_03_1/rdkit/utils/test3.gif
RDKit_2014_03_1/rdkit/utils/fileutils.py
RDKit_2014_03_1/rdkit/utils/cactvs.py
RDKit_2014_03_1/rdkit/utils/REFile.py
RDKit_2014_03_1/rdkit/utils/chemdraw_qax.py
RDKit_2014_03_1/rdkit/utils/__init__.py
RDKit_2014_03_1/rdkit/utils/Licensing.py
RDKit_2014_03_1/rdkit/utils/GenLicense.py
RDKit_2014_03_1/rdkit/utils/listutils.py
RDKit_2014_03_1/rdkit/utils/test2.gif
RDKit_2014_03_1/rdkit/utils/chemutils.py
RDKit_2014_03_1/rdkit/utils/GUIDs.py
RDKit_2014_03_1/rdkit/utils/PiddleTools.py
RDKit_2014_03_1/rdkit/utils/PilTools.py
RDKit_2014_03_1/rdkit/Dbase/
RDKit_2014_03_1/rdkit/Dbase/StorageUtils.py
RDKit_2014_03_1/rdkit/Dbase/test_list.py
RDKit_2014_03_1/rdkit/Dbase/DbConnection.py
RDKit_2014_03_1/rdkit/Dbase/UnitTestDbResultSet.py
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RDKit_2014_03_1/rdkit/Dbase/Pubmed/
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RDKit_2014_03_1/rdkit/Dbase/Pubmed/QueryParams.py
RDKit_2014_03_1/rdkit/Dbase/Pubmed/test_data/
RDKit_2014_03_1/rdkit/Dbase/Pubmed/test_data/haslinks.xml
RDKit_2014_03_1/rdkit/Dbase/Pubmed/test_data/encoding_author_record.xml
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RDKit_2014_03_1/rdkit/Dbase/Pubmed/test_data/links.both.xml
RDKit_2014_03_1/rdkit/Dbase/Pubmed/test_data/counts.xml
RDKit_2014_03_1/rdkit/Dbase/Pubmed/test_data/records.xml
RDKit_2014_03_1/rdkit/Dbase/Pubmed/test_data/summary.xml
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RDKit_2014_03_1/rdkit/Dbase/Pubmed/Records.py
RDKit_2014_03_1/rdkit/Dbase/Pubmed/Searches.py
RDKit_2014_03_1/rdkit/Dbase/UnitTestDbConnect.py
RDKit_2014_03_1/rdkit/Dbase/test_data/
RDKit_2014_03_1/rdkit/Dbase/test_data/RDData.psql
RDKit_2014_03_1/rdkit/Dbase/test_data/dbtest.csv
RDKit_2014_03_1/rdkit/Dbase/test_data/dbtest.nulls.csv
RDKit_2014_03_1/rdkit/Dbase/test_data/dbtest.xls
RDKit_2014_03_1/rdkit/Dbase/test_data/RDData.sqlite
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RDKit_2014_03_1/rdkit/Dbase/test_data/rdtest.sql
RDKit_2014_03_1/rdkit/Dbase/test_data/RDTests.psql
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RDKit_2014_03_1/rdkit/Dbase/DbResultSet.py
RDKit_2014_03_1/rdkit/Dbase/DbReport.py
RDKit_2014_03_1/rdkit/Dbase/DbInfo.py
RDKit_2014_03_1/rdkit/Dbase/__init__.py
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RDKit_2014_03_1/rdkit/DistanceGeometry/
RDKit_2014_03_1/rdkit/DistanceGeometry/__init__.py
RDKit_2014_03_1/rdkit/RDLogger.py
RDKit_2014_03_1/rdkit/Numerics/
RDKit_2014_03_1/rdkit/Numerics/__init__.py
RDKit_2014_03_1/rdkit/CMakeLists.txt
RDKit_2014_03_1/rdkit/ForceField/
RDKit_2014_03_1/rdkit/ForceField/__init__.py
RDKit_2014_03_1/rdkit/VLib/
RDKit_2014_03_1/rdkit/VLib/test_list.py
RDKit_2014_03_1/rdkit/VLib/NodeLib/
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RDKit_2014_03_1/rdkit/VLib/NodeLib/DbPickleSupplier.py
RDKit_2014_03_1/rdkit/VLib/NodeLib/DbMolSupply.py
RDKit_2014_03_1/rdkit/VLib/NodeLib/test_data/
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RDKit_2014_03_1/rdkit/VLib/NodeLib/test_data/pgp_20.txt
RDKit_2014_03_1/rdkit/VLib/NodeLib/SmilesDupeFilter.py
RDKit_2014_03_1/rdkit/VLib/NodeLib/SmartsMolFilter.py
