printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild rnaview 2>&1 The package 'rnaview' will be built without being installed. Reading build dependency for rnaview-1.0-3... Reading dependency for rnaview-1.0-3... Reading build conflict for rnaview-1.0-3... The following package will be rebuilt: rnaview curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/RNAVIEW.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- 0:00:01 --:--:-- 0 30 539k 30 163k 0 0 98566 0 0:00:05 0:00:01 0:00:04 98545 100 539k 100 539k 0 0 234k 0 0:00:02 0:00:02 --:--:-- 234k Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-rnaview-1.0-3 /sw/build.build dpkg-deb: building package `fink-buildlock-rnaview-1.0-3' in `/sw/build.build/fink-buildlock-rnaview-1.0-3_2014.08.02-13.39.00_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-rnaview-1.0-3_2014.08.02-13.39.00_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-rnaview-1.0-3. (Reading database ... 4296 files and directories currently installed.) Unpacking fink-buildlock-rnaview-1.0-3 (from .../fink-buildlock-rnaview-1.0-3_2014.08.02-13.39.00_darwin-x86_64.deb) ... Setting up fink-buildlock-rnaview-1.0-3 (2014.08.02-13.39.00) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.0VQvr env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/RNAVIEW.tar.gz RNAVIEW/ RNAVIEW/BASEPARS/ RNAVIEW/BASEPARS/vrml_image.par RNAVIEW/BASEPARS/Atomic_A.pdb RNAVIEW/BASEPARS/Atomic_C.pdb RNAVIEW/BASEPARS/Atomic_G.pdb RNAVIEW/BASEPARS/Atomic_I.pdb RNAVIEW/BASEPARS/Atomic_P.pdb RNAVIEW/BASEPARS/Atomic_T.pdb RNAVIEW/BASEPARS/Atomic_U.pdb RNAVIEW/BASEPARS/misc_rna.par RNAVIEW/BASEPARS/ps_image.par RNAVIEW/BASEPARS/raster3d.par RNAVIEW/bin/ RNAVIEW/bin/rnaview RNAVIEW/doc/ RNAVIEW/doc/Makefile-old RNAVIEW/doc/README RNAVIEW/include/ RNAVIEW/include/rna_header.h RNAVIEW/include/nrutil.h RNAVIEW/include/rna.h RNAVIEW/include/rna_header.h~ RNAVIEW/include/vrml.h RNAVIEW/include/xml2ps.h RNAVIEW/obj/ RNAVIEW/rnaml2ps/ RNAVIEW/rnaml2ps/ps_image.par RNAVIEW/rnaml2ps/Makefile RNAVIEW/rnaml2ps/nrutil.c RNAVIEW/rnaml2ps/nrutil.h RNAVIEW/rnaml2ps/rnaml2ps.c RNAVIEW/rnaml2ps/rnaml2ps RNAVIEW/rnaml2ps/xml2ps.h RNAVIEW/src/ RNAVIEW/src/analyze.c RNAVIEW/src/Makefile RNAVIEW/src/fpair_sub.c RNAVIEW/src/fpair.c RNAVIEW/src/multiple.c RNAVIEW/src/nrutil.c RNAVIEW/src/pair_type.c RNAVIEW/src/pattern.c RNAVIEW/src/ps-xy-sub.c RNAVIEW/src/ps-xy.c RNAVIEW/src/rnaview.c RNAVIEW/src/rnaxml-new.c RNAVIEW/src/statistics.c RNAVIEW/src/vrml.c RNAVIEW/src/xml2ps.c RNAVIEW/src/rnaview.c~ RNAVIEW/test/ RNAVIEW/test/.#t RNAVIEW/test/test.pdb.out RNAVIEW/test/base_pair_statistics.out RNAVIEW/test/test.pdb.xml.ps RNAVIEW/test/test.pdb.ps RNAVIEW/test/test.pdb.xml RNAVIEW/test/tr0001.pdb.out RNAVIEW/test/test1.pdb RNAVIEW/test/tr0001.pdb RNAVIEW/test/tr0001.pdb.xml.ps RNAVIEW/test/tr0001.pdb.ps RNAVIEW/test/tr0001.pdb.wrl RNAVIEW/test/tr0001.pdb.xml RNAVIEW/test/url064.pdb RNAVIEW/test/urx053.pdb RNAVIEW/Makefile RNAVIEW/README sudo -u fink-bld [ENV] sh -c /tmp/fink.bWALl /tmp/fink.2vCdJ #!/bin/bash -efv /bin/rm -f bin/rnaview make cc -I./include -c ./src/rnaview.c -o obj/rnaview.o cc -I./include -c ./src/fpair.c -o obj/fpair.o cc -I./include -c ./src/fpair_sub.c -o obj/fpair_sub.o cc -I./include -c ./src/pair_type.c -o obj/pair_type.o cc -I./include -c ./src/nrutil.c -o obj/nrutil.o cc -I./include -c ./src/ps-xy.c -o obj/ps-xy.o cc -I./include -c ./src/ps-xy-sub.c -o obj/ps-xy-sub.o cc -I./include -c ./src/vrml.c -o obj/vrml.o ./src/rnaview.c:135:57: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fstat,"\nNumber of the total bases = %d\n", base_all); ~~ ^~~~~~~~ %ld ./src/rnaview.c:252:65: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("\nNumber of structure used for calculation = %d\n", n); ~~ ^ %ld ./src/rnaview.c:253:72: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fstat,"\nNumber of structure used for calculation = %d\n", n); ~~ ^ %ld ./src/rnaview.c:254:57: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fstat,"\nNumber of the total bases = %d\n", base_all); ~~ ^~~~~~~~ %ld ./src/rnaview.c:448:63: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("The best representative of NMR model = %d\n", model); ~~ ^~~~~ %ld ./src/rnaview.c:476:77: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fout,"REMARK NMR structrue: (the best model = %d ).