printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild rdp-classifier 2>&1 The package 'rdp-classifier' will be built without being installed. Reading build dependency for rdp-classifier-2.7-2... Reading dependency for rdp-classifier-2.7-2... Reading build conflict for rdp-classifier-2.7-2... The following package will be rebuilt: rdp-classifier curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/rdp_classifier_2.7.zip % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 36.8M 0 162k 0 0 85581 0 0:07:31 0:00:01 0:07:30 85577 4 36.8M 4 1534k 0 0 526k 0 0:01:11 0:00:02 0:01:09 526k 4 36.8M 4 1812k 0 0 460k 0 0:01:21 0:00:03 0:01:18 460k 6 36.8M 6 2422k 0 0 492k 0 0:01:16 0:00:04 0:01:12 492k 9 36.8M 9 3573k 0 0 600k 0 0:01:02 0:00:05 0:00:57 709k 12 36.8M 12 4701k 0 0 679k 0 0:00:55 0:00:06 0:00:49 912k 13 36.8M 13 5125k 0 0 646k 0 0:00:58 0:00:07 0:00:51 715k 16 36.8M 16 6059k 0 0 679k 0 0:00:55 0:00:08 0:00:47 852k 18 36.8M 18 7053k 0 0 711k 0 0:00:53 0:00:09 0:00:44 926k 21 36.8M 21 7925k 0 0 724k 0 0:00:52 0:00:10 0:00:42 871k 21 36.8M 21 8102k 0 0 678k 0 0:00:55 0:00:11 0:00:44 677k 23 36.8M 23 8878k 0 0 687k 0 0:00:54 0:00:12 0:00:42 752k 25 36.8M 25 9630k 0 0 692k 0 0:00:54 0:00:13 0:00:41 715k 27 36.8M 27 10.2M 0 0 701k 0 0:00:53 0:00:14 0:00:39 681k 28 36.8M 28 10.5M 0 0 676k 0 0:00:55 0:00:15 0:00:40 571k 30 36.8M 30 11.1M 0 0 677k 0 0:00:55 0:00:16 0:00:39 675k 32 36.8M 32 11.9M 0 0 682k 0 0:00:55 0:00:17 0:00:38 671k 34 36.8M 34 12.6M 0 0 686k 0 0:00:54 0:00:18 0:00:36 672k 35 36.8M 35 13.0M 0 0 672k 0 0:00:56 0:00:19 0:00:37 585k 37 36.8M 37 13.7M 0 0 673k 0 0:00:55 0:00:20 0:00:35 665k 39 36.8M 39 14.5M 0 0 678k 0 0:00:55 0:00:21 0:00:34 679k 41 36.8M 41 15.1M 0 0 676k 0 0:00:55 0:00:22 0:00:33 652k 41 36.8M 41 15.2M 0 0 652k 0 0:00:57 0:00:23 0:00:34 521k 43 36.8M 43 15.9M 0 0 654k 0 0:00:57 0:00:24 0:00:33 583k 45 36.8M 45 16.6M 0 0 656k 0 0:00:57 0:00:25 0:00:32 581k 47 36.8M 47 17.4M 0 0 661k 0 0:00:56 0:00:26 0:00:30 591k 47 36.8M 47 17.5M 0 0 641k 0 0:00:58 0:00:27 0:00:31 480k 49 36.8M 49 18.1M 0 0 642k 0 0:00:58 0:00:28 0:00:30 597k 51 36.8M 51 18.8M 0 0 646k 0 0:00:58 0:00:29 0:00:29 609k 53 36.8M 53 19.6M 0 0 651k 0 0:00:57 0:00:30 0:00:27 628k 53 36.8M 53 19.8M 0 0 634k 0 0:00:59 0:00:32 0:00:27 491k 55 36.8M 55 20.4M 0 0 637k 0 0:00:59 0:00:32 0:00:27 613k 57 36.8M 57 21.2M 0 0 640k 0 0:00:58 0:00:33 0:00:25 625k 59 36.8M 59 21.9M 0 0 644k 0 0:00:58 0:00:34 0:00:24 627k 60 36.8M 60 22.4M 0 0 638k 0 0:00:59 0:00:35 0:00:24 560k 62 36.8M 62 23.1M 0 0 641k 0 0:00:58 0:00:36 0:00:22 686k 64 36.8M 64 23.8M 0 0 644k 0 0:00:58 0:00:37 0:00:21 693k 66 36.8M 66 24.6M 0 0 648k 0 0:00:58 0:00:38 0:00:20 705k 67 36.8M 67 24.9M 0 0 638k 0 0:00:59 0:00:39 0:00:20 603k 69 36.8M 69 25.5M 0 0 639k 0 0:00:58 0:00:40 0:00:18 644k 71 36.8M 71 26.2M 0 0 642k 0 0:00:58 0:00:41 0:00:17 646k 73 36.8M 73 27.0M 0 0 645k 0 0:00:58 0:00:42 0:00:16 652k 73 36.8M 73 27.2M 0 0 634k 0 0:00:59 0:00:43 0:00:16 524k 75 36.8M 75 27.8M 0 0 635k 0 0:00:59 0:00:44 0:00:15 609k 77 36.8M 77 28.6M 0 0 638k 0 0:00:59 0:00:45 0:00:14 633k 79 36.8M 79 29.3M 0 0 640k 0 0:00:58 0:00:46 0:00:12 626k 80 36.8M 80 29.8M 0 0 635k 0 0:00:59 0:00:48 0:00:11 552k 82 36.8M 82 30.3M 0 0 636k 0 0:00:59 0:00:48 0:00:11 654k 84 36.8M 84 30.9M 0 0 635k 0 0:00:59 0:00:49 0:00:10 636k 85 36.8M 85 31.5M 0 0 635k 0 0:00:59 0:00:50 0:00:09 599k 86 36.8M 86 31.7M 0 0 625k 0 0:01:00 0:00:51 0:00:09 485k 87 36.8M 87 32.3M 0 0 625k 0 0:01:00 0:00:52 0:00:08 531k 89 36.8M 89 32.9M 0 0 613k 0 0:01:01 0:00:54 0:00:07 429k 91 36.8M 91 33.6M 0 0 615k 0 0:01:01 0:00:55 0:00:06 452k 93 36.8M 93 34.2M 0 0 616k 0 0:01:01 0:00:56 0:00:05 457k 94 36.8M 94 34.8M 0 0 616k 0 0:01:01 0:00:57 0:00:04 536k 96 36.8M 96 35.4M 0 0 616k 0 0:01:01 0:00:58 0:00:03 537k 97 36.8M 97 36.0M 0 0 615k 0 0:01:01 0:00:59 0:00:02 633k 99 36.8M 99 36.6M 0 0 615k 0 0:01:01 0:01:00 0:00:01 615k 100 36.8M 100 36.8M 0 0 616k 0 0:01:01 0:01:01 --:--:-- 618k Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-rdp-classifier-2.7-2 /sw/build.build dpkg-deb: building package `fink-buildlock-rdp-classifier-2.7-2' in `/sw/build.build/fink-buildlock-rdp-classifier-2.7-2_2014.07.29-07.05.23_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-rdp-classifier-2.7-2_2014.07.29-07.05.23_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-rdp-classifier-2.7-2. (Reading database ... 