RDKit_2014_03_1/rdkit/VLib/NodeLib/SmilesOutput.py
RDKit_2014_03_1/rdkit/VLib/NodeLib/SDSupply.py
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RDKit_2014_03_1/rdkit/VLib/NodeLib/SmartsRemover.py
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RDKit_2014_03_1/rdkit/RDConfig.py
RDKit_2014_03_1/rdkit/__init__.py
RDKit_2014_03_1/rdkit/Chem/
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RDKit_2014_03_1/rdkit/Chem/FragmentCatalog.py
RDKit_2014_03_1/rdkit/Chem/TemplateAlign.py
RDKit_2014_03_1/rdkit/Chem/UnitTestInchi.py
RDKit_2014_03_1/rdkit/Chem/test_list.py
RDKit_2014_03_1/rdkit/Chem/MolDb/
RDKit_2014_03_1/rdkit/Chem/MolDb/Loader.py
RDKit_2014_03_1/rdkit/Chem/MolDb/Loader_sa.py
RDKit_2014_03_1/rdkit/Chem/MolDb/FingerprintUtils.py
RDKit_2014_03_1/rdkit/Chem/MolDb/Loader_orig.py
RDKit_2014_03_1/rdkit/Chem/MolDb/__init__.py
RDKit_2014_03_1/rdkit/Chem/Pharm3D/
RDKit_2014_03_1/rdkit/Chem/Pharm3D/test_list.py
RDKit_2014_03_1/rdkit/Chem/Pharm3D/UnitTestEmbed.py
RDKit_2014_03_1/rdkit/Chem/Pharm3D/EmbedLib.py
RDKit_2014_03_1/rdkit/Chem/Pharm3D/test_data/
RDKit_2014_03_1/rdkit/Chem/Pharm3D/test_data/cdk2-syn-clip100.pkl.gz
RDKit_2014_03_1/rdkit/Chem/Pharm3D/test_data/Issue268.fdef
RDKit_2014_03_1/rdkit/Chem/Pharm3D/test_data/mol-s-3.mol
RDKit_2014_03_1/rdkit/Chem/Pharm3D/test_data/Issue268_Mol2.mol
RDKit_2014_03_1/rdkit/Chem/Pharm3D/test_data/BaseFeatures.fdef
RDKit_2014_03_1/rdkit/Chem/Pharm3D/test_data/mol-r-3.mol
RDKit_2014_03_1/rdkit/Chem/Pharm3D/test_data/mol-r.mol
RDKit_2014_03_1/rdkit/Chem/Pharm3D/test_data/Issue268_Pcop.pkl
RDKit_2014_03_1/rdkit/Chem/Pharm3D/test_data/mol-s.mol
RDKit_2014_03_1/rdkit/Chem/Pharm3D/test_data/Issue268_Mol1.mol
RDKit_2014_03_1/rdkit/Chem/Pharm3D/Pharmacophore.py
RDKit_2014_03_1/rdkit/Chem/Pharm3D/__init__.py
RDKit_2014_03_1/rdkit/Chem/Pharm3D/ExcludedVolume.py
RDKit_2014_03_1/rdkit/Chem/Pharm3D/UnitTestPharmacophore.py
RDKit_2014_03_1/rdkit/Chem/UnitTestChemSmarts.py
RDKit_2014_03_1/rdkit/Chem/UnitTestOldBugs.py
RDKit_2014_03_1/rdkit/Chem/UnitTestChemAtom.py
RDKit_2014_03_1/rdkit/Chem/MolSurf.py
RDKit_2014_03_1/rdkit/Chem/UnitTestFunctionalGroups.py
RDKit_2014_03_1/rdkit/Chem/Scaffolds/
RDKit_2014_03_1/rdkit/Chem/Scaffolds/test_list.py
RDKit_2014_03_1/rdkit/Chem/Scaffolds/test_MurckoScaffold.py
RDKit_2014_03_1/rdkit/Chem/Scaffolds/MurckoScaffold.py
RDKit_2014_03_1/rdkit/Chem/Scaffolds/__init__.py
RDKit_2014_03_1/rdkit/Chem/UnitTestChemv2.py
RDKit_2014_03_1/rdkit/Chem/Fingerprints/
RDKit_2014_03_1/rdkit/Chem/Fingerprints/test_list.py
RDKit_2014_03_1/rdkit/Chem/Fingerprints/ClusterMols.py
RDKit_2014_03_1/rdkit/Chem/Fingerprints/FingerprintMols.py
RDKit_2014_03_1/rdkit/Chem/Fingerprints/UnitTestFingerprints.py
RDKit_2014_03_1/rdkit/Chem/Fingerprints/MolSimilarity.py
RDKit_2014_03_1/rdkit/Chem/Fingerprints/UnitTestSimScreener.py
RDKit_2014_03_1/rdkit/Chem/Fingerprints/__init__.py
RDKit_2014_03_1/rdkit/Chem/Fingerprints/DbFpSupplier.py
RDKit_2014_03_1/rdkit/Chem/Fingerprints/SimilarityScreener.py
RDKit_2014_03_1/rdkit/Chem/UnitTestChemBond.py
RDKit_2014_03_1/rdkit/Chem/PeriodicTable.py
RDKit_2014_03_1/rdkit/Chem/UnitTestLipinski.py
RDKit_2014_03_1/rdkit/Chem/AllChem.py
