printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild sparky-py27 2>&1 The package 'sparky-py27' will be built without being installed. Reading build dependency for sparky-py27-3.115-1004... Reading dependency for sparky-py27-3.115-1004... Reading build conflict for sparky-py27-3.115-1004... The package 'python27' will be installed. Reading dependency for python27-2.7.8-1... Reading runtime dependency for python27-2.7.8-1... The package 'tcltk-dev' will be installed. Reading dependency for tcltk-dev-8.6.1-104... Reading runtime dependency for tcltk-dev-8.6.1-104... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'python27-shlibs' will be installed. Reading dependency for python27-shlibs-2.7.8-1... Reading runtime dependency for python27-shlibs-2.7.8-1... The package 'blt-shlibs' will be installed. Reading dependency for blt-shlibs-2.4z-160... Reading runtime dependency for blt-shlibs-2.4z-160... The package 'db53-aes-shlibs' will be installed. Reading dependency for db53-aes-shlibs-5.3.21-2... Reading runtime dependency for db53-aes-shlibs-5.3.21-2... The package 'expat1-shlibs' will be installed. Reading dependency for expat1-shlibs-2.1.0-1... Reading runtime dependency for expat1-shlibs-2.1.0-1... The package 'gdbm3-shlibs' will be installed. Reading dependency for gdbm3-shlibs-1.8.3-4... Reading runtime dependency for gdbm3-shlibs-1.8.3-4... The package 'libffi6-shlibs' will be installed. Reading dependency for libffi6-shlibs-3.1-1... Reading runtime dependency for libffi6-shlibs-3.1-1... The package 'libncursesw5-shlibs' will be installed. Reading dependency for libncursesw5-shlibs-5.9-20110507-1... Reading runtime dependency for libncursesw5-shlibs-5.9-20110507-1... The package 'openssl100-shlibs' will be installed. Reading dependency for openssl100-shlibs-1.0.1h-1... Reading runtime dependency for openssl100-shlibs-1.0.1h-1... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'sqlite3-shlibs' will be installed. Reading dependency for sqlite3-shlibs-3.8.3.1-1... Reading runtime dependency for sqlite3-shlibs-3.8.3.1-1... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The package 'fontconfig2-shlibs' will be installed. Reading dependency for fontconfig2-shlibs-2.10.2-1... Reading runtime dependency for fontconfig2-shlibs-2.10.2-1... The package 'xft2-shlibs' will be installed. Reading dependency for xft2-shlibs-2.2.0-3... Reading runtime dependency for xft2-shlibs-2.2.0-3... The package 'libjpeg9-shlibs' will be installed. Reading dependency for libjpeg9-shlibs-9a-1... Reading runtime dependency for libjpeg9-shlibs-9a-1... The package 'fontconfig-config' will be installed. Reading dependency for fontconfig-config-2.10.2-1... Reading runtime dependency for fontconfig-config-2.10.2-1... The following package will be rebuilt: sparky-py27 The following 18 additional packages will be installed: blt-shlibs db53-aes-shlibs expat1-shlibs fontconfig-config fontconfig2-shlibs gdbm3-shlibs libffi6-shlibs libjpeg9-shlibs libncursesw5-shlibs openssl100-shlibs python27 python27-shlibs readline6-shlibs sqlite3-shlibs tcltk tcltk-dev tcltk-shlibs xft2-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://www.cgl.ucsf.edu/home/sparky/distrib-3.115/sparky-source-3.115.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 29 4007k 29 1163k 0 0 762k 0 0:00:05 0:00:01 0:00:04 762k 53 4007k 53 2125k 0 0 852k 0 0:00:04 0:00:02 0:00:02 852k 86 4007k 86 3472k 0 0 952k 0 0:00:04 0:00:03 0:00:01 952k 100 4007k 100 4007k 0 0 925k 0 0:00:04 0:00:04 --:--:-- 925k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/crypto/db53-aes-shlibs_5.3.21-2_darwin-x86_64.deb Selecting previously deselected package db53-aes-shlibs. (Reading database ... 4708 files and directories currently installed.) Unpacking db53-aes-shlibs (from .../db53-aes-shlibs_5.3.21-2_darwin-x86_64.deb) ... Setting up db53-aes-shlibs (5.3.21-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb Selecting previously deselected package expat1-shlibs. (Reading database ... 4718 files and directories currently installed.) Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ... Setting up expat1-shlibs (2.1.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig-config_2.10.2-1_darwin-x86_64.deb Selecting previously deselected package fontconfig2-shlibs. (Reading database ... 4723 files and directories currently installed.) Unpacking fontconfig2-shlibs (from .../fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.10.2-1_darwin-x86_64.deb) ... Setting up fontconfig-config (2.10.2-1) ... Setting up fontconfig2-shlibs (2.10.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/gdbm3-shlibs_1.8.3-4_darwin-x86_64.deb Selecting previously deselected package gdbm3-shlibs. (Reading database ... 4808 files and directories currently installed.) Unpacking gdbm3-shlibs (from .../gdbm3-shlibs_1.8.3-4_darwin-x86_64.deb) ... Setting up gdbm3-shlibs (1.8.3-4) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libffi6-shlibs_3.1-1_darwin-x86_64.deb Selecting previously deselected package libffi6-shlibs. (Reading database ... 4816 files and directories currently installed.) Unpacking libffi6-shlibs (from .../libffi6-shlibs_3.1-1_darwin-x86_64.deb) ... Setting up libffi6-shlibs (3.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjpeg9-shlibs_9a-1_darwin-x86_64.deb Selecting previously deselected package libjpeg9-shlibs. (Reading database ... 4817 files and directories currently installed.) Unpacking libjpeg9-shlibs (from .../libjpeg9-shlibs_9a-1_darwin-x86_64.deb) ... Setting up libjpeg9-shlibs (9a-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/libncursesw5-shlibs_5.9-20110507-1_darwin-x86_64.deb Selecting previously deselected package libncursesw5-shlibs. (Reading database ... 4820 files and directories currently installed.) Unpacking libncursesw5-shlibs (from .../libncursesw5-shlibs_5.9-20110507-1_darwin-x86_64.deb) ... Setting up libncursesw5-shlibs (5.9-20110507-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb Selecting previously deselected package openssl100-shlibs. (Reading database ... 4831 files and directories currently installed.) Unpacking openssl100-shlibs (from .../openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb) ... Setting up openssl100-shlibs (1.0.1h-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb Selecting previously deselected package readline6-shlibs. (Reading database ... 4852 files and directories currently installed.) Unpacking readline6-shlibs (from .../readline6-shlibs_6.3.6-1_darwin-x86_64.deb) ... Setting up readline6-shlibs (6.3.6-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/database/sqlite3-shlibs_3.8.3.1-1_darwin-x86_64.deb Selecting previously deselected package sqlite3-shlibs. (Reading database ... 