4296 files and directories currently installed.) Unpacking fink-buildlock-rdp-classifier-2.7-2 (from .../fink-buildlock-rdp-classifier-2.7-2_2014.07.29-07.05.23_darwin-x86_64.deb) ... Setting up fink-buildlock-rdp-classifier-2.7-2 (2014.07.29-07.05.23) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.E_hG3 unzip -o /sw/src/rdp_classifier_2.7.zip Archive: /sw/src/rdp_classifier_2.7.zip creating: rdp_classifier_2.7/ creating: rdp_classifier_2.7/samplefiles/ inflating: rdp_classifier_2.7/samplefiles/new_trainset.fasta inflating: rdp_classifier_2.7/samplefiles/new_trainset_db_taxid.txt inflating: rdp_classifier_2.7/samplefiles/rRNAClassifier.properties inflating: rdp_classifier_2.7/samplefiles/Armatimonadetes.fasta inflating: rdp_classifier_2.7/samplefiles/USGA_2_4_B_trimmed.fasta inflating: rdp_classifier_2.7/samplefiles/Native_1_4_A_trimmed.fasta creating: rdp_classifier_2.7/lib/ inflating: rdp_classifier_2.7/lib/commons-io-2.4-javadoc.jar inflating: rdp_classifier_2.7/lib/junit-4.8.2-sources.jar inflating: rdp_classifier_2.7/lib/commons-cli-1.2-sources.jar inflating: rdp_classifier_2.7/lib/commons-io-2.4-sources.jar inflating: rdp_classifier_2.7/lib/junit-4.8.2-javadoc.jar inflating: rdp_classifier_2.7/lib/commons-io-2.4.jar inflating: rdp_classifier_2.7/lib/junit-4.8.2.jar inflating: rdp_classifier_2.7/lib/commons-cli-1.2.jar inflating: rdp_classifier_2.7/lib/commons-cli-1.2-javadoc.jar creating: rdp_classifier_2.7/dist/ creating: rdp_classifier_2.7/dist/lib/ inflating: rdp_classifier_2.7/dist/lib/TaxonomyTree.jar inflating: rdp_classifier_2.7/dist/lib/commons-io-2.4.jar inflating: rdp_classifier_2.7/dist/lib/commons-cli-1.2.jar inflating: rdp_classifier_2.7/dist/lib/ReadSeq.jar inflating: rdp_classifier_2.7/dist/classifier.jar inflating: rdp_classifier_2.7/LICENSE inflating: rdp_classifier_2.7/ivy.xml inflating: rdp_classifier_2.7/build.xml creating: rdp_classifier_2.7/src/ creating: rdp_classifier_2.7/src/edu/ creating: rdp_classifier_2.7/src/edu/msu/ creating: rdp_classifier_2.7/src/edu/msu/cme/ creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/ creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/taxatree/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/taxatree/UnifracTree.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/taxatree/utils/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/taxatree/utils/ClassifierTreeBuilder.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/unifrac/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/unifrac/Unifrac.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/unifrac/UnifracTreeBuilder.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/unifrac/UnifracTaxon.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/multicompare/ creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/multicompare/taxon/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/multicompare/taxon/MCTaxon.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/multicompare/MultiClassifier.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/multicompare/Main.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/multicompare/MCSampleResult.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/multicompare/MCSample.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/multicompare/gridware/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/multicompare/gridware/ClassifierGridware.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/multicompare/Reprocess.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/multicompare/visitors/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/multicompare/visitors/DefaultPrintVisitor.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/multicompare/visitors/EstimateSPrintVisitor.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/multicompare/MCSamplePrintUtil.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/Classifier.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/TrainingDataException.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/RawGenusWordConditionalProb.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/NameRankDupException.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/Taxonomy.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/LineageSequenceParser.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/LineageSequence.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/RawHierarchyTree.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/ClassifierTraineeMaker.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/TreeFactory.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/DecisionMaker.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/StatusCountUtils.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/ValidClassificationResultFacade.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/NBClassifier.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/Taxonomy.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/crossvalidate/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/crossvalidate/RdmSelectTaxon.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/crossvalidate/CrossValidateMain.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/crossvalidate/CrossValidate.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/CorrectAssignment.