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RDKit_2014_03_1/Code/ForceField/MMFF/TorsionConstraint.cpp
RDKit_2014_03_1/Code/ForceField/MMFF/OopBend.h
RDKit_2014_03_1/Code/ForceField/CMakeLists.txt
RDKit_2014_03_1/Code/ForceField/Contrib.h
RDKit_2014_03_1/Code/ForceField/ForceField.h
RDKit_2014_03_1/Code/ForceField/UFF/
RDKit_2014_03_1/Code/ForceField/UFF/test_list.py
RDKit_2014_03_1/Code/ForceField/UFF/Inversion.cpp
RDKit_2014_03_1/Code/ForceField/UFF/Nonbonded.cpp
RDKit_2014_03_1/Code/ForceField/UFF/PositionConstraint.cpp
RDKit_2014_03_1/Code/ForceField/UFF/PositionConstraint.h
RDKit_2014_03_1/Code/ForceField/UFF/Contribs.h
RDKit_2014_03_1/Code/ForceField/UFF/Params.h
RDKit_2014_03_1/Code/ForceField/UFF/DistanceConstraint.cpp
RDKit_2014_03_1/Code/ForceField/UFF/Nonbonded.h
RDKit_2014_03_1/Code/ForceField/UFF/TorsionConstraint.h
RDKit_2014_03_1/Code/ForceField/UFF/AngleBend.cpp
RDKit_2014_03_1/Code/ForceField/UFF/TorsionAngle.h
RDKit_2014_03_1/Code/ForceField/UFF/Inversion.h
RDKit_2014_03_1/Code/ForceField/UFF/Params.cpp
RDKit_2014_03_1/Code/ForceField/UFF/AngleConstraint.cpp
RDKit_2014_03_1/Code/ForceField/UFF/CMakeLists.txt
RDKit_2014_03_1/Code/ForceField/UFF/AngleConstraint.h
RDKit_2014_03_1/Code/ForceField/UFF/testUFFForceField.cpp
RDKit_2014_03_1/Code/ForceField/UFF/DistanceConstraint.h
RDKit_2014_03_1/Code/ForceField/UFF/BondStretch.h
RDKit_2014_03_1/Code/ForceField/UFF/TorsionAngle.cpp
RDKit_2014_03_1/Code/ForceField/UFF/AngleBend.h
RDKit_2014_03_1/Code/ForceField/UFF/BondStretch.cpp
RDKit_2014_03_1/Code/ForceField/UFF/TorsionConstraint.cpp
RDKit_2014_03_1/Code/JavaWrappers/
RDKit_2014_03_1/Code/JavaWrappers/BondIterators.i
RDKit_2014_03_1/Code/JavaWrappers/extend_std_vector.i
RDKit_2014_03_1/Code/JavaWrappers/QueryAtom.i
RDKit_2014_03_1/Code/JavaWrappers/SmilesWrite.i
RDKit_2014_03_1/Code/JavaWrappers/PeriodicTable_doc.i
RDKit_2014_03_1/Code/JavaWrappers/ROMol_doc.i
RDKit_2014_03_1/Code/JavaWrappers/Conformer.i
RDKit_2014_03_1/Code/JavaWrappers/Subgraphs.i
RDKit_2014_03_1/Code/JavaWrappers/make_templates.py
RDKit_2014_03_1/Code/JavaWrappers/RWMol.i
RDKit_2014_03_1/Code/JavaWrappers/SanitException.i
RDKit_2014_03_1/Code/JavaWrappers/MonomerInfo.i
RDKit_2014_03_1/Code/JavaWrappers/Point3D_doc.i
RDKit_2014_03_1/Code/JavaWrappers/QueryBond.i
RDKit_2014_03_1/Code/JavaWrappers/ChemReactions_doc.i
RDKit_2014_03_1/Code/JavaWrappers/csharp_wrapper/
RDKit_2014_03_1/Code/JavaWrappers/csharp_wrapper/GraphMolCSharp.i
RDKit_2014_03_1/Code/JavaWrappers/csharp_wrapper/README
RDKit_2014_03_1/Code/JavaWrappers/csharp_wrapper/RDKit2DotNet.csproj
RDKit_2014_03_1/Code/JavaWrappers/csharp_wrapper/RDKitCSharpTest/
RDKit_2014_03_1/Code/JavaWrappers/csharp_wrapper/RDKitCSharpTest/Program.cs
RDKit_2014_03_1/Code/JavaWrappers/csharp_wrapper/RDKitCSharpTest/RDKitCSharpTest.csproj
RDKit_2014_03_1/Code/JavaWrappers/csharp_wrapper/RDKitCSharpTest/Properties/
RDKit_2014_03_1/Code/JavaWrappers/csharp_wrapper/RDKitCSharpTest/Properties/AssemblyInfo.cs
RDKit_2014_03_1/Code/JavaWrappers/csharp_wrapper/CMakeLists.txt
RDKit_2014_03_1/Code/JavaWrappers/csharp_wrapper/Properties/
RDKit_2014_03_1/Code/JavaWrappers/csharp_wrapper/Properties/AssemblyInfo.cs