\n",j); ~~ ^ %ld ./src/rnaview.c:706:40: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ChainID[ seidx[ib][1]], ResSeq[ seidx[ib][1] ], ResSeq[ seidx[ie][1] ]); ^~~~~~~~~~~~~~~~~~~~~~ ./src/rnaview.c:706:64: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ChainID[ seidx[ib][1]], ResSeq[ seidx[ib][1] ], ResSeq[ seidx[ie][1] ]); ^~~~~~~~~~~~~~~~~~~~~~ ./src/fpair.c:139:44: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] sprintf(work_num, "%d_%d", i, j); ~~ ^ %ld /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/fpair.c:139:47: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] sprintf(work_num, "%d_%d", i, j); ~~ ^ %ld /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/ps-xy-sub.c:54:23: warning: ./src/fpair_sub.c'&&' within '||' [-Wlogical-op-parentheses]: 196:24: warning: '&&' within '||' [-Wlogical-op-parentheses] for(i++;(i<=n)&& ~~~~~~^~ if (nlen >= 54 && !strncmp(str, "ATOM", 4) ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/ps-xy-sub.c:54:23: note: place parentheses around the '&&' expression to silence this warning for(i++;(i<=n)&& ^ ./src/fpair_sub.c:196:24: note: place parentheses around the '&&' expression to silence this warning if (nlen >= 54 && !strncmp(str, "ATOM", 4) ^ ( ) ./src/ps-xy.c:./src/fpair.c:197:52: 307:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] warning: format specifies type 'int' but the argument has type 'long' [-Wformat] nhelix,longest); ^~~~~~ work_num, ChainID[ir], ResSeq[ir], bseq[i], bseq[j], ^~~~~~~~~~ /usr/include/secure/_stdio.h:47:56:./src/ps-xy.c:307:19: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] nhelix,longest); ^~~~~~~ note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/fpair.c:198:29: warning: format specifies type 'int' but the argument has type 'long' [-Wformat]./src/fpair_sub.c:230:24: warning ResSeq[jr],ChainID[jr], type,pa_int, syn_i, syn_j); ^~~~~~~~~~ /usr/include/secure/_stdio.h:47:56: '&&' within '||' [-Wlogical-op-parentheses] : if (nlen >= 54 && !strncmp(str, "ATOM", 4) ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ note: expanded from macro 'sprintf'./src/fpair_sub.c :230:24: note: place parentheses around the '&&' expression to silence this warning if (nlen >= 54 && !strncmp(str, "ATOM", 4) ^ ( ) __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/fpair.c:222:60: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] work_num, ChainID[ir], ResSeq[ir], bseq[i], bseq[j], ^~~~~~~~~~ /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/fpair.c:223:37: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ResSeq[jr],ChainID[jr], type,pa_int, syn_i, syn_j); ^~~~~~~~~~ /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/fpair.c:250:60: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] work_num, ChainID[ir], ResSeq[ir], bseq[i], bseq[j], ^~~~~~~~~~ /usr/include/secure/_stdio.h:47./src/rnaview.c:833:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat]:56: note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/fpair.c:251:37: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] num_pair_tot,num_residue); ResSeq[jr],ChainID[jr], type,pa_int, syn_i, syn_j); ^~~~~~~~~~ /usr/include/secure/_stdio.h:47:56: ^~~~~~~~~~~~ ./src/rnaview.c:833:25: note: expanded from macro 'sprintf' warning: __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ format specifies type 'int' but the argument has type 'long' [-Wformat] num_pair_tot,num_residue); ^~~~~~~~~~~ ./src/rnaview.c:835:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] num_pair_tot,num_residue); ^~~~~~~~~~~~ ./src/rnaview.c:835:25: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] num_pair_tot,num_residue); ^~~~~~~~~~~ ./src/fpair.c:292:42: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ChainID[ir], ResSeq[ir], bseq[i], bseq[j],ResSeq[jr], ^~~~~~~~~~ ./src/fpair.c:292:71: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ChainID[ir], ResSeq[ir], bseq[i], bseq[j],ResSeq[jr], ^~~~~~~~~~ ./src/fpair.c:308:79: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf( "The