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/MainMovingWindow.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/Window.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/FindWindowFrame.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/WindowTester.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/SortedROCSet.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/leaveoneout/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/leaveoneout/LeaveOneOutTester.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/leaveoneout/LeaveOneOutTesterMain.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/TreeFactory.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/ValidationClassificationResult.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/AddLogs.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/StatusCount.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/validation/HierarchyTree.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/train/GoodWordIterator.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/TrainingInfo.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/GenusWordConditionalProb.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/rrnaclassifier/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/rrnaclassifier/ClassificationParser.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/ClassificationResult.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/io/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/io/TreeFileParser.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/io/LogWordPriorFileParser.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/io/ProbIndexFileParser.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/io/GenusWordProbFileParser.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/io/ClassificationResultFormatter.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/cli/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/cli/ClassifierMain.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/cli/CmdOptions.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/ClassifierCmd.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/RankAssignment.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/utils/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/utils/ClassifierFactory.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/utils/ClassifierSequence.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/utils/HierarchyVersion.java creating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/comparison/ inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/comparison/Score.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/comparison/Taxon.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/comparison/Ztable.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/comparison/SeqInfo.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/comparison/ComparisonBrowserNode.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/comparison/SeqErrorBean.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/comparison/SigCalculator.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/comparison/PixelCalculatorBean.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/comparison/ComparisonCmd.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/comparison/TaxonTree.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/comparison/ComparisonResultTreeSet.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/comparison/AbstractNode.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/comparison/UncNode.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/comparison/ComparisonBrowserBean.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/ShortSequenceException.java inflating: rdp_classifier_2.7/src/edu/msu/cme/rdp/classifier/HierarchyTree.java creating: rdp_classifier_2.7/nbproject/ inflating: rdp_classifier_2.7/nbproject/genfiles.properties inflating: rdp_classifier_2.7/nbproject/project.properties inflating: rdp_classifier_2.7/nbproject/build-impl.xml inflating: rdp_classifier_2.7/nbproject/project.xml inflating: rdp_classifier_2.7/README creating: rdp_classifier_2.7/test/ creating: rdp_classifier_2.7/test/edu/ creating: rdp_classifier_2.7/test/edu/msu/ creating: rdp_classifier_2.7/test/edu/msu/cme/ creating: rdp_classifier_2.7/test/edu/msu/cme/rdp/ creating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/ creating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/train/ inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/train/RawHierarchyTreeTest.java inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/train/GoodWordIteratorTest.java inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/train/RawSequenceParserTest.java inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/train/TreeFactoryTest.java