RDKit_2014_03_1/Code/JavaWrappers/csharp_wrapper/std_list.i
RDKit_2014_03_1/Code/JavaWrappers/csharp_wrapper/test.cs
RDKit_2014_03_1/Code/JavaWrappers/QueryBond_doc.i
RDKit_2014_03_1/Code/JavaWrappers/SmilesParse.i
RDKit_2014_03_1/Code/JavaWrappers/QueryAtom_doc.i
RDKit_2014_03_1/Code/JavaWrappers/Atom.i
RDKit_2014_03_1/Code/JavaWrappers/ForceField.i
RDKit_2014_03_1/Code/JavaWrappers/QueryOps.i
RDKit_2014_03_1/Code/JavaWrappers/Bond_doc.i
RDKit_2014_03_1/Code/JavaWrappers/MorganFingerprints.i
RDKit_2014_03_1/Code/JavaWrappers/Transform2D_doc.i
RDKit_2014_03_1/Code/JavaWrappers/ChemReactions.i
RDKit_2014_03_1/Code/JavaWrappers/AddHs.i
RDKit_2014_03_1/Code/JavaWrappers/ROMol.i
RDKit_2014_03_1/Code/JavaWrappers/DistGeom.i
RDKit_2014_03_1/Code/JavaWrappers/AvalonLib.i
RDKit_2014_03_1/Code/JavaWrappers/types.i
RDKit_2014_03_1/Code/JavaWrappers/GenericRDKitException.h
RDKit_2014_03_1/Code/JavaWrappers/Canon.i
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src/
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src/org/
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src/org/RDKit/
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src/org/RDKit/.gitignore
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/GraphMolJava.i
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/ErrorHandlingTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/PDBTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/ChemTransformsTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/DescriptorTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/PicklingTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/BasicMolecule2Tests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/GraphMolTest.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/SmilesTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/SuppliersTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/ChemTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/ChemAtomTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/LipinskiTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/DistanceGeometryTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/SmilesCreationTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/ChemReactionTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/ConformerTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/ChemSmartsTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/ForceFieldsTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/Chemv2Tests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/AtomPairsTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/ChemBondTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/WrapperTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/SmilesDetailsTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/AlignTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/GraphMolTestSuite.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/HManipulationsTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/FingerprintsTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/AromaticTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/InchiTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/BasicMoleculeTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/AvalonLibTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/MemoryTests.java