4863 files and directories currently installed.) Unpacking sqlite3-shlibs (from .../sqlite3-shlibs_3.8.3.1-1_darwin-x86_64.deb) ... Setting up sqlite3-shlibs (3.8.3.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xft2-shlibs_2.2.0-3_darwin-x86_64.deb Selecting previously deselected package xft2-shlibs. (Reading database ... 4867 files and directories currently installed.) Unpacking xft2-shlibs (from .../xft2-shlibs_2.2.0-3_darwin-x86_64.deb) ... Setting up xft2-shlibs (2.2.0-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-dev_8.6.1-104_darwin-x86_64.deb /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb Selecting previously deselected package tcltk-dev. (Reading database ... 4876 files and directories currently installed.) Unpacking tcltk-dev (from .../tcltk-dev_8.6.1-104_darwin-x86_64.deb) ... Selecting previously deselected package tcltk. Unpacking tcltk (from .../tcltk_8.6.1-104_darwin-x86_64.deb) ... Selecting previously deselected package tcltk-shlibs. Unpacking tcltk-shlibs (from .../tcltk-shlibs_8.6.1-104_darwin-x86_64.deb) ... Setting up tcltk-shlibs (8.6.1-104) ... Setting up tcltk (8.6.1-104) ... Setting up tcltk-dev (8.6.1-104) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/blt-shlibs_2.4z-160_darwin-x86_64.deb Selecting previously deselected package blt-shlibs. (Reading database ... 6672 files and directories currently installed.) Unpacking blt-shlibs (from .../blt-shlibs_2.4z-160_darwin-x86_64.deb) ... Setting up blt-shlibs (2.4z-160) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/python27_2.7.8-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/python27-shlibs_2.7.8-1_darwin-x86_64.deb Selecting previously deselected package python27. (Reading database ... 6678 files and directories currently installed.) Unpacking python27 (from .../python27_2.7.8-1_darwin-x86_64.deb) ... Selecting previously deselected package python27-shlibs. Unpacking python27-shlibs (from .../python27-shlibs_2.7.8-1_darwin-x86_64.deb) ... Setting up python27-shlibs (2.7.8-1) ... Setting up python27 (2.7.8-1) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-sparky-py27-3.115-1004 /sw/build.build dpkg-deb: building package `fink-buildlock-sparky-py27-3.115-1004' in `/sw/build.build/fink-buildlock-sparky-py27-3.115-1004_2014.07.30-20.14.05_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-sparky-py27-3.115-1004_2014.07.30-20.14.05_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-sparky-py27-3.115-1004. (Reading database ... 13889 files and directories currently installed.) Unpacking fink-buildlock-sparky-py27-3.115-1004 (from .../fink-buildlock-sparky-py27-3.115-1004_2014.07.30-20.14.05_darwin-x86_64.deb) ... Setting up fink-buildlock-sparky-py27-3.115-1004 (2014.07.30-20.14.05) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.VmNt_ env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/sparky-source-3.115.tar.gz sparky/bin/ sparky/bin/autoassign_test sparky/bin/distrib-cgl sparky/bin/distrib-klee sparky/bin/distrib-nmr sparky/bin/distrib-www sparky/bin/html2ps sparky/bin/htmlcat sparky/bin/lookfor sparky/bin/make-source sparky/bin/make-source~ sparky/bin/make-sparky sparky/bin/make-sparky-debug sparky/bin/make-sparky-win32 sparky/bin/netscape-mac sparky/bin/nmrhosts sparky/bin/nmrhosts~ sparky/bin/pylinks sparky/bin/rcslock sparky/bin/rcsview.py sparky/bin/rdist-cgl sparky/bin/rdist-klee sparky/bin/rdist-nmr sparky/bin/rdist-nmr~ sparky/bin/rdist-www sparky/bin/rdist-www~ sparky/bin/repl sparky/bin/replace sparky/bin/sparky sparky/bin/sparky-debug sparky/bin/sparky-solaris sparky/bin/sparky-solaris~ sparky/bin/sparky-win32.bat sparky/bin/sparky.~3.25~ sparky/bin/splinks sparky/c++/ sparky/c++/_tkinter.c sparky/c++/assigncopy.cc sparky/c++/assigncopy.h sparky/c++/assignguess.cc sparky/c++/assignguess.h sparky/c++/atom.cc sparky/c++/atom.h sparky/c++/attacheddata.cc sparky/c++/attacheddata.h sparky/c++/axismap.cc sparky/c++/axismap.h sparky/c++/binaryIO.cc sparky/c++/binaryIO.h sparky/c++/blockfile.cc sparky/c++/blockfile.h sparky/c++/bruk2ucsf.cc sparky/c++/brukerfile.cc sparky/c++/brukerfile.h sparky/c++/classes sparky/c++/color.cc sparky/c++/color.h sparky/c++/command.cc sparky/c++/command.h sparky/c++/condition.cc sparky/c++/condition.h sparky/c++/constant.h sparky/c++/contour.cc sparky/c++/contour.h sparky/c++/contourplane.cc sparky/c++/contourplane.h sparky/c++/contourstream.cc sparky/c++/contourstream.h sparky/c++/crosspeak.cc sparky/c++/crosspeak.h sparky/c++/dataregion.cc sparky/c++/dataregion.h sparky/c++/felixfile.cc sparky/c++/felixfile.h sparky/c++/format.cc sparky/c++/format.h sparky/c++/grid.cc sparky/c++/grid.h sparky/c++/group.cc sparky/c++/group.h sparky/c++/integrate.cc sparky/c++/integrate.h sparky/c++/label.cc sparky/c++/label.h sparky/c++/line.cc sparky/c++/line.h sparky/c++/linefit.cc sparky/c++/linefit.h sparky/c++/list.cc sparky/c++/list.h sparky/c++/lusolve.cc sparky/c++/lusolve.h sparky/c++/main-debug.cc sparky/c++/main.cc sparky/c++/Makefile sparky/c++/Makefile.dep sparky/c++/mathconst.h sparky/c++/matrix2ucsf.cc sparky/c++/memalloc.cc sparky/c++/memalloc.h sparky/c++/memcache.cc sparky/c++/memcache.h sparky/c++/model.cc sparky/c++/model.h sparky/c++/molecule.cc sparky/c++/molecule.h sparky/c++/nihfile.cc sparky/c++/nihfile.h sparky/c++/nmrdata.cc sparky/c++/nmrdata.h sparky/c++/notifier.cc sparky/c++/notifier.h sparky/c++/num.cc sparky/c++/num.h sparky/c++/objectid.cc sparky/c++/objectid.h sparky/c++/offsettype.h sparky/c++/ornament.cc sparky/c++/ornament.h sparky/c++/paths.cc sparky/c++/paths.h sparky/c++/peak.cc sparky/c++/peak.h sparky/c++/peakgp.cc sparky/c++/peakgp.h sparky/c++/peakpick.cc sparky/c++/peakpick.h sparky/c++/peaks2ucsf.cc sparky/c++/pipe2ucsf.cc sparky/c++/print.cc sparky/c++/print.h sparky/c++/project.cc sparky/c++/project.h sparky/c++/python.cc sparky/c++/rectangle.cc sparky/c++/rectangle.h sparky/c++/region.cc sparky/c++/region.h sparky/c++/reporter.cc sparky/c++/reporter.h sparky/c++/resonance.cc sparky/c++/resonance.h sparky/c++/savefile.cc sparky/c++/savefile.h sparky/c++/session.cc sparky/c++/session.h sparky/c++/simplex.cc sparky/c++/simplex.h sparky/c++/spectrum.cc sparky/c++/spectrum.h sparky/c++/spectrumdata.cc sparky/c++/spectrumdata.h sparky/c++/spoint.cc sparky/c++/spoint.h sparky/c++/stringc.cc sparky/c++/stringc.h sparky/c++/subarray.cc sparky/c++/subarray.h sparky/c++/system-all.cc sparky/c++/system-unix.cc sparky/c++/system-win32.cc sparky/c++/system.h sparky/c++/table.cc sparky/c++/table.h sparky/c++/TAGS sparky/c++/tests/ sparky/c++/tests/test.c sparky/c++/tests/test_cast.cc sparky/c++/tests/test_downcast.c sparky/c++/tests/test_fseeko sparky/c++/tests/test_fseeko.c sparky/c++/tests/test_fseeko.cc sparky/c++/tests/test_otcast.cc sparky/c++/tests/test_typesizes