total number of pairs %d is too large. ",num_bp); ~~ ^~~~~~ %ld ./src/fpair.c:338:44: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] sprintf(work_num, "%d_%d", i, j); ~~ ^ %ld /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/fpair.c:338:47: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] sprintf(work_num, "%d_%d", i, j); ~~ ^ %ld /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/fpair.c:350:33: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ResSeq[ir], bseq[i], bseq[j], ^~~~~~~~~~ ./src/fpair.c:351:33: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ResSeq[jr],ChainID[jr], syn_i, syn_j); ^~~~~~~~~~ ./src/fpair.c:408:56: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] work_num, ChainID[ir], ResSeq[ir], bseq[i], bseq[j], ^~~~~~~~~~ /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^./src/rnaview.c :1012:./src/fpair.c:409:3321: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] : i, AtomName[j], ResName[j], ChainID[j], ResSeq[j],xyz[j][1], ^ warning./src/rnaview.c:1012:: format specifies type 'int' but the argument has type 'long' [-Wformat] 61: ResSeq[jr],ChainID[jr], type,pa_int, syn_i, syn_j); ^~~~~~~~~~ /usr/include/secure/_stdio.h:47:56: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] note i, AtomName[j], ResName[j], ChainID[j], ResSeq[j],xyz[j][1], ^~~~~~~~~ : expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/fpair.c:430:56: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] work_num, ChainID[ir], ResSeq[ir], bseq[i], bseq[j], ^~~~~~~~~~ /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/fpair.c:431:33: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ResSeq[jr],ChainID[jr], type,pa_int,syn_i, syn_j); ^~~~~~~~~~ /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/fpair.c:453:56: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] work_num, ChainID[ir], ResSeq[ir], bseq[i], bseq[j], ^~~~~~~~~~ /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/fpair.c:454:33: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ResSeq[jr],ChainID[jr], type,pa_int,syn_i, syn_j); ^~~~~~~~~~ /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/rnaview.c:1144:76: warning: '&&' within '||' [-Wlogical-op-parentheses] } else if ((strstr(str_pair[i], "W/.")||strstr(str_pair[i], "./W"))&& ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./src/rnaview.c:1144:76: note: place parentheses around the '&&' expression to silence this warning } else if ((strstr(str_pair[i], "W/.")||strstr(str_pair[i], "./W"))&& ^ ./src/rnaview.c:1150:76: warning: '&&' within '||' [-Wlogical-op-parentheses] } else if ((strstr(str_pair[i], "H/.")||strstr(str_pair[i], "./H"))&& ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./src/rnaview.c:1150:76: note: place parentheses around the '&&' expression to silence this warning } else if ((strstr(str_pair[i], "H/.")||strstr(str_pair[i], "./H"))&& ^ ./src/rnaview.c:1156:76: warning: '&&' within '||' [-Wlogical-op-parentheses] } else if ((strstr(str_pair[i], "S/.")||strstr(str_pair[i], "./S"))&& ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./src/rnaview.c:1156:76: note: place parentheses around the '&&' expression to silence this warning } else if ((strstr(str_pair[i], "S/.")||strstr(str_pair[i], "./S"))&& ^ ./src/rnaview.c:1161:76: warning: '&&' within '||' [-Wlogical-op-parentheses] } else if ((strstr(str_pair[i], "./.")||strstr(str_pair[i], "./."))&& ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./src/rnaview.c:1161:76: note: place parentheses around the '&&' expression to silence this warning } else if ((strstr(str_pair[i], "./.")||strstr(str_pair[i], "./."))