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/CMakeLists.txt
RDKit_2014_03_1/Code/JavaWrappers/gmwrapper/std_list.i
RDKit_2014_03_1/Code/JavaWrappers/Inchi.i
RDKit_2014_03_1/Code/JavaWrappers/build_docs.sh
RDKit_2014_03_1/Code/JavaWrappers/MolWriters.i
RDKit_2014_03_1/Code/JavaWrappers/Descriptors.i
RDKit_2014_03_1/Code/JavaWrappers/Rings.i
RDKit_2014_03_1/Code/JavaWrappers/MolTransforms.i
RDKit_2014_03_1/Code/JavaWrappers/SmilesWriter_doc.i
RDKit_2014_03_1/Code/JavaWrappers/MolSupplier.i
RDKit_2014_03_1/Code/JavaWrappers/SmilesMolSupplier_doc.i
RDKit_2014_03_1/Code/JavaWrappers/MolOps.i
RDKit_2014_03_1/Code/JavaWrappers/TDTWriter_doc.i
RDKit_2014_03_1/Code/JavaWrappers/CMakeLists.txt
RDKit_2014_03_1/Code/JavaWrappers/DiversityPick.i
RDKit_2014_03_1/Code/JavaWrappers/parse_doxy_html.py
RDKit_2014_03_1/Code/JavaWrappers/BitOps.i
RDKit_2014_03_1/Code/JavaWrappers/ExplicitBitVect.i
RDKit_2014_03_1/Code/JavaWrappers/BondIterators_doc.i
RDKit_2014_03_1/Code/JavaWrappers/RingInfo_doc.i
RDKit_2014_03_1/Code/JavaWrappers/AtomPairs.i
RDKit_2014_03_1/Code/JavaWrappers/ErrorGenerator.i
RDKit_2014_03_1/Code/JavaWrappers/Fingerprints.i
RDKit_2014_03_1/Code/JavaWrappers/DiversityPick.h
RDKit_2014_03_1/Code/JavaWrappers/RWMol_doc.i
RDKit_2014_03_1/Code/JavaWrappers/Lipinski.java
RDKit_2014_03_1/Code/JavaWrappers/SDMolSupplier_doc.i
RDKit_2014_03_1/Code/JavaWrappers/Bond.i
RDKit_2014_03_1/Code/JavaWrappers/RDKFuncs_doc.i
RDKit_2014_03_1/Code/JavaWrappers/AtomIterators.i
RDKit_2014_03_1/Code/JavaWrappers/Transform3D_doc.i
RDKit_2014_03_1/Code/JavaWrappers/Conformer_doc.i
RDKit_2014_03_1/Code/JavaWrappers/RingInfo.i
RDKit_2014_03_1/Code/JavaWrappers/point.i
RDKit_2014_03_1/Code/JavaWrappers/PeriodicTable.i
RDKit_2014_03_1/Code/JavaWrappers/SmartsWrite.i
RDKit_2014_03_1/Code/JavaWrappers/Atom_doc.i
RDKit_2014_03_1/Code/JavaWrappers/ExplicitBitVect_doc.i
RDKit_2014_03_1/Code/JavaWrappers/TDTMolSupplier_doc.i
RDKit_2014_03_1/Code/JavaWrappers/RDKitExceptions.i
RDKit_2014_03_1/Code/JavaWrappers/ChemTransforms.i
RDKit_2014_03_1/Code/JavaWrappers/transforms.i
RDKit_2014_03_1/Code/RDBoost/
RDKit_2014_03_1/Code/RDBoost/python_streambuf.h
RDKit_2014_03_1/Code/RDBoost/list_indexing_suite.hpp
RDKit_2014_03_1/Code/RDBoost/Exceptions.h
RDKit_2014_03_1/Code/RDBoost/Wrap/
RDKit_2014_03_1/Code/RDBoost/Wrap/RDBase.cpp
RDKit_2014_03_1/Code/RDBoost/Wrap/CMakeLists.txt
RDKit_2014_03_1/Code/RDBoost/PySequenceHolder.h
RDKit_2014_03_1/Code/RDBoost/CMakeLists.txt
RDKit_2014_03_1/Code/RDBoost/Wrap.cpp
RDKit_2014_03_1/Code/RDBoost/Wrap.h
RDKit_2014_03_1/Code/Catalogs/
RDKit_2014_03_1/Code/Catalogs/Catalog.cpp
RDKit_2014_03_1/Code/Catalogs/CatalogEntry.h
RDKit_2014_03_1/Code/Catalogs/Catalog.h
RDKit_2014_03_1/Code/Catalogs/CMakeLists.txt
RDKit_2014_03_1/Code/Catalogs/CatalogParams.h
RDKit_2014_03_1/Code/Catalogs/CatalogEntry.cpp
RDKit_2014_03_1/Code/Catalogs/CatalogParams.cpp
RDKit_2014_03_1/Code/Geometry/