creating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/train/validation/ inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/train/validation/GoodWordIteratorTest.java inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/train/validation/AddLogsTest.java inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/train/validation/TreeFactoryTest.java inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/train/validation/NBClassifierTest.java inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/train/validation/DecisionMakerTest.java inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/train/validation/SequenceParserTest.java inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/train/validation/ClassifierTestSuite.java inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/train/validation/HierarchyTreeTest.java inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/train/TrainSuite.java creating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/rrnaclassifier/ inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/rrnaclassifier/TrainingInfoTest.java inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/rrnaclassifier/ClassifierTest.java inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/rrnaclassifier/ParsedSequenceTest.java inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/rrnaclassifier/TreeFileParserTest.java inflating: rdp_classifier_2.7/test/edu/msu/cme/rdp/classifier/rrnaclassifier/HierarchyTreeTest.java creating: rdp_classifier_2.7/test/test/ creating: rdp_classifier_2.7/test/test/classifier/ inflating: rdp_classifier_2.7/test/test/classifier/test_bergeyTrainingTree.xml inflating: rdp_classifier_2.7/test/test/classifier/testDMtrain.fasta inflating: rdp_classifier_2.7/test/test/classifier/testNBClassifierSet.fasta inflating: rdp_classifier_2.7/test/test/classifier/testTaxonForQuerySeq.txt inflating: rdp_classifier_2.7/test/test/classifier/testTreeFile.xml inflating: rdp_classifier_2.7/test/test/classifier/sample2.fasta inflating: rdp_classifier_2.7/test/test/classifier/testDMtaxon.txt inflating: rdp_classifier_2.7/test/test/classifier/testSeqParser.fasta inflating: rdp_classifier_2.7/test/test/classifier/testTrainingSet.fasta inflating: rdp_classifier_2.7/test/test/classifier/testQuerySeq.fasta inflating: rdp_classifier_2.7/test/test/classifier/testLogWordPrior.txt inflating: rdp_classifier_2.7/test/test/classifier/testClassifier.properties inflating: rdp_classifier_2.7/test/test/classifier/testGenus_probList.txt inflating: rdp_classifier_2.7/test/test/classifier/testTaxon.txt inflating: rdp_classifier_2.7/test/test/classifier/testProbIndex.txt inflating: rdp_classifier_2.7/manifest.mf sudo -u fink-bld [ENV] sh -c /tmp/fink.h1iQs /bin/rm -rf /sw/build.build/root-rdp-classifier-2.7-2 /bin/mkdir -p /sw/build.build/root-rdp-classifier-2.7-2/sw /bin/mkdir -p /sw/build.build/root-rdp-classifier-2.7-2/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-rdp-classifier-2.7-2 sudo -u fink-bld [ENV] sh -c /tmp/fink.b8DXv mkdir -p /sw/build.build/root-rdp-classifier-2.7-2/sw/share/rdp-classifier cp -Rp dist/lib/* /sw/build.build/root-rdp-classifier-2.7-2/sw/share/rdp-classifier/ ln -s /sw/share/java/rdp-classifier/classifier.jar /sw/build.build/root-rdp-classifier-2.7-2/sw/share/rdp-classifier/classifier.jar mkdir -p /sw/build.build/root-rdp-classifier-2.7-2/sw/share/rdp-classifier_2.7/docs cp -Rp samplefiles /sw/build.build/root-rdp-classifier-2.7-2/sw/share/rdp-classifier_2.7/docs sudo -u fink-bld [ENV] sh -c /tmp/fink.rOYqA /usr/bin/install -d -m 700 /sw/build.build/root-rdp-classifier-2.7-2/sw/share/doc/rdp-classifier /bin/cp -r LICENSE /sw/build.build/root-rdp-classifier-2.7-2/sw/share/doc/rdp-classifier/ /bin/cp -r README /sw/build.build/root-rdp-classifier-2.7-2/sw/share/doc/rdp-classifier/ /bin/chmod -R go=u-w /sw/build.build/root-rdp-classifier-2.7-2/sw/share/doc/rdp-classifier /usr/bin/install -d -m 755 /sw/build.build/root-rdp-classifier-2.7-2/sw/share/java/rdp-classifier /usr/bin/install -c -p -m 644 dist/classifier.jar /sw/build.build/root-rdp-classifier-2.7-2/sw/share/java/rdp-classifier/ /bin/rm -f /sw/build.build/root-rdp-classifier-2.7-2/sw/info/dir /sw/build.build/root-rdp-classifier-2.7-2/sw/info/dir.old /sw/build.build/root-rdp-classifier-2.7-2/sw/share/info/dir /sw/build.build/root-rdp-classifier-2.7-2/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing package script postinst... Writing package script postrm... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-rdp-classifier-2.7-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `rdp-classifier' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/rdp-classifier_2.7-2_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-rdp-classifier-2.7-2 (Reading database ... 4297 files and directories currently installed.) Removing fink-buildlock-rdp-classifier-2.7-2 ...