sparky/c++/tests/test_typesizes.c sparky/c++/ucsfdata.cc sparky/c++/ucsffile.cc sparky/c++/ucsffile.h sparky/c++/uiassign.cc sparky/c++/uiassigncopy.cc sparky/c++/uicolor.cc sparky/c++/uicomponents.cc sparky/c++/uicomponents.h sparky/c++/uicontour.cc sparky/c++/uicscale.cc sparky/c++/uicscale.h sparky/c++/uidatalocation.cc sparky/c++/uidialog.cc sparky/c++/uidialog.h sparky/c++/uidialogs.h sparky/c++/uidrawing.cc sparky/c++/uidrawing.h sparky/c++/uiepanel.cc sparky/c++/uiepanel.h sparky/c++/uifile.cc sparky/c++/uifile.h sparky/c++/uiguess.cc sparky/c++/uiguess.h sparky/c++/uihelp.cc sparky/c++/uiintegrate.cc sparky/c++/uilabel.cc sparky/c++/uimain.cc sparky/c++/uimain.h sparky/c++/uimenu.cc sparky/c++/uimenu.h sparky/c++/uimidas.cc sparky/c++/uimode.cc sparky/c++/uimode.h sparky/c++/uinote.cc sparky/c++/uiornament.cc sparky/c++/uiornamentsize.cc sparky/c++/uioverlay.cc sparky/c++/uipeak.cc sparky/c++/uipeak.h sparky/c++/uipick.cc sparky/c++/uipkpanel.cc sparky/c++/uipkpanel.h sparky/c++/uiplop.cc sparky/c++/uiplop.h sparky/c++/uipredefined.cc sparky/c++/uipreference.cc sparky/c++/uiprint.cc sparky/c++/uiregion.cc sparky/c++/uiregion.h sparky/c++/uirename.cc sparky/c++/uiresonances.cc sparky/c++/uirpanel.cc sparky/c++/uirpanel.h sparky/c++/uiscale.cc sparky/c++/uiscale.h sparky/c++/uishifts.cc sparky/c++/uislice.cc sparky/c++/uislice.h sparky/c++/uispectrum.cc sparky/c++/uisync.cc sparky/c++/uiview.cc sparky/c++/uiview.h sparky/c++/uiviewdepth.cc sparky/c++/uiviewlist.cc sparky/c++/uiviewopt.cc sparky/c++/uiviewwin.cc sparky/c++/uiviewwin.h sparky/c++/uiwait.cc sparky/c++/uiwait.h sparky/c++/undo.cc sparky/c++/undo.h sparky/c++/utility.cc sparky/c++/utility.h sparky/c++/varianfile.cc sparky/c++/varianfile.h sparky/c++/version.h sparky/c++/vnmr2ucsf.cc sparky/c++/wait.h sparky/c++/win32-python.def sparky/c++/winsystem-all.cc sparky/c++/winsystem-unix.cc sparky/c++/winsystem-win32.cc sparky/c++/winsystem.h sparky/example/ sparky/example/data/ sparky/example/data/example100.ucsf sparky/example/data/example250.ucsf sparky/example/Projects/ sparky/example/Projects/example.proj sparky/example/README sparky/example/Save/ sparky/example/Save/example100.save sparky/example/Save/example250.save sparky/example/TATpeptide.pdb sparky/ideas sparky/lib/ sparky/lib/Makefile sparky/lib/print-prolog.ps sparky/lib/Sparky sparky/LICENSE sparky/mac/ sparky/mac/Info.plist sparky/mac/Makefile sparky/mac/sparky-icon.icns sparky/mac/sparky-mac.sh sparky/mac/xtest sparky/mac/xtest.c sparky/Makefile sparky/manual/ sparky/manual/.DS_Store sparky/manual/autoassign.html sparky/manual/changelog.html sparky/manual/extensions.html sparky/manual/files.html sparky/manual/images/ sparky/manual/images/assign.gif sparky/manual/images/assigngraph.gif sparky/manual/images/assignlist.gif sparky/manual/images/c30.gif sparky/manual/images/chemshift.gif sparky/manual/images/chimera-dialog.gif sparky/manual/images/chimera.gif sparky/manual/images/color-key-8.gif sparky/manual/images/contour-scale.gif sparky/manual/images/g28-2d.gif sparky/manual/images/g28-3d.gif sparky/manual/images/g28-both.gif sparky/manual/images/g28-key.gif sparky/manual/images/integ.gif sparky/manual/images/k15-fixed.gif sparky/manual/images/k15-problem.gif sparky/manual/images/levels.gif sparky/manual/images/modes.gif sparky/manual/images/n15hsqc.gif sparky/manual/images/peaklist.gif sparky/manual/images/pick.gif sparky/manual/images/reslist.gif sparky/manual/images/run-autoassign.gif sparky/manual/images/s47-fixed.gif sparky/manual/images/s47-gap.gif sparky/manual/images/s47-list.gif sparky/manual/images/spingraph.gif sparky/manual/images/spingraphopt.gif sparky/manual/images/stripmatch.gif sparky/manual/images/stripplot.gif sparky/manual/images/strips.gif sparky/manual/images/stripspect.gif sparky/manual/images/view.gif sparky/manual/images/y35.gif sparky/manual/index.html sparky/manual/indx.html sparky/manual/install.html sparky/manual/intro.html sparky/manual/Makefile sparky/manual/manual.html sparky/manual/manual.ps sparky/manual/misc.html sparky/manual/newstuff.html sparky/manual/old-images/ sparky/manual/old-images/integ.jpg sparky/manual/old-images/pick.jpg sparky/manual/old-images/stripparam.gif sparky/manual/old-images/view.jpg sparky/manual/overview.html sparky/manual/peaks.html sparky/manual/pkzip.cfg sparky/manual/PQR2.1.html sparky/manual/python-quick-ref.1.3.html sparky/manual/views.html sparky/python/ sparky/python/__init__.py sparky/python/align.py sparky/python/align.pyc sparky/python/assigngraph.py sparky/python/assigngraph.pyc sparky/python/atomnames.py sparky/python/atomnames.pyc sparky/python/atoms.py sparky/python/atoms.pyc sparky/python/autoassign.py sparky/python/autoassign.pyc sparky/python/axes.py sparky/python/axes.pyc sparky/python/ccpn-notes sparky/python/ccpn-notes~ sparky/python/ccpn096.py sparky/python/ccpn096.pyc sparky/python/ccpn096.py~ sparky/python/centerview.py sparky/python/centerview.pyc sparky/python/chemshift.py sparky/python/chemshift.pyc sparky/python/chimeraview.py sparky/python/chimeraview.pyc sparky/python/contourdefaults.py sparky/python/contourdefaults.py~ sparky/python/contrib/ sparky/python/contrib/cyanagarant.py sparky/python/copylinewidth.py sparky/python/copylinewidth.pyc sparky/python/corma.py sparky/python/corma.pyc sparky/python/cormaspectrum.py sparky/python/cormaspectrum.pyc sparky/python/coupling.py sparky/python/crosshair.py sparky/python/crosshair.py~ sparky/python/curvefit.py sparky/python/curvefit.pyc sparky/python/distance.py sparky/python/distance.pyc sparky/python/expectedpeaks.py sparky/python/expectedpeaks.pyc sparky/python/foldspectrum.py sparky/python/foldspectrum.pyc sparky/python/hcpeaks.py sparky/python/hcpeaks.pyc sparky/python/labelpeaks.py sparky/python/labelpeaks.py~ sparky/python/lib-tk/ sparky/python/lib-tk/Canvas.py sparky/python/lib-tk/Dialog.py sparky/python/lib-tk/FileDialog.py sparky/python/lib-tk/FixTk.py sparky/python/lib-tk/ScrolledText.py sparky/python/lib-tk/SimpleDialog.py sparky/python/lib-tk/Tix.py sparky/python/lib-tk/tkColorChooser.py sparky/python/lib-tk/tkCommonDialog.py sparky/python/lib-tk/Tkconstants.py sparky/python/lib-tk/Tkdnd.py sparky/python/lib-tk/tkFileDialog.py sparky/python/lib-tk/tkFont.py sparky/python/lib-tk/Tkinter.py sparky/python/lib-tk/tkMessageBox.py sparky/python/lib-tk/tkSimpleDialog.py sparky/python/lib-tk/turtle.py sparky/python/lib-tk-8.4.12/ sparky/python/lib-tk-8.4.12/Canvas.py sparky/python/lib-tk-8.4.12/Dialog.py sparky/python/lib-tk-8.4.12/FileDialog.py sparky/python/lib-tk-8.4.12/FixTk.py sparky/python/lib-tk-8.4.12/RCS/ sparky/python/lib-tk-8.4.12/RCS/Canvas.py,v sparky/python/lib-tk-8.4.12/RCS/Dialog.py,v sparky/python/lib-tk-8.4.12/RCS/FileDialog.py,v sparky/python/lib-tk-8.4.12/RCS/FixTk.py,v