RDKit_2014_03_1/Code/Geometry/test_list.py
RDKit_2014_03_1/Code/Geometry/Transform.h
RDKit_2014_03_1/Code/Geometry/testTransforms.cpp
RDKit_2014_03_1/Code/Geometry/testData/
RDKit_2014_03_1/Code/Geometry/testData/grid1.bin
RDKit_2014_03_1/Code/Geometry/Wrap/
RDKit_2014_03_1/Code/Geometry/Wrap/test_list.py
RDKit_2014_03_1/Code/Geometry/Wrap/UniformGrid3D.cpp
RDKit_2014_03_1/Code/Geometry/Wrap/CMakeLists.txt
RDKit_2014_03_1/Code/Geometry/Wrap/testGeometry.py
RDKit_2014_03_1/Code/Geometry/Wrap/rdGeometry.cpp
RDKit_2014_03_1/Code/Geometry/Wrap/Point.cpp
RDKit_2014_03_1/Code/Geometry/UniformGrid3D.cpp
RDKit_2014_03_1/Code/Geometry/point.h
RDKit_2014_03_1/Code/Geometry/GridUtils.h
RDKit_2014_03_1/Code/Geometry/Transform2D.h
RDKit_2014_03_1/Code/Geometry/Grid3D.h
RDKit_2014_03_1/Code/Geometry/Transform3D.h
RDKit_2014_03_1/Code/Geometry/UniformGrid3D.h
RDKit_2014_03_1/Code/Geometry/point.cpp
RDKit_2014_03_1/Code/Geometry/Transform2D.cpp
RDKit_2014_03_1/Code/Geometry/CMakeLists.txt
RDKit_2014_03_1/Code/Geometry/Utils.h
RDKit_2014_03_1/Code/Geometry/GridUtils.cpp
RDKit_2014_03_1/Code/Geometry/testGrid.cpp
RDKit_2014_03_1/Code/Geometry/Transform3D.cpp
RDKit_2014_03_1/Code/doxygen/
RDKit_2014_03_1/Code/doxygen/doxygen.config
RDKit_2014_03_1/Code/cmake/
RDKit_2014_03_1/Code/cmake/Modules/
RDKit_2014_03_1/Code/cmake/Modules/RDKitUtils.cmake
RDKit_2014_03_1/Code/cmake/Modules/FindNumPy.cmake
RDKit_2014_03_1/Code/cmake/Modules/FindInchi.cmake
RDKit_2014_03_1/Code/cmake/Modules/FindBISON.cmake
RDKit_2014_03_1/Code/cmake/Modules/FindFLEX.cmake
RDKit_2014_03_1/Code/cmake/Modules/BoostUtils.cmake
sudo -u fink-bld [ENV] sh -c /tmp/fink.cgtsU
/tmp/fink.pERAJ
#!/bin/sh -efv
RDBASE=$PWD
export RDBASE
mkdir build
cd build 
BOOSTROOT=/sw CC=/usr/bin/gcc CXX=/usr/bin/g++  cmake    -DRDK_BUILD_INCHI_SUPPORT=ON  -DFLEX_EXECUTABLE:FILEPATH=/usr/bin/flex -DCMAKE_OSX_SYSROOT:PATH="/" -DCMAKE_OSX_DEPLOYMENT_TARGET:STRING="" -DCMAKE_INSTALL_PREFIX=/sw -DCMAKE_INSTALL_NAME_DIR=/sw/lib/rdkit   -DCMAKE_PREFIX_PATH=/sw  -DBOOST_LIBRARYDIR=""$BOOSTROOT"/lib" -DBOOST_ROOT="$BOOSTROOT"  -DBoost_NO_SYSTEM_PATHS=ON -DPYTHON_LIBRARY=/sw/lib/python2.7/config/libpython2.7.dylib  -DPYTHON_INCLUDE_DIR=/sw/include/python2.7 -DPYTHON_EXECUTABLE=/sw/bin/python2.7 ..  
-- The C compiler identification is Clang 5.1.0
-- The CXX compiler identification is Clang 5.1.0
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++
-- Check for working CXX compiler: /usr/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Found PythonLibs: /sw/lib/python2.7/config/libpython2.7.dylib (found version "2.7.8") 
-- Found PythonInterp: /sw/bin/python2.7 (found version "2.7.8") 
-- Boost version: 1.53.0
-- Found the following Boost libraries:
--   python
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE  
-- Could NOT find InChI in system locations (missing:  INCHI_LIBRARY INCHI_INCLUDE_DIR) 
CMake Warning at External/INCHI-API/CMakeLists.txt:43 (message):
  ** NO INCHI SOFTWARE FOUND

  InChI support will be turned off.  If you want to add InChI support, please
  follow the instructions inside $RDBASE/External/INCHI-API/README to
  download a copy of InChI software and then rerun cmake.