&& ^ cc -I./include -c ./src/rnaxml-new.c -o obj/rnaxml-new.o cc -I./include -c ./src/analyze.c -o obj/analyze.o cc -I./include -c ./src/pattern.c -o obj/pattern.o 2 warnings generated. cc -I./include -c ./src/xml2ps.c -o obj/xml2ps.o ./src/fpair.c:1332:29: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] j_order,marker_n, i - helix_idx[ii][1] + 1, b1, wc, b2); ^~~~~~~~ 1 warning generated. cc -I./include -c ./src/multiple.c -o obj/multiple.o 18 warnings generated. cc -I./include -c ./src/statistics.c -o obj/statistics.o ./src/fpair_sub.c:2219:61: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] sprintf(tmp, "%c: %d %c%s", ChainID[k], ResSeq[k], bseq[jr], ~~ ^~~~~~~~~ %ld /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/fpair_sub.c:2224:40: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] sprintf(tmp, "%d_",jr); ~~ ^~ %ld /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^ ./src/fpair_sub.c:2236:57: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fp,"%s| [%d %d] %s\n", pairnum,n_unique, inum_base, pairstr); ~~ ^~~~~~~~ %ld ./src/fpair_sub.c:2236:67: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fp,"%s| [%d %d] %s\n", pairnum,n_unique, inum_base, pairstr); ~~ ^~~~~~~~~ %ld ./src/fpair.c:2203:59: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("%5d %5d %4s - %4s %8.2f%8.2f\n", i, j, AtomName[m],AtomName[n],dd, dist); ~~~ ^ %5ld ./src/fpair.c:2203:62: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("%5d %5d %4s - %4s %8.2f%8.2f\n", i, j, AtomName[m],AtomName[n],dd, dist); ~~~ ^ %5ld ./src/rnaxml-new.c:252:31: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] tag8, i, POSITION_1_N[nres1]); ^ ./src/rnaxml-new.c:260:31: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] tag8, j, POSITION_1_N[nres2]); ^ ./src/rnaxml-new.c:351:51: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(xml,"%s\n", tag1, molID); ~~ ^~~~~ %ld ./src/rnaxml-new.c:355:81: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(xml,"%s\n",tag3, molID); ~~ ^~~~~ %ld ./src/rnaxml-new.c:357:47: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(xml,"%s%d\n",tag5, POSITION_1_N[ start ]); ~~ ^~~~~~~~~~~~~~~~~~~~~ %ld ./src/rnaxml-new.c:358:43: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(xml,"%s%d\n",tag5, POSITION_1_N[ end ]); ~~ ^~~~~~~~~~~~~~~~~~~ %ld ./src/rnaxml-new.c:363:101: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(xml,"%s\n",tag3, res_length); ~~ ^~~~~~~~~~ %ld ./src/analyze.c:117:41: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("num_bp in analysis %4d \n",num_bp); ~~~ ^~~~~~ %4ld ./src/rnaxml-new.c:367:29: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(xml, "%4d ",ResSeq[ seidx[i][1] ]); ~~~ ^~~~~~~~~~~~~~~~~~~~~ %4ld ./src/rnaxml-new.c:558:31: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] tag8, chain1, POSITION_1_N[helix_left]); ^~~~~~ ./src/rnaxml-new.c:565:31: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] tag8, chain2, POSITION_1_N[helix_right]); ^~~~~~ ./src/pattern.c:55:52: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("There are only %d base pairs!!\n", nl_tot); ~~ ^~~~~~ %ld ./src/pattern.c:78:65: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("String length %d is larger than (70)\n",n); ~~ ^./src/xml2ps.c:153:57 %ld: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("# xy: # of bases: # of O3' %d %d %d\n", nxy, nres, npo3); ~~ ^~~ %ld ./src/xml2ps.c:153:62: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("# xy: # of bases: # of O3' %d %d %d\n", nxy, nres, npo3); ~~ ^~~~ %ld ./src/xml2ps.c:153:68: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("# xy: # of bases: # of O3' %d %d %d\n", nxy, nres, npo3); ~~ ^~~~ %ld ./src/xml2ps.c:185:78: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("Number of base pairs (including tertiary interactions): %d\n", npair); ~~ ^~~~~ %ld ./src/xml2ps.c:186:55: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("Number of helix (anti-parallel): %d\n", nhelix); ~~ ^~~~~~ %ld ./src/xml2ps.c:187:47: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("Number of single strand: %d\n", nsing); ~~ ^~~~~ %ld 10 warnings generated. ./src/pattern.c:551:71: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fout_tmp,"\n Number of groups -----------%d-----------\n",npatt); ~~ ^~~~~ %ld ./src/pattern.c:562:17: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] idx_in_tmp[i]); ^~~~~~~~~~~~~ ./src/pattern.c:820:61: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fout,"Input type: %s (%4d)\n", type_tmp, user_type[ng]); ~~~ ^~~~~~~~~~~~~ %4ld ./src/pattern.c:821:46: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("Input type: %4d %s %4d \n",ng, type_tmp, user_type[ng]); ~~~ ^~ %4ld ./src/pattern.c:821:61: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("Input type: %4d %s %4d \n",ng, type_tmp, user_type[ng]); ~~~ ^~~~~~~~~~~~~ %4ld ./src/multiple.c:101:43: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fout,"%4d (%d) ", nmul+1, nstr); ~~~ ^~~~~~ %4ld ./src/multiple.c:101:51: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fout,"%4d (%d) ", nmul+1, nstr); ~~ ^~~~ %ld ./src/pattern.c:920:61: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fout,"Total number of matched patterns = %d \n",ns); ~~ ^~ %ld ./src/pattern.c:932:47: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ./src/xml2ps.c fprintf(fout,"-----------%d-----------\n",ns);: 849 ~~ ^~ %ld :104: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("Warnning! nxy (%d) not equal to nposit (%d)\n",nxy,nposit); ~~ ^~~ %ld ./src/xml2ps.c:849:108: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("Warnning! nxy (%d) not equal to nposit (%d)\n",nxy,nposit); ~~ ^~~~~~ %ld ./src/xml2ps.c:1025:108: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("Warnning! author seqence (%d) not equal to residue number (%d)\n", nseq, *nres); ~~ ^~~~ %ld ./src/xml2ps.c:1025:114: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("Warnning! author seqence (%d) not equal to residue number (%d)\n", nseq, *nres); ~~ ^~~~~ %ld 2 warnings generated. ./src/statistics.c:61:64: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs," A %4d(%5.1f) %4d(%5.1f) %4d(%5.1f)\n", A[0], ~~~ ^~~~ %4ld ./src/statistics.c:62:28: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] 100*(A[0])/sum, A[1], 100*(A[1])/sum, A[2], 100*(A[2])/sum); ^~~~ ./src/statistics.c:62:50: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] 100*(A[0])/sum, A[1], 100*(A[1])/sum, A[2], 100*(A[2])/sum); ^~~~ ./src/statistics.c:63:65: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs," G %4d(%5.1f) %4d(%5.1f) %4d(%5.1f)\n", G[0], ~~~ ^~~~ %4ld ./src/statistics.c:64:28: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] 100*(G[0])/sum, G[1], 100*(G[1])/sum, G[2], 100*(G[2])/sum); ^~~~ ./src/statistics.c:64:50: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] 100*(G[0])/sum, G[1], 100*(G[1])/sum, G[2], 100*(G[2])/sum); ^~~~ ./src/statistics.c:65:64: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs," U %4d(%5.1f) %4d(%5.1f) %4d(%5.1f)\n", U[0], ~~~ ^~~~ %4ld ./src/statistics.c:66:28: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] 100*(U[0])/sum, U[1], 100*(U[1])/sum, U[2], 100*(U[2])/sum); ^~~~ ./src/statistics.c:66:50: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] 100*(U[0])/sum, U[1], 100*(U[1])/sum, U[2], 100*(U[2])/sum); ^~~~ ./src/statistics.c:67:63: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs," C %4d(%5.1f) %4d(%5.1f) %4d(%5.1f)\n",C[0], ~~~ ^~~~ %4ld ./src/statistics.c:68:28: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] 100*(C[0])/sum, C[1], 100*(C[1])/sum, C[2], 100*(C[2])/sum); ^~~~ ./src/statistics.c:68:50: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] 100*(C[0])/sum, C[1], 100*(C[1])/sum, C[2], 100*(C[2])/sum); ^~~~ ./src/statistics.c:69:64: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs," T %4d(%5.1f) %4d(%5.1f) %4d(%5.1f)\n", T[0], ~~~ ^~~~ %4ld ./src/statistics.c:70:28: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] 100*(T[0])/sum, T[1], 100*(T[1])/sum, T[2], 100*(T[2])/sum); ^~~~ ./src/statistics.c:70:50: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] 100*(T[0])/sum, T[1], 100*(T[1])/sum, T[2], 100*(T[2])/sum); ^~~~ ./src/statistics.c:71:64: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs," P %4d(%5.1f) %4d(%5.1f) %4d(%5.1f)\n", P[0], ~~~ ^~~~ %4ld ./src/statistics.c:72:28: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] 100*(P[0])/sum, P[1], 100*(P[1])/sum, P[2], 100*(P[2])/sum); ^~~~ ./src/statistics.c:72:50: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] 100*(P[0])/sum, P[1], 100*(P[1])/sum, P[2], 100*(P[2])/sum); ^~~~ ./src/statistics.c:73:64: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs," T %4d(%5.1f) %4d(%5.1f) %4d(%5.1f)\n", I[0], ~~~ ^~~~ %4ld ./src/statistics.c:74:28: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] 100*(I[0])/sum, I[1], 100*(I[1])/sum, I[2], 100*(I[2])/sum); ^~~~ ./src/statistics.c:74:50: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] 100*(I[0])/sum, I[1], 100*(I[1])/sum, I[2], 100*(I[2])/sum); ^~~~ ./src/statistics.c:77:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] A[0]+G[0]+I[0], 100*(A[0]+G[0]+I[0])/sum, ^~~~~~~~~~~~~~ ./src/statistics.c:78:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] A[1]+G[1]+I[1], 100*(A[1]+G[1]+I[1])/sum, ^~~~~~~~~~~~~~ ./src/statistics.c:79:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] A[2]+G[2]+I[2], 100*(A[2]+G[2]+I[2])/sum ); ^~~~~~~~~~~~~~ ./src/statistics.c:81:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] U[0]+C[0]+T[0]+P[0], 100*(U[0]+C[0]+T[0]+P[0])/sum, ^~~~~~~~~~~~~~~~~~~ ./src/statistics.c:82:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] U[1]+C[1]+T[1]+P[1], 100*(U[1]+C[1]+T[1]+P[1])/sum, ^~~~~~~~~~~~~~~~~~~ ./src/statistics.c:83:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] U[2]+C[2]+T[2]+P[2], 100*(U[2]+C[2]+T[2]+P[2])/sum); ^~~~~~~~~~~~~~~~~~~ ./src/statistics.c:92:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] A[0], 100*(A[0])/sumA, A[1], 100*(A[1])/sumA, A[2], 100*(A[2])/sumA); ^~~~ ./src/statistics.c:92:35: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] A[0], 100*(A[0])/sumA, A[1], 100*(A[1])/sumA, A[2], 100*(A[2])/sumA); ^~~~ ./src/statistics.c:92:58: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] A[0], 100*(A[0])/sumA, A[1], 100*(A[1])/sumA, A[2], 100*(A[2])/sumA); ^~~~ ./src/statistics.c:94:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] G[0], 100*(G[0])/sumG, G[1], 100*(G[1])/sumG, G[2], 100*(G[2])/sumG); ^~~~ ./src/statistics.c:94:35: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] G[0], 100*(G[0])/sumG, G[1], 100*(G[1])/sumG, G[2], 100*(G[2])/sumG); ^~~~ ./src/statistics.c:94:58: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] G[0], 100*(G[0])/sumG, G[1], 100*(G[1])/sumG, G[2], 100*(G[2])/sumG); ^~~~ ./src/statistics.c:97:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] U[0], 100*(U[0])/sumU, U[1], 100*(U[1])/sumU, U[2], 100*(U[2])/sumU); ^~~~ ./src/statistics.c:97:35: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] U[0], 100*(U[0])/sumU, U[1], 100*(U[1])/sumU, U[2], 100*(U[2])/sumU); ^~~~ ./src/statistics.c:97:58: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] U[0], 100*(U[0])/sumU, U[1], 100*(U[1])/sumU, U[2], 100*(U[2])/sumU); ^~~~ ./src/statistics.c:99:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] C[0], 100*(C[0])/sumC, C[1], 100*(C[1])/sumC, C[2], 100*(C[2])/sumC); ^~~~ ./src/statistics.c:99:35: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] C[0], 100*(C[0])/sumC, C[1], 100*(C[1])/sumC, C[2], 100*(C[2])/sumC); ^~~~ ./src/statistics.c:99:58: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] C[0], 100*(C[0])/sumC, C[1], 100*(C[1])/sumC, C[2], 100*(C[2])/sumC); ^~~~ ./src/statistics.c:103:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] A[0]+G[0], 100*(A[0]+G[0])/(sumA+sumG), ^~~~~~~~~ ./src/statistics.c:104:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] A[1]+G[1], 100*(A[1]+G[1])/(sumA+sumG), ^~~~~~~~~ ./src/statistics.c:105:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] A[2]+G[2], 100*(A[2]+G[2])/(sumA+sumG)); ^~~~~~~~~ ./src/statistics.c:109:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] U[0]+C[0], 100*(U[0]+C[0])/(sumU+sumC), ^~~~~~~~~ ./src/statistics.c:110:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] U[1]+C[1], 100*(U[1]+C[1])/(sumU+sumC), ^~~~~~~~~ ./src/statistics.c:111:12: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] U[2]+C[2], 100*(U[2]+C[2])/(sumU+sumC)); ^~~~~~~~~ ./src/statistics.c:143:67: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs,"Distributions from total number of pairs (%d):\n",sum); ~~ ^~~ %ld ./src/statistics.c:146:61: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs,"The Standard W.C pairs = %5d(%4.1f%%)\n\n", type_stat_tot[1], percent); ~~~ ^~~~~~~~~~~~~~~~ %5ld ./src/statistics.c:151:36: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs,"%4d(%4.1f%%)", type_stat_tot[j], percent); ~~~ ^~~~~~~~~~~~~~~~ %4ld ./src/statistics.c:158:36: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs,"%4d(%4.1f%%)", type_stat_tot[j], percent); ~~~ ^~~~~~~~~~~~~~~~ %4ld ./src/statistics.c:183:31: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs,"%5d", pair_stat[j][i]); ~~~ ^~~~~~~~~~~~~~~ %5ld ./src/statistics.c:190:34: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs,"%5d%5.1f\n", sum_16, 100*sum_16/sum2); ~~~ ^~~~~~ %5ld ./src/statistics.c:198:27: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs,"%5d", sum_32); ~~~ ^~~~~~ %5ld ./src/statistics.c:228:31: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs,"%5d", pair_stat[j][i]); ~~~ ^~~~~~~~~~~~~~~ %5ld ./src/statistics.c:235:34: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs,"%5d%5.1f\n", sum_16, 100*sum_16/sum2); ~~~ ^~~~~~ %5ld ./src/statistics.c:250:27: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fs,"%5d", sum_32); ~~~ ^~~~~~ %5ld ./src/xml2ps.c:1617:43: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] xy1[1], xy1[2]-4, author_seq[j]); ^~~~~~~~~~~~~ ./src/xml2ps.c:1621:44: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] xy2[1], xy2[2]-4, author_seq[j]); ^~~~~~~~~~~~~ ./src/xml2ps.c:1654:39: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] xy1[1], xy1[2]-4, author_seq[k1]); ^~~~~~~~~~~~~~ ./src/xml2ps.c:1658:39: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] xy1[1], xy1[2]-4, author_seq[k1]); ^~~~~~~~~~~~~~ ./src/xml2ps.c:1662:39: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] xy1[1], xy1[2]-4, author_seq[k1]); ^~~~~~~~~~~~~~ ./src/xml2ps.c:1666:38: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] xy1[1], xy1[2]-4,author_seq[k1]); ^~~~~~~~~~~~~~ ./src/xml2ps.c:1674:39: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] xy2[1], xy2[2]-4, author_seq[k1]); ^~~~~~~~~~~~~~ ./src/xml2ps.c:1678:39: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] xy2[1], xy2[2]-4, author_seq[k1]); ^~~~~~~~~~~~~~ ./src/xml2ps.c:1682:39: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] xy2[1], xy2[2]-4, author_seq[k1]); ^~~~~~~~~~~~~~ ./src/xml2ps.c:1686:39: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] xy2[1], xy2[2]-4, author_seq[k1]); ^~~~~~~~~~~~~~ ./src/statistics.c:438:17: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ade[0],pa[0], ade[1],pa[1],ade[2],pa[2],ade[3],pa[3]); ^~~~~~ ./src/statistics.c:438:31: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ade[0],pa[0], ade[1],pa[1],ade[2],pa[2],ade[3],pa[3]); ^~~~~~ ./src/statistics.c:438:44: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ade[0],pa[0], ade[1],pa[1],ade[2],pa[2],ade[3],pa[3]); ^~~~~~ ./src/statistics.c:438:57: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ade[0],pa[0], ade[1],pa[1],ade[2],pa[2],ade[3],pa[3]); ^~~~~~ ./src/statistics.c:440:17: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] cyt[0],pc[0],cyt[1],pc[1],cyt[2],pc[2],cyt[3],pc[3]); ^~~~~~ ./src/statistics.c:440:30: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] cyt[0],pc[0],cyt[1],pc[1],cyt[2],pc[2],cyt[3],pc[3]); ^~~~~~ ./src/statistics.c:440:43: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] cyt[0],pc[0],cyt[1],pc[1],cyt[2],pc[2],cyt[3],pc[3]); ^~~~~~ ./src/statistics.c:440:56: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] cyt[0],pc[0],cyt[1],pc[1],cyt[2],pc[2],cyt[3],pc[3]); ^~~~~~ ./src/statistics.c:442:17: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] gua[0],pg[0],gua[1],pg[1],gua[2],pg[2],gua[3],pg[3]); ^~~~~~ ./src/statistics.c:442:30: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] gua[0],pg[0],gua[1],pg[1],gua[2],pg[2],gua[3],pg[3]); ^~~~~~ ./src/statistics.c:442:43: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] gua[0],pg[0],gua[1],pg[1],gua[2],pg[2],gua[3],pg[3]); ^~~~~~ ./src/statistics.c:442:56: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] gua[0],pg[0],gua[1],pg[1],gua[2],pg[2],gua[3],pg[3]); ^~~~~~ ./src/statistics.c:444:17: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ura[0],pu[0],ura[1],pu[1],ura[2],pu[2],ura[3],pu[3]); ^~~~~~ ./src/statistics.c:444:30: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ura[0],pu[0],ura[1],pu[1],ura[2],pu[2],ura[3],pu[3]); ^~~~~~ ./src/statistics.c:444:43: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ura[0],pu[0],ura[1],pu[1],ura[2],pu[2],ura[3],pu[3]); ^~~~~~ ./src/statistics.c:444:56: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] ura[0],pu[0],ura[1],pu[1],ura[2],pu[2],ura[3],pu[3]); ^~~~~~ 9 warnings generated. ./src/statistics.c:801:30: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fout, "%9d", type_stat[j]); ~~~ ^~~~~~~~~~~~ %9ld ./src/statistics.c:805:30: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fout, "%9d", type_stat[j]); ~~~ ^~~~~~~~~~~~ %9ld ./src/statistics.c:809:35: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fout, "%9d%9d\n", type_stat[14], type_stat[15]); ~~~ ^~~~~~~~~~~~~ %9ld ./src/statistics.c:809:50: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] fprintf(fout, "%9d%9d\n", type_stat[14], type_stat[15]); ~~~ ^~~~~~~~~~~~~ %9ld ./src/statistics.c:984:37: warning: format specifies type 'int *' but the argument has type 'long *' [-Wformat] sscanf(str_tmp, "%d%d", &n1, &n2); ~~ ^~~ %ld ./src/statistics.c:984:42: warning: format specifies type 'int *' but the argument has type 'long *' [-Wformat] sscanf(str_tmp, "%d%d", &n1, &n2); ~~ ^~~ %ld ./src/xml2ps.c:2270:5: warning: implicit declaration of function 'get_BDIR' is invalid in C99 [-Wimplicit-function-declaration] get_BDIR(BDIR, ps_image_par); ^ 24 warnings generated. 6 warnings generated. 77 warnings generated. 21 warnings generated. 1 warning generated. cc -I./include -o bin/rnaview ./obj/rnaview.o ./obj/fpair.o ./obj/fpair_sub.o ./obj/pair_type.o ./obj/nrutil.o ./obj/ps-xy.o ./obj/ps-xy-sub.o ./obj/vrml.o ./obj/rnaxml-new.o ./obj/analyze.o ./obj/pattern.o ./obj/xml2ps.o ./obj/multiple.o ./obj/statistics.o -L/sw/lib -lm /bin/rm -f *.o */*.o /bin/rm -rf /sw/build.build/root-rnaview-1.0-3 /bin/mkdir -p /sw/build.build/root-rnaview-1.0-3/sw /bin/mkdir -p /sw/build.build/root-rnaview-1.0-3/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-rnaview-1.0-3 sudo -u fink-bld [ENV] sh -c /tmp/fink._dj_e /tmp/fink.oNtbV #!/bin/bash -efv mkdir -p /sw/build.build/root-rnaview-1.0-3/sw/bin cp bin/rnaview /sw/build.build/root-rnaview-1.0-3/sw/bin/rnaview mkdir -p /sw/build.build/root-rnaview-1.0-3/sw/share/rnaview cp -r BASEPARS doc rnaml2ps /sw/build.build/root-rnaview-1.0-3/sw/share/rnaview/. sudo -u fink-bld [ENV] sh -c /tmp/fink.hb0hh /usr/bin/install -d -m 700 /sw/build.build/root-rnaview-1.0-3/sw/share/doc/rnaview /bin/cp -r README /sw/build.build/root-rnaview-1.0-3/sw/share/doc/rnaview/ /bin/chmod -R go=u-w /sw/build.build/root-rnaview-1.0-3/sw/share/doc/rnaview /usr/bin/install -d -m 755 /sw/build.build/root-rnaview-1.0-3/sw/etc/profile.d echo "setenv RNAVIEW '/sw/share/rnaview'" >> /sw/build.build/root-rnaview-1.0-3/sw/etc/profile.d/rnaview.csh.env echo "export RNAVIEW='/sw/share/rnaview'" >> /sw/build.build/root-rnaview-1.0-3/sw/etc/profile.d/rnaview.sh.env /usr/bin/touch /sw/build.build/root-rnaview-1.0-3/sw/etc/profile.d/rnaview.csh /usr/bin/touch /sw/build.build/root-rnaview-1.0-3/sw/etc/profile.d/rnaview.sh /bin/cat /sw/build.build/root-rnaview-1.0-3/sw/etc/profile.d/rnaview.csh >> /sw/build.build/root-rnaview-1.0-3/sw/etc/profile.d/rnaview.csh.env /bin/cat /sw/build.build/root-rnaview-1.0-3/sw/etc/profile.d/rnaview.sh >> /sw/build.build/root-rnaview-1.0-3/sw/etc/profile.d/rnaview.sh.env /bin/mv -f /sw/build.build/root-rnaview-1.0-3/sw/etc/profile.d/rnaview.csh.env /sw/build.build/root-rnaview-1.0-3/sw/etc/profile.d/rnaview.csh /bin/mv -f /sw/build.build/root-rnaview-1.0-3/sw/etc/profile.d/rnaview.sh.env /sw/build.build/root-rnaview-1.0-3/sw/etc/profile.d/rnaview.sh /bin/chmod 755 /sw/build.build/root-rnaview-1.0-3/sw/etc/profile.d/rnaview.* /bin/rm -f /sw/build.build/root-rnaview-1.0-3/sw/info/dir /sw/build.build/root-rnaview-1.0-3/sw/info/dir.old /sw/build.build/root-rnaview-1.0-3/sw/share/info/dir /sw/build.build/root-rnaview-1.0-3/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-rnaview-1.0-3 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `rnaview' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/rnaview_1.0-3_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-rnaview-1.0-3 (Reading database ... 4297 files and directories currently installed.) Removing fink-buildlock-rnaview-1.0-3 ...