sparky/python/lib-tk-8.4.12/RCS/ScrolledText.py,v sparky/python/lib-tk-8.4.12/RCS/SimpleDialog.py,v sparky/python/lib-tk-8.4.12/RCS/Tix.py,v sparky/python/lib-tk-8.4.12/RCS/tkColorChooser.py,v sparky/python/lib-tk-8.4.12/RCS/tkCommonDialog.py,v sparky/python/lib-tk-8.4.12/RCS/Tkconstants.py,v sparky/python/lib-tk-8.4.12/RCS/Tkdnd.py,v sparky/python/lib-tk-8.4.12/RCS/tkFileDialog.py,v sparky/python/lib-tk-8.4.12/RCS/tkFont.py,v sparky/python/lib-tk-8.4.12/RCS/Tkinter.py,v sparky/python/lib-tk-8.4.12/RCS/tkMessageBox.py,v sparky/python/lib-tk-8.4.12/RCS/tkSimpleDialog.py,v sparky/python/lib-tk-8.4.12/RCS/turtle.py,v sparky/python/lib-tk-8.4.12/ScrolledText.py sparky/python/lib-tk-8.4.12/SimpleDialog.py sparky/python/lib-tk-8.4.12/Tix.py sparky/python/lib-tk-8.4.12/tkColorChooser.py sparky/python/lib-tk-8.4.12/tkCommonDialog.py sparky/python/lib-tk-8.4.12/Tkconstants.py sparky/python/lib-tk-8.4.12/Tkdnd.py sparky/python/lib-tk-8.4.12/tkFileDialog.py sparky/python/lib-tk-8.4.12/tkFont.py sparky/python/lib-tk-8.4.12/Tkinter.py sparky/python/lib-tk-8.4.12/tkMessageBox.py sparky/python/lib-tk-8.4.12/tkSimpleDialog.py sparky/python/lib-tk-8.4.12/turtle.py sparky/python/lib-tk-8.4.5/ sparky/python/lib-tk-8.4.5/Canvas.py sparky/python/lib-tk-8.4.5/Dialog.py sparky/python/lib-tk-8.4.5/FileDialog.py sparky/python/lib-tk-8.4.5/FixTk.py sparky/python/lib-tk-8.4.5/RCS/ sparky/python/lib-tk-8.4.5/RCS/Canvas.py,v sparky/python/lib-tk-8.4.5/RCS/Dialog.py,v sparky/python/lib-tk-8.4.5/RCS/FileDialog.py,v sparky/python/lib-tk-8.4.5/RCS/FixTk.py,v sparky/python/lib-tk-8.4.5/RCS/ScrolledText.py,v sparky/python/lib-tk-8.4.5/RCS/SimpleDialog.py,v sparky/python/lib-tk-8.4.5/RCS/Tix.py,v sparky/python/lib-tk-8.4.5/RCS/tkColorChooser.py,v sparky/python/lib-tk-8.4.5/RCS/tkCommonDialog.py,v sparky/python/lib-tk-8.4.5/RCS/Tkconstants.py,v sparky/python/lib-tk-8.4.5/RCS/Tkdnd.py,v sparky/python/lib-tk-8.4.5/RCS/tkFileDialog.py,v sparky/python/lib-tk-8.4.5/RCS/tkFont.py,v sparky/python/lib-tk-8.4.5/RCS/Tkinter.py,v sparky/python/lib-tk-8.4.5/RCS/tkMessageBox.py,v sparky/python/lib-tk-8.4.5/RCS/tkSimpleDialog.py,v sparky/python/lib-tk-8.4.5/RCS/turtle.py,v sparky/python/lib-tk-8.4.5/ScrolledText.py sparky/python/lib-tk-8.4.5/SimpleDialog.py sparky/python/lib-tk-8.4.5/Tix.py sparky/python/lib-tk-8.4.5/tkColorChooser.py sparky/python/lib-tk-8.4.5/tkCommonDialog.py sparky/python/lib-tk-8.4.5/Tkconstants.py sparky/python/lib-tk-8.4.5/Tkdnd.py sparky/python/lib-tk-8.4.5/tkFileDialog.py sparky/python/lib-tk-8.4.5/tkFont.py sparky/python/lib-tk-8.4.5/Tkinter.py sparky/python/lib-tk-8.4.5/tkMessageBox.py sparky/python/lib-tk-8.4.5/tkSimpleDialog.py sparky/python/lib-tk-8.4.5/turtle.py sparky/python/linewidthplot.py sparky/python/linewidthplot.pyc sparky/python/Makefile sparky/python/mardigras.py sparky/python/mardigras.pyc sparky/python/midas.py sparky/python/midas.pyc sparky/python/midasconstraint.py sparky/python/midasconstraint.pyc sparky/python/midaspick.py sparky/python/midaspick.pyc sparky/python/mirror.py sparky/python/mirror.pyc sparky/python/mouseshift.py sparky/python/mouseshift.pyc sparky/python/mouseshift.py~ sparky/python/movepeaks.py sparky/python/movepeaks.pyc sparky/python/noesy.py sparky/python/noesy.pyc sparky/python/noesyassign.py sparky/python/noesyassign.pyc sparky/python/notate.py~ sparky/python/numberpeaks.py sparky/python/numberpeaks.py~ sparky/python/openspectra.py sparky/python/openspectra.pyc sparky/python/pdb.py sparky/python/pdb.pyc sparky/python/peaklist.py sparky/python/peaklist.pyc sparky/python/peakratio.py sparky/python/peakratio.pyc sparky/python/peakratio.py~ sparky/python/peaktable.py sparky/python/peaktable.pyc sparky/python/peakto2d.py sparky/python/peakto2d.py~ sparky/python/planestep.py sparky/python/planestep.py~ sparky/python/pointermode.py sparky/python/pointermode.pyc sparky/python/pointermode.py~ sparky/python/pythonshell.py sparky/python/pythonshell.pyc sparky/python/pyutil.py sparky/python/pyutil.pyc sparky/python/quotenote.py sparky/python/README sparky/python/readpeaks.py sparky/python/readpeaks.pyc sparky/python/regionrmsd.py sparky/python/regionrmsd.pyc sparky/python/regionrmsd.py~ sparky/python/relax.py sparky/python/relax.pyc sparky/python/relaxbox.py sparky/python/relaxbox.py~ sparky/python/reposition.py sparky/python/reposition.pyc sparky/python/restrictedpick.py sparky/python/restrictedpick.pyc sparky/python/selectlabels.py sparky/python/sequence.py sparky/python/sequence.pyc sparky/python/shiftstats.py sparky/python/shiftstats.pyc sparky/python/snapshot.py sparky/python/snapshot.pyc sparky/python/snapshot.py~ sparky/python/sparky_init.py sparky/python/sparky_site.py sparky/python/spingraph.py sparky/python/spingraph.pyc sparky/python/spinlayout.py sparky/python/spinlayout.pyc sparky/python/sputil.py sparky/python/sputil.pyc sparky/python/start_in_chimera.py sparky/python/start_in_chimera.pyc sparky/python/strips.py sparky/python/strips.pyc sparky/python/subprocess.py sparky/python/subprocess.pyc sparky/python/testscroll.py sparky/python/testscroll.pyc sparky/python/testscroll.py~ sparky/python/tkinterbug.py sparky/python/tkutil.py sparky/python/tkutil.pyc sparky/python/view3dpeaks.py sparky/python/view3dpeaks.py~ sparky/python/volumeerror.py sparky/python/volumeerror.pyc sparky/python/xeasy.py sparky/python/xeasy.pyc sparky/python/xplor.py sparky/python/xplor.pyc sparky/README sparky/readme-code.html sudo -u fink-bld [ENV] sh -c /tmp/fink.oMIcH [ -r /sw/fink/dists/stable/main/finkinfo/sci/sparky-py.patch ] sudo -u fink-bld [ENV] sh -c /tmp/fink.7yEBl /tmp/fink.t6sRc + sed 's|@FINKPREFIX@|/sw|g' + sed 's|@BUILDDIR@|/sw/build.build/sparky-py27-3.115-1004/sparky|g' + sed 's|@FINKDESTDIR@|/sw/build.build/root-sparky-py27-3.115-1004|g' + sed 's|2.X|2.7|g' + sed 's|sparky-py2X|sparky-py27|g' + patch -p1 patching file Makefile patching file bin/sparky patching file c++/Makefile patching file lib/Makefile patching file manual/Makefile patching file python/Makefile + perl -ni -e 'print unless /LIBRARY_PATH/' bin/sparky + perl -pi -e s,-Wno-long-double,, ./c++/Makefile ++ uname -r ++ cut -d. -f1 + darwin_vers=13 + '[' 13 -ge 13 ']' + perl -pi -e 's|8.4|8.6|g' ./c++/Makefile + perl -pi -e 's|84|86|g' ./c++/Makefile + perl -pi -e 's|8.4|8.6|g' ./bin/sparky + perl -pi -e 's|8.4|8.6|g' ./lib/Makefile sudo -u fink-bld [ENV] sh -c /tmp/fink.s4kr3 make cd /sw/build.build/sparky-py27-3.115-1004/sparky/c++ && /Applications/Xcode.app/Contents/Developer/usr/bin/make -f /sw/build.build/sparky-py27-3.115-1004/sparky/c++/Makefile -e all g++ -O3 -ffast-math -fPIC -fno-common -I/sw/include/python2.7 -I/sw/lib/python2.7/config -I/sw/include -I/usr/X11R6/include -c /sw/build.build/sparky-py27-3.115-1004/sparky/c++/python.cc g++ -O3 -ffast-math -fPIC -fno-common -c assignguess.cc g++ -O3 -ffast-math -fPIC -fno-common -c assigncopy.cc g++ -O3 -ffast-math -fPIC -fno-common -c attacheddata.cc g++ -O3 -ffast-math -fPIC -fno-common -c atom.cc g++ -O3 -ffast-math -fPIC -fno-common -c axismap.cc g++ -O3 -ffast-math -fPIC -fno-common -c binaryIO.cc g++ -O3 -ffast-math -fPIC -fno-common -c blockfile.cc g++ -O3 -ffast-math -fPIC -fno-common -c brukerfile.cc g++ -O3 -ffast-math -fPIC -fno-common -c color.cc assignguess.cc:428:24: warning: cast to 'void *' from smaller integer type 'int' [-Wint-to-void-pointer-cast] { if (!list.contains((void *) i)) list.append((void *) i); } ^ assignguess.cc:428:49: warning: cast to 'void *' from smaller integer type 'int' [-Wint-to-void-pointer-cast] { if (!list.contains((void *) i)) list.append((void *) i); } ^ assignguess.cc:465:29: warning: cast to 'void *' from smaller integer type 'int' [-Wint-to-void-pointer-cast] accept = ilist.contains((void *) gnum); ^ assignguess.cc:467:29: warning: cast to 'void *' from smaller integer type 'int' [-Wint-to-void-pointer-cast] accept = ilist.contains((void *) (gnum+1)); ^ assignguess.cc:469:30: warning: cast to 'void *' from smaller integer type 'int' [-Wint-to-void-pointer-cast] accept = (ilist.contains((void *) gnum) || ^ assignguess.cc:470:23: warning: cast to 'void *' from smaller integer type 'int' [-Wint-to-void-pointer-cast] ilist.contains((void *) (gnum+1))); ^ g++ -O3 -ffast-math -fPIC -fno-common -c command.cc g++ -O3 -ffast-math -fPIC -fno-common -c condition.cc g++ -O3 -ffast-math -fPIC -fno-common -c contour.cc g++ -O3 -ffast-math -fPIC -fno-common -c contourplane.cc 6 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c contourstream.cc brukerfile.cc:379:12: warning: assigning field to itself [-Wself-assign-field] this->fp = fp; ^ /sw/build.build/sparky-py27-3.115-1004/sparky/c++/python.cc:732:6: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] {"selection changed", ^ /sw/build.build/sparky-py27-3.115-1004/sparky/c++/python.cc:734:6: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] {"drag region", nt_drag_sregion, call_sregion_callback}, ^ /sw/build.build/sparky-py27-3.115-1004/sparky/c++/python.cc:735:6: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] {"will drag peak", nt_will_drag_peak, call_peak_callback}, ^ /sw/build.build/sparky-py27-3.115-1004/sparky/c++/python.cc:736:6: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] {"dragged peak", nt_dragged_peak, call_peak_callback}, ^ /sw/build.build/sparky-py27-3.115-1004/sparky/c++/python.cc:737:6: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] {"removed spectrum from project", ^ /sw/build.build/sparky-py27-3.115-1004/sparky/c++/python.cc:739:6: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] {"added spectrum to project", ^ /sw/build.build/sparky-py27-3.115-1004/sparky/c++/python.cc:741:6: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] {"pointer mode changed", nt_changed_pointer_mode, call_void_callback}, ^ g++ -O3 -ffast-math -fPIC -fno-common -c crosspeak.cc /sw/build.build/sparky-py27-3.115-1004/sparky/c++/python.cc:3473:32: warning: cast to 'const void *' from smaller integer type 'int' [-Wint-to-void-pointer-cast] if (id_to_python_object.find((TableKey) id, &pyobj)) ^ /sw/build.build/sparky-py27-3.115-1004/sparky/c++/python.cc:3483:30: warning: cast to 'const void *' from smaller integer type 'int' [-Wint-to-void-pointer-cast] id_to_python_object.insert((TableKey) id, (TableData) py_object); ^ /sw/build.build/sparky-py27-3.115-1004/sparky/c++/python.cc:4029:5: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c dataregion.cc g++ -O3 -ffast-math -fPIC -fno-common -c felixfile.cc contour.cc:115:2: warning: add explicit braces to avoid dangling else [-Wdangling-else] else if (tcount % 100 == 0) ^ g++ -O3 -ffast-math -fPIC -fno-common -c format.cc command.cc:259:5: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "", ^ 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c grid.cc g++ -O3 -ffast-math -fPIC -fno-common -c group.cc crosspeak.cc:442:15: warning: comparison of constant -1 with expression of type 'Ornament_Type' is always false [-Wtautological-constant-out-of-range-compare] w = (type() == -1 ? 0 : dr.ornament_size(type(), dr.axis(X))); ~~~~~~ ^ ~~ crosspeak.cc:443:15: warning: comparison of constant -1 with expression of type 'Ornament_Type' is always false [-Wtautological-constant-out-of-range-compare] h = (type() == -1 ? 0 : dr.ornament_size(type(), dr.axis(Y))); ~~~~~~ ^ ~~ 2 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c integrate.cc g++ -O3 -ffast-math -fPIC -fno-common -c label.cc 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c line.cc g++ -O3 -ffast-math -fPIC -fno-common -c linefit.cc 10 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c lusolve.cc g++ -O3 -ffast-math -fPIC -fno-common -c list.cc g++ -O3 -ffast-math -fPIC -fno-common -c memalloc.cc g++ -O3 -ffast-math -fPIC -fno-common -c memcache.cc format.cc:2529:16: warning: comparison of constant -1 with expression of type 'Ornament_Type' is always true [-Wtautological-constant-out-of-range-compare] while (type != -1) { ~~~~ ^ ~~ format.cc:3326:40: warning: if statement has empty body [-Wempty-body] else if (strcmp(cp, "estimate") == 0) ; // obsolete ^ format.cc:3326:40: note: put the semicolon on a separate line to silence this warning g++ -O3 -ffast-math -fPIC -fno-common -c model.cc g++ -O3 -ffast-math -fPIC -fno-common -c molecule.cc g++ -O3 -ffast-math -fPIC -fno-common -c notifier.cc g++ -O3 -ffast-math -fPIC -fno-common -c nmrdata.cc g++ -O3 -ffast-math -fPIC -fno-common -c num.cc g++ -O3 -ffast-math -fPIC -fno-common -c objectid.cc g++ -O3 -ffast-math -fPIC -fno-common -c ornament.cc g++ -O3 -ffast-math -fPIC -fno-common -c paths.cc g++ -O3 -ffast-math -fPIC -fno-common -c peak.cc g++ -O3 -ffast-math -fPIC -fno-common -c peakgp.cc g++ -O3 -ffast-math -fPIC -fno-common -c peakpick.cc objectid.cc:54:48: warning: cast to 'void *' from smaller integer type 'int' [-Wint-to-void-pointer-cast] object_to_id_table.insert((TableKey) nj, (TableData) id); ^ objectid.cc:55:33: warning: cast to 'const void *' from smaller integer type 'int' [-Wint-to-void-pointer-cast] id_to_object_table.insert((TableKey) id, (TableData) nj); ^ objectid.cc:67:31: warning: cast to 'const void *' from smaller integer type 'int' [-Wint-to-void-pointer-cast] if (id_to_object_table.find((TableKey) id, &table_object)) ^ objectid.cc:105:32: warning: cast to 'const void *' from smaller integer type 'int' [-Wint-to-void-pointer-cast] if (!id_to_object_table.find((TableKey) id, &table_object)) ^ objectid.cc:108:48: warning: cast to 'void *' from smaller integer type 'int' [-Wint-to-void-pointer-cast] object_to_id_table.insert((TableKey) nj, (TableData) id); ^ objectid.cc:109:33: warning: cast to 'const void *' from smaller integer type 'int' [-Wint-to-void-pointer-cast] id_to_object_table.insert((TableKey) id, (TableData) nj); ^ 6 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c print.cc g++ -O3 -ffast-math -fPIC -fno-common -c project.cc g++ -O3 -ffast-math -fPIC -fno-common -c rectangle.cc g++ -O3 -ffast-math -fPIC -fno-common -c region.cc g++ -O3 -ffast-math -fPIC -fno-common -c reporter.cc g++ -O3 -ffast-math -fPIC -fno-common -c resonance.cc g++ -O3 -ffast-math -fPIC -fno-common -c savefile.cc g++ -O3 -ffast-math -fPIC -fno-common -c session.cc print.cc:104:4: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] { "A", 8.5, 11, 1, 1, 1, 1}, /* 8.5x11 in */ ^ print.cc:105:4: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] { "AC", 8.5, 11, 1, 2, 1, 1.6}, /* 8.5x11 in, color */ ^ project.cc:416:5: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ project.cc:996:2: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ project.cc:1133:47: warning: cast to 'void *' from smaller integer type 'int' [-Wint-to-void-pointer-cast] dt.set_data("highest_used_view_suffix", (void *) suffix); ^ print.cc:1354:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] char *standard = "Standard Width"; ^ g++ -O3 -ffast-math -fPIC -fno-common -c simplex.cc g++ -O3 -ffast-math -fPIC -fno-common -c spectrum.cc 3 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c spectrumdata.cc g++ -O3 -ffast-math -fPIC -fno-common -c spoint.cc g++ -O3 -ffast-math -fPIC -fno-common -c stringc.cc 3 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c subarray.cc g++ -O3 -ffast-math -fPIC -fno-common -c system-unix.cc g++ -O3 -ffast-math -fPIC -fno-common -c table.cc g++ -O3 -ffast-math -fPIC -fno-common -c ucsffile.cc 2 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c uiassign.cc g++ -O3 -ffast-math -fPIC -fno-common -c uiassigncopy.cc g++ -O3 -ffast-math -fPIC -fno-common -c uicolor.cc spectrum.cc:63:2: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%a1-%a2", ^ spectrum.cc:64:2: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%a1-%a2-%a3", ^ spectrum.cc:65:2: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%a1-%a2-%a3-%a4", ^ stringc.cc:19:29: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *empty_string = ""; ^ 3 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c uicomponents.cc g++ -O3 -ffast-math -fPIC -fno-common -c uicontour.cc 1 warning generated. In file included from system-unix.cc:25: ./system-all.cc:216:5: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ g++ -O3 -ffast-math -fPIC -fno-common -c uicscale.cc ./system-all.cc:268:12: warning: 'tmpnam' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of tmpnam(3), it is highly recommended that you use mkstemp(3) instead. [-Wdeprecated-declarations] { return tmpnam(NULL); } ^ /usr/include/stdio.h:274:7: note: 'tmpnam' declared here char *tmpnam(char *); ^ system-unix.cc:336:20: warning: cast to 'void *' from smaller integer type 'pid_t' (aka 'int') [-Wint-to-void-pointer-cast] wait_pids.append((void *) pid); ^ ucsffile.cc:1239:28: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *code_str[] = {"Off", "On"}; ^ ucsffile.cc:1239:35: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *code_str[] = {"Off", "On"}; ^ ucsffile.cc:1240:28: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *ft_str[] = {"None", "Real", "Complex", "Inverse"}; ^ ucsffile.cc:1240:36: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *ft_str[] = {"None", "Real", "Complex", "Inverse"}; ^ ucsffile.cc:1240:44: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *ft_str[] = {"None", "Real", "Complex", "Inverse"}; ^ ucsffile.cc:1240:55: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *ft_str[] = {"None", "Real", "Complex", "Inverse"}; ^ ucsffile.cc:1241:32: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *status_str[] = {"No", "Yes"}; ^ ucsffile.cc:1241:38: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *status_str[] = {"No", "Yes"}; ^ ucsffile.cc:1242:32: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *domain_str[] = {"Time\t", "Frequency"}; ^ ucsffile.cc:1242:42: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *domain_str[] = {"Time\t", "Frequency"}; ^ ucsffile.cc:1243:30: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *conv_str[] = {"None", "Sine Bell", "Gaussian"}; ^ ucsffile.cc:1243:38: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *conv_str[] = {"None", "Sine Bell", "Gaussian"}; ^ ucsffile.cc:1243:51: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *conv_str[] = {"None", "Sine Bell", "Gaussian"}; ^ ucsffile.cc:1244:33: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *replace_str[] = {"None", "One sided", "One Sided", "Two Sided"}; ^ ucsffile.cc:1244:41: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *replace_str[] = {"None", "One sided", "One Sided", "Two Sided"}; ^ ucsffile.cc:1244:54: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *replace_str[] = {"None", "One sided", "One Sided", "Two Sided"}; ^ ucsffile.cc:1244:67: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *replace_str[] = {"None", "One sided", "One Sided", "Two Sided"}; ^ ucsffile.cc:1245:29: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *apo_str[] = { "None", "Sine", "Sine Square", "Exponential", ^ ucsffile.cc:1245:37: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *apo_str[] = { "None", "Sine", "Sine Square", "Exponential", ^ ucsffile.cc:1245:45: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *apo_str[] = { "None", "Sine", "Sine Square", "Exponential", ^ ucsffile.cc:1245:60: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *apo_str[] = { "None", "Sine", "Sine Square", "Exponential", ^ ucsffile.cc:1246:7: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "Gaussian", "None", "Convolution", "", ^ ucsffile.cc:1246:19: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "Gaussian", "None", "Convolution", "", ^ ucsffile.cc:1246:27: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "Gaussian", "None", "Convolution", "", ^ ucsffile.cc:1246:42: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "Gaussian", "None", "Convolution", "", ^ ucsffile.cc:1247:7: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "", "","Custom"}; ^ ucsffile.cc:1247:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "", "","Custom"}; ^ ucsffile.cc:1247:14: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "", "","Custom"}; ^ uiassign.cc:123:7: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ uicolor.cc:61:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "close", close_cb, this, ^ uiassigncopy.cc:68:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ 3 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c