-- Boost version: 1.53.0
-- Found the following Boost libraries:
--   regex
-- Configuring done
-- Generating done
-- Build files have been written to: /sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/build
mv lib lib.junk
ln -s /sw/lib/rdkit  lib
cd ..
ln -s /sw/lib/rdkit  lib
cd $RDBASE/Code/PgSQL/rdkit
make
clang -I/usr/local/include -I/sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/Code -DRDKITVER='"007200"'   -I. -I. -I/sw/opt/postgresql-9.3/include/server -I/sw/opt/postgresql-9.3/include/internal -I/sw/lib/system-openssl/include -DHAVE_OPTRESET -fno-common -I/sw/include -I/sw/include/libxml2 -I/sw/include  -I/sw/include -fPIC -c -o rdkit_io.o rdkit_io.c 
clang -I/usr/local/include -I/sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/Code -DRDKITVER='"007200"'   -I. -I. -I/sw/opt/postgresql-9.3/include/server -I/sw/opt/postgresql-9.3/include/internal -I/sw/lib/system-openssl/include -DHAVE_OPTRESET -fno-common -I/sw/include -I/sw/include/libxml2 -I/sw/include  -I/sw/include -fPIC -c -o mol_op.o mol_op.c 
clang -I/usr/local/include -I/sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/Code -DRDKITVER='"007200"'   -I. -I. -I/sw/opt/postgresql-9.3/include/server -I/sw/opt/postgresql-9.3/include/internal -I/sw/lib/system-openssl/include -DHAVE_OPTRESET -fno-common -I/sw/include -I/sw/include/libxml2 -I/sw/include  -I/sw/include -fPIC -c -o bfp_op.o bfp_op.c 
clang -I/usr/local/include -I/sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/Code -DRDKITVER='"007200"'   -I. -I. -I/sw/opt/postgresql-9.3/include/server -I/sw/opt/postgresql-9.3/include/internal -I/sw/lib/system-openssl/include -DHAVE_OPTRESET -fno-common -I/sw/include -I/sw/include/libxml2 -I/sw/include  -I/sw/include -fPIC -c -o sfp_op.o sfp_op.c 
clang -I/usr/local/include -I/sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/Code -DRDKITVER='"007200"'   -I. -I. -I/sw/opt/postgresql-9.3/include/server -I/sw/opt/postgresql-9.3/include/internal -I/sw/lib/system-openssl/include -DHAVE_OPTRESET -fno-common -I/sw/include -I/sw/include/libxml2 -I/sw/include  -I/sw/include -fPIC -c -o rdkit_gist.o rdkit_gist.c 
clang -I/usr/local/include -I/sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/Code -DRDKITVER='"007200"'   -I. -I. -I/sw/opt/postgresql-9.3/include/server -I/sw/opt/postgresql-9.3/include/internal -I/sw/lib/system-openssl/include -DHAVE_OPTRESET -fno-common -I/sw/include -I/sw/include/libxml2 -I/sw/include  -I/sw/include -fPIC -c -o low_gist.o low_gist.c 
clang -I/usr/local/include -I/sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/Code -DRDKITVER='"007200"'   -I. -I. -I/sw/opt/postgresql-9.3/include/server -I/sw/opt/postgresql-9.3/include/internal -I/sw/lib/system-openssl/include -DHAVE_OPTRESET -fno-common -I/sw/include -I/sw/include/libxml2 -I/sw/include  -I/sw/include -fPIC -c -o guc.o guc.c 
clang -I/usr/local/include -I/sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/Code -DRDKITVER='"007200"'   -I. -I. -I/sw/opt/postgresql-9.3/include/server -I/sw/opt/postgresql-9.3/include/internal -I/sw/lib/system-openssl/include -DHAVE_OPTRESET -fno-common -I/sw/include -I/sw/include/libxml2 -I/sw/include  -I/sw/include -fPIC -c -o cache.o cache.c 
c++ -Wno-unused-function -I/usr/local/include -I/sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/Code -DRDKITVER='"007200"' -I/usr/local/include -I/sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/Code -DRDKITVER='"007200"'   -I. -I. -I/sw/opt/postgresql-9.3/include/server -I/sw/opt/postgresql-9.3/include/internal -I/sw/lib/system-openssl/include -DHAVE_OPTRESET -fno-common -I/sw/include -I/sw/include/libxml2 -I/sw/include  -I/sw/include -fPIC -c -o adapter.o adapter.cpp 
cp rdkit.sql91.in rdkit--3.4.sql
In file included from adapter.cpp:32:
In file included from /sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/Code/GraphMol/RDKitBase.h:22:
In file included from /sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/Code/GraphMol/Atom.h:23:
In file included from /sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/Code/Query/QueryObjects.h:19:
In file included from /sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/Code/Query/Query.h:19:
In file included from /sw/include/boost/smart_ptr.hpp:21:
In file included from /sw/include/boost/shared_ptr.hpp:17:
/sw/include/boost/smart_ptr/shared_ptr.hpp:491:41: warning: rvalue references are a C++11 extension [-Wc++11-extensions]
    shared_ptr( std::unique_ptr< Y, D > && r ): px( r.get() ), pn()
                                        ^
/sw/include/boost/smart_ptr/shared_ptr.hpp:556:51: warning: rvalue references are a C++11 extension [-Wc++11-extensions]
    shared_ptr & operator=( std::unique_ptr<Y, D> && r )
                                                  ^
/sw/include/boost/smart_ptr/shared_ptr.hpp:558:55: warning: rvalue references are a C++11 extension [-Wc++11-extensions]
        this_type( static_cast< std::unique_ptr<Y, D> && >( r ) ).swap(*this);
                                                      ^
3 warnings generated.
