printf '

' | fink --no-use-binary-dist --yes  --build-as-nobody rebuild rnabob 2>&1
The package 'rnabob' will be built without being installed.
Reading build dependency for rnabob-2.2-1...
Reading dependency for rnabob-2.2-1...
Reading build conflict for rnabob-2.2-1...
The following package will be rebuilt:
 rnabob
curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/rnabob-2.2.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
 40  129k   40 53333    0     0  23807      0  0:00:05  0:00:02  0:00:03 23809
100  129k  100  129k    0     0  56471      0  0:00:02  0:00:02 --:--:-- 56466
Setting runtime build-lock...
dpkg-deb -b /sw/build.build/root-fink-buildlock-rnabob-2.2-1 /sw/build.build
dpkg-deb: building package `fink-buildlock-rnabob-2.2-1' in `/sw/build.build/fink-buildlock-rnabob-2.2-1_2014.08.01-10.23.06_darwin-x86_64.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-rnabob-2.2-1_2014.08.01-10.23.06_darwin-x86_64.deb
Selecting previously deselected package fink-buildlock-rnabob-2.2-1.
(Reading database ... 4296 files and directories currently installed.)
Unpacking fink-buildlock-rnabob-2.2-1 (from .../fink-buildlock-rnabob-2.2-1_2014.08.01-10.23.06_darwin-x86_64.deb) ...
Setting up fink-buildlock-rnabob-2.2-1 (2014.08.01-10.23.06) ...

sudo -u fink-bld [ENV] sh -c /tmp/fink.Wuu3t
env LANG=C LC_ALL=C /sw/bin/tar  --no-same-owner --no-same-permissions -xvf /sw/src/rnabob-2.2.tar.gz
rnabob-2.2/
rnabob-2.2/rnabob.c
rnabob-2.2/patsearch.c
rnabob-2.2/rnabob.h
rnabob-2.2/r17.des
rnabob-2.2/pseudoknot.des
rnabob-2.2/trna.des
rnabob-2.2/F22B7.fa
rnabob-2.2/INSTALL
rnabob-2.2/README
rnabob-2.2/COPYING
rnabob-2.2/GNULICENSE
rnabob-2.2/rnabob.man
rnabob-2.2/squid.h
rnabob-2.2/sqfuncs.h
rnabob-2.2/rk.h
rnabob-2.2/selex.c
rnabob-2.2/msf.c
rnabob-2.2/alignio.c
rnabob-2.2/file.c
rnabob-2.2/hsregex.c
rnabob-2.2/seqencode.c
rnabob-2.2/sqerror.c
rnabob-2.2/sqio.c
rnabob-2.2/iupac.c
rnabob-2.2/revcomp.c
rnabob-2.2/rk.c
rnabob-2.2/sre_ctype.c
rnabob-2.2/sre_string.c
rnabob-2.2/getopt.c
rnabob-2.2/interleaved.c
rnabob-2.2/types.c
rnabob-2.2/sre_math.c
rnabob-2.2/Makefile
rnabob-2.2/rnabob.ps
sudo -u fink-bld [ENV] sh -c /tmp/fink.UCHEJ
/tmp/fink.G_PxO

cp Makefile Makefile-dist
grep -v HOME Makefile-dist > junk1
echo 'BINDIR="/sw/build.build/root-rnabob-2.2-1/sw"/bin' > Makefile
echo 'MANDIR="/sw/build.build/root-rnabob-2.2-1/sw"/share/man' >> Makefile
cat junk1 >> Makefile
rm -f junk1
perl -pi -e 's|getline|getline2|g' *.c
sudo -u fink-bld [ENV] sh -c /tmp/fink.b64dr
make
gcc  -O3   -c patsearch.c
gcc  -O3   -c rnabob.c
gcc  -O3   -c alignio.c
gcc  -O3   -c file.c
gcc  -O3   -c hsregex.c
gcc  -O3   -c interleaved.c
gcc  -O3   -c msf.c
gcc  -O3   -c selex.c
gcc  -O3   -c seqencode.c
gcc  -O3   -c sqerror.c
gcc  -O3   -c sqio.c
gcc  -O3   -c getopt.c
gcc  -O3   -c iupac.c
gcc  -O3   -c revcomp.c
gcc  -O3   -c rk.c
gcc  -O3   -c sre_ctype.c
gcc  -O3   -c sre_math.c
gcc  -O3   -c sre_string.c
gcc  -O3   -c types.c
gcc  -O3  -DRELEASE=2.2 -DRELEASEDATE="March 1999" -o rnabob patsearch.o rnabob.o alignio.o file.o hsregex.o interleaved.o msf.o selex.o seqencode.o sqerror.o sqio.o getopt.o iupac.o revcomp.o rk.o sre_ctype.o sre_math.o sre_string.o types.o -lm
/bin/rm -rf /sw/build.build/root-rnabob-2.2-1
/bin/mkdir -p /sw/build.build/root-rnabob-2.2-1/sw
/bin/mkdir -p /sw/build.build/root-rnabob-2.2-1/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-rnabob-2.2-1
sudo -u fink-bld [ENV] sh -c /tmp/fink.HtG1E
mkdir -p /sw/build.build/root-rnabob-2.2-1/sw/bin
mkdir -p /sw/build.build/root-rnabob-2.2-1/sw/share/man/man1
make install
cp rnabob   "/sw/build.build/root-rnabob-2.2-1/sw"/bin/
cp rnabob.man "/sw/build.build/root-rnabob-2.2-1/sw"/share/man/man1/rnabob.1
sudo -u fink-bld [ENV] sh -c /tmp/fink.VOYzV
/usr/bin/install -d -m 700 /sw/build.build/root-rnabob-2.2-1/sw/share/doc/rnabob
/bin/cp -r COPYING /sw/build.build/root-rnabob-2.2-1/sw/share/doc/rnabob/
/bin/cp -r GNULICENSE /sw/build.build/root-rnabob-2.2-1/sw/share/doc/rnabob/
/bin/cp -r README /sw/build.build/root-rnabob-2.2-1/sw/share/doc/rnabob/
/bin/cp -r rnabob.ps /sw/build.build/root-rnabob-2.2-1/sw/share/doc/rnabob/
/bin/chmod -R go=u-w /sw/build.build/root-rnabob-2.2-1/sw/share/doc/rnabob
/bin/rm -f /sw/build.build/root-rnabob-2.2-1/sw/info/dir /sw/build.build/root-rnabob-2.2-1/sw/info/dir.old /sw/build.build/root-rnabob-2.2-1/sw/share/info/dir /sw/build.build/root-rnabob-2.2-1/sw/share/info/dir.old
Reverting ownership of install dir to root
Writing control file...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-rnabob-2.2-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci
dpkg-deb: building package `rnabob' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/rnabob_2.2-1_darwin-x86_64.deb'.
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-rnabob-2.2-1
(Reading database ... 4297 files and directories currently installed.)
Removing fink-buildlock-rnabob-2.2-1 ...