c++ -O2 -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv  -bundle -multiply_defined suppress -o rdkit.so rdkit_io.o mol_op.o bfp_op.o sfp_op.o rdkit_gist.o low_gist.o guc.o cache.o adapter.o -L/sw/opt/postgresql-9.3/lib -L/sw/lib/system-openssl/lib -F/System/Library/Frameworks -L/sw/lib -L/sw/lib -L/sw/lib  -L/sw/lib -Wl,-dead_strip_dylibs   -L/sw/build.build/rdkit-postgresql93-2014.03.1-3/RDKit_2014_03_1/lib -lChemTransforms_static -lFileParsers_static -lSmilesParse_static -lFingerprints_static -lSubgraphs_static -lDescriptors_static -lPartialCharges_static -lSubstructMatch_static -lGraphMol_static -lDataStructs_static -lDepictor_static -lRDGeometryLib_static -lRDGeneral_static -pthread -bundle_loader /sw/opt/postgresql-9.3/bin/postgres
clang: warning: argument unused during compilation: '-pthread'
ld: warning: directory not found for option '-L/sw/lib/system-openssl/lib'
/bin/rm -rf /sw/build.build/root-rdkit-postgresql93-2014.03.1-3
/bin/mkdir -p /sw/build.build/root-rdkit-postgresql93-2014.03.1-3/sw
/bin/mkdir -p /sw/build.build/root-rdkit-postgresql93-2014.03.1-3/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-rdkit-postgresql93-2014.03.1-3
sudo -u fink-bld [ENV] sh -c /tmp/fink.Ksxwi
/tmp/fink.VB2yZ
#!/bin/sh -efv
RDBASE=$PWD
export RDBASE
mkdir -p /sw/build.build/root-rdkit-postgresql93-2014.03.1-3/sw/opt/postgresql-9.3/lib
cd $RDBASE/Code/PgSQL/rdkit
make install DESTDIR=/sw/build.build/root-rdkit-postgresql93-2014.03.1-3
/bin/sh /sw/opt/postgresql-9.3/lib/pgxs/src/makefiles/../../config/install-sh -c -d '/sw/build.build/root-rdkit-postgresql93-2014.03.1-3/sw/opt/postgresql-9.3/lib'
/bin/sh /sw/opt/postgresql-9.3/lib/pgxs/src/makefiles/../../config/install-sh -c -d '/sw/build.build/root-rdkit-postgresql93-2014.03.1-3/sw/opt/postgresql-9.3/share/extension'
/bin/sh /sw/opt/postgresql-9.3/lib/pgxs/src/makefiles/../../config/install-sh -c -d '/sw/build.build/root-rdkit-postgresql93-2014.03.1-3/sw/opt/postgresql-9.3/share/extension'
/usr/bin/install -c -m 755  rdkit.so '/sw/build.build/root-rdkit-postgresql93-2014.03.1-3/sw/opt/postgresql-9.3/lib/rdkit.so'
/usr/bin/install -c -m 644 ./rdkit.control '/sw/build.build/root-rdkit-postgresql93-2014.03.1-3/sw/opt/postgresql-9.3/share/extension/'
/usr/bin/install -c -m 644 ./rdkit--3.4.sql  '/sw/build.build/root-rdkit-postgresql93-2014.03.1-3/sw/opt/postgresql-9.3/share/extension/'
sudo -u fink-bld [ENV] sh -c /tmp/fink.uE48_
/bin/rm -f /sw/build.build/root-rdkit-postgresql93-2014.03.1-3/sw/info/dir /sw/build.build/root-rdkit-postgresql93-2014.03.1-3/sw/info/dir.old /sw/build.build/root-rdkit-postgresql93-2014.03.1-3/sw/share/info/dir /sw/build.build/root-rdkit-postgresql93-2014.03.1-3/sw/share/info/dir.old
Reverting ownership of install dir to root
Writing control file...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-rdkit-postgresql93-2014.03.1-3 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci
dpkg-deb: building package `rdkit-postgresql93' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/rdkit-postgresql93_2014.03.1-3_darwin-x86_64.deb'.
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-rdkit-postgresql93-2014.03.1-3
(Reading database ... 62946 files and directories currently installed.)
Removing fink-buildlock-rdkit-postgresql93-2014.03.1-3 ...