uidatalocation.cc 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uidialog.cc 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uidrawing.cc 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uiepanel.cc uicontour.cc:81:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uifile.cc g++ -O3 -ffast-math -fPIC -fno-common -c uiguess.cc In file included from uicscale.cc:10: ./uicscale.h:5:9: warning: 'UICSCALE_HEADER_INCLUDED' is used as a header guard here, followed by #define of a different macro [-Wheader-guard] #ifndef UICSCALE_HEADER_INCLUDED ^~~~~~~~~~~~~~~~~~~~~~~~ ./uicscale.h:6:9: note: 'UISCALE_HEADER_INCLUDED' is defined here; did you mean 'UICSCALE_HEADER_INCLUDED'? #define UISCALE_HEADER_INCLUDED ^~~~~~~~~~~~~~~~~~~~~~~ UICSCALE_HEADER_INCLUDED uidatalocation.cc:51:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uihelp.cc 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uiintegrate.cc g++ -O3 -ffast-math -fPIC -fno-common -c uilabel.cc 28 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c uimain.cc g++ -O3 -ffast-math -fPIC -fno-common -c uimenu.cc g++ -O3 -ffast-math -fPIC -fno-common -c uimidas.cc g++ -O3 -ffast-math -fPIC -fno-common -c uimode.cc uiguess.cc:76:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uinote.cc g++ -O3 -ffast-math -fPIC -fno-common -c uiornament.cc uiintegrate.cc:87:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ uilabel.cc:93:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uiornamentsize.cc 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uioverlay.cc g++ -O3 -ffast-math -fPIC -fno-common -c uipeak.cc uimidas.cc:135:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uipkpanel.cc g++ -O3 -ffast-math -fPIC -fno-common -c uipick.cc uinote.cc:51:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uiplop.cc uiornament.cc:96:8: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "color", color_cb, this, ^ uiornament.cc:105:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ 2 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c uipredefined.cc uiornamentsize.cc:65:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ uioverlay.cc:52:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "add", add_cb, this, ^ g++ -O3 -ffast-math -fPIC -fno-common -c uipreference.cc uipeak.cc:175:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "update", update_cb, this, ^ uipeak.cc:247:2: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ uipeak.cc:387:2: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uiprint.cc 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uiregion.cc uipick.cc:67:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ 3 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c uirename.cc 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uiresonances.cc g++ -O3 -ffast-math -fPIC -fno-common -c uirpanel.cc uiplop.cc:182:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ uipredefined.cc:55:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "copy", copy_cb, this, ^ uipreference.cc:53:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uiscale.cc 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uishifts.cc uiprint.cc:96:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "print", print_cb, this, ^ uiprint.cc:159:5: warning: add explicit braces to avoid dangling else [-Wdangling-else] else if (w == ws.table_element(table, 2, 4)) ^ uiregion.cc:105:10: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "current", current_cb, this, ^ uiregion.cc:111:10: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "add", add_cb, this, ^ uiregion.cc:116:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "goto", show_region_cb, this, ^ 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uislice.cc 2 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c uispectrum.cc 3 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c uisync.cc uirename.cc:95:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "rename", rename_cb, this, ^ uiresonances.cc:74:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "update", update_cb, this, ^ 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uiview.cc 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uiviewopt.cc g++ -O3 -ffast-math -fPIC -fno-common -c uiviewdepth.cc uishifts.cc:106:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "update", update_cb, this, ^ g++ -O3 -ffast-math -fPIC -fno-common -c uiviewlist.cc uispectrum.cc:88:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ uisync.cc:64:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "synchronize", synchronize_cb, this, ^ g++ -O3 -ffast-math -fPIC -fno-common -c uiviewwin.cc 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c uiwait.cc 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c undo.cc 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c utility.cc uiviewopt.cc:85:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ In file included from uiview.cc:38: ./uicscale.h:5:9: warning: 'UICSCALE_HEADER_INCLUDED' is used as a header guard here, followed by #define of a different macro [-Wheader-guard] #ifndef UICSCALE_HEADER_INCLUDED ^~~~~~~~~~~~~~~~~~~~~~~~ ./uicscale.h:6:9: note: 'UISCALE_HEADER_INCLUDED' is defined here; did you mean 'UICSCALE_HEADER_INCLUDED'? #define UISCALE_HEADER_INCLUDED ^~~~~~~~~~~~~~~~~~~~~~~ UICSCALE_HEADER_INCLUDED g++ -O3 -ffast-math -fPIC -fno-common -I/sw/include -I/usr/X11R6/include -c /sw/build.build/sparky-py27-3.115-1004/sparky/c++/winsystem-unix.cc uiview.cc:916:4: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ uiview.cc:1087:4: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ 1 warning generated. gcc -O3 -ffast-math -fPIC -fno-common -I/sw/include -I/usr/X11R6/include -I/sw/include/python2.7 -I/sw/lib/python2.7/config -c /sw/build.build/sparky-py27-3.115-1004/sparky/c++/_tkinter.c uiviewdepth.cc:70:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "ok", ok_cb, this, ^ 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c main.cc g++ -O3 -ffast-math -fPIC -fno-common -c ucsfdata.cc uiviewlist.cc:67:11: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "show", show_cb, this, ^ uiviewwin.cc:268:5: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c nihfile.cc g++ -O3 -ffast-math -fPIC -fno-common -c varianfile.cc 1 warning generated. g++ -O3 -ffast-math -fPIC -fno-common -c pipe2ucsf.cc g++ -O3 -ffast-math -fPIC -fno-common -c vnmr2ucsf.cc 3 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c bruk2ucsf.cc g++ -O3 -ffast-math -fPIC -fno-common -c peaks2ucsf.cc ucsfdata.cc:132:5: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ ucsfdata.cc:287:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ ucsfdata.cc:308:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ varianfile.cc:540:29: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *nuctags[] = {"tn", "dn", "dn2", "dn3"}; ^ varianfile.cc:540:35: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *nuctags[] = {"tn", "dn", "dn2", "dn3"}; ^ varianfile.cc:540:41: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *nuctags[] = {"tn", "dn", "dn2", "dn3"}; ^ varianfile.cc:540:48: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *nuctags[] = {"tn", "dn", "dn2", "dn3"}; ^ varianfile.cc:541:30: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *freqtags[] = {"sfrq", "dfrq", "dfrq2", "dfrq3"}; ^ varianfile.cc:541:38: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *freqtags[] = {"sfrq", "dfrq", "dfrq2", "dfrq3"}; ^ varianfile.cc:541:46: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *freqtags[] = {"sfrq", "dfrq", "dfrq2", "dfrq3"}; ^ varianfile.cc:541:55: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] static char *freqtags[] = {"sfrq", "dfrq", "dfrq2", "dfrq3"}; ^ varianfile.cc:601:12: warning: assigning field to itself [-Wself-assign-field] this->fp = fp; ^ 3 warnings generated. g++ -O3 -ffast-math -fPIC -fno-common -c matrix2ucsf.cc g++ -bundle -flat_namespace -undefined suppress -o _tkinter.so _tkinter.o -L/sw/lib -L/sw/lib -ltk8.6 -ltcl8.6 -L/usr/X11R6/lib -lX11 pipe2ucsf.cc:22:1: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "Syntax: pipe2ucsf [-] \n" ^ vnmr2ucsf.cc:21:1: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "Syntax: vnmr2ucsf \n" ^ 1 warning generated. 1 warning generated. bruk2ucsf.cc:19:1: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "Syntax: bruk2ucsf \n" ^ 1 warning generated. 9 warnings generated. g++ -o ucsfdata ucsfdata.o binaryIO.o blockfile.o brukerfile.o list.o memalloc.o memcache.o nihfile.o nmrdata.o num.o spoint.o subarray.o stringc.o system-unix.o table.o ucsffile.o utility.o varianfile.o -L/sw/lib -lm g++ -o pipe2ucsf pipe2ucsf.o binaryIO.o blockfile.o brukerfile.o list.o memalloc.o memcache.o nihfile.o nmrdata.o num.o spoint.o subarray.o stringc.o system-unix.o table.o ucsffile.o utility.o varianfile.o -L/sw/lib -lm g++ -o vnmr2ucsf vnmr2ucsf.o binaryIO.o blockfile.o brukerfile.o list.o memalloc.o memcache.o nihfile.o nmrdata.o num.o spoint.o subarray.o stringc.o system-unix.o table.o ucsffile.o utility.o varianfile.o -L/sw/lib -lm g++ -o bruk2ucsf bruk2ucsf.o binaryIO.o blockfile.o brukerfile.o list.o memalloc.o memcache.o nihfile.o nmrdata.o num.o spoint.o subarray.o stringc.o system-unix.o table.o ucsffile.o utility.o varianfile.o -L/sw/lib -lm peaks2ucsf.cc:102:1: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "Syntax: peaks2ucsf output-file < parameter-file\n" ^ 1 warning generated. g++ -o peaks2ucsf peaks2ucsf.o binaryIO.o blockfile.o brukerfile.o list.o memalloc.o memcache.o nihfile.o nmrdata.o num.o spoint.o subarray.o stringc.o system-unix.o table.o ucsffile.o utility.o varianfile.o -L/sw/lib -lm g++ -o matrix2ucsf matrix2ucsf.o binaryIO.o blockfile.o brukerfile.o list.o memalloc.o memcache.o nihfile.o nmrdata.o num.o spoint.o subarray.o stringc.o system-unix.o table.o ucsffile.o utility.o varianfile.o -L/sw/lib -lm g++ -bundle -flat_namespace -undefined suppress -o spy.so python.o assignguess.o assigncopy.o attacheddata.o atom.o axismap.o binaryIO.o blockfile.o brukerfile.o color.o command.o condition.o contour.o contourplane.o contourstream.o crosspeak.o dataregion.o felixfile.o format.o grid.o group.o integrate.o label.o line.o linefit.o lusolve.o list.o memalloc.o memcache.o model.o molecule.o notifier.o nmrdata.o num.o objectid.o ornament.o paths.o peak.o peakgp.o peakpick.o print.o project.o rectangle.o region.o reporter.o resonance.o savefile.o session.o simplex.o spectrum.o spectrumdata.o spoint.o stringc.o subarray.o system-unix.o table.o ucsffile.o uiassign.o uiassigncopy.o uicolor.o uicomponents.o uicontour.o uicscale.o uidatalocation.o uidialog.o uidrawing.o uiepanel.o uifile.o uiguess.o uihelp.o uiintegrate.o uilabel.o uimain.o uimenu.o uimidas.o uimode.o uinote.o uiornament.o uiornamentsize.o uioverlay.o uipeak.o uipkpanel.o uipick.o uiplop.o uipredefined.o uipreference.o uiprint.o uiregion.o uirename.o uiresonances.o uirpanel.o uiscale.o uishifts.o uislice.o uispectrum.o uisync.o uiview.o uiviewopt.o uiviewdepth.o uiviewlist.o uiviewwin.o uiwait.o undo.o utility.o winsystem-unix.o -L/sw/lib -L/sw/lib -ltk8.6 -ltcl8.6 -L/usr/X11R6/lib -lX11 -lm g++ -o sparky-no-python main.o assignguess.o assigncopy.o attacheddata.o atom.o axismap.o binaryIO.o blockfile.o brukerfile.o color.o command.o condition.o contour.o contourplane.o contourstream.o crosspeak.o dataregion.o felixfile.o format.o grid.o group.o integrate.o label.o line.o linefit.o lusolve.o list.o memalloc.o memcache.o model.o molecule.o notifier.o nmrdata.o num.o objectid.o ornament.o paths.o peak.o peakgp.o peakpick.o print.o project.o rectangle.o region.o reporter.o resonance.o savefile.o session.o simplex.o spectrum.o spectrumdata.o spoint.o stringc.o subarray.o system-unix.o table.o ucsffile.o uiassign.o uiassigncopy.o uicolor.o uicomponents.o uicontour.o uicscale.o uidatalocation.o uidialog.o uidrawing.o uiepanel.o uifile.o uiguess.o uihelp.o uiintegrate.o uilabel.o uimain.o uimenu.o uimidas.o uimode.o uinote.o uiornament.o uiornamentsize.o uioverlay.o uipeak.o uipkpanel.o uipick.o uiplop.o uipredefined.o uipreference.o uiprint.o uiregion.o uirename.o uiresonances.o uirpanel.o uiscale.o uishifts.o uislice.o uispectrum.o uisync.o uiview.o uiviewopt.o uiviewdepth.o uiviewlist.o uiviewwin.o uiwait.o undo.o utility.o winsystem-unix.o -L/sw/lib -L/sw/lib -ltk8.6 -ltcl8.6 -L/usr/X11R6/lib -lX11 -lm /bin/rm -rf /sw/build.build/root-sparky-py27-3.115-1004 /bin/mkdir -p /sw/build.build/root-sparky-py27-3.115-1004/sw /bin/mkdir -p /sw/build.build/root-sparky-py27-3.115-1004/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-sparky-py27-3.115-1004 sudo -u fink-bld [ENV] sh -c /tmp/fink.20dKH mkdir -p /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27 make install mkdir /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/bin chmod 755 /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/bin cd /sw/build.build/sparky-py27-3.115-1004/sparky/c++ && \ /Applications/Xcode.app/Contents/Developer/usr/bin/make -f /sw/build.build/sparky-py27-3.115-1004/sparky/c++/Makefile -e install-nopython \cp sparky-no-python ucsfdata pipe2ucsf vnmr2ucsf bruk2ucsf peaks2ucsf matrix2ucsf /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/bin cd /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/bin ; \ chmod 755 sparky-no-python ucsfdata pipe2ucsf vnmr2ucsf bruk2ucsf peaks2ucsf matrix2ucsf cd /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/bin ; \ \cp /sw/build.build/sparky-py27-3.115-1004/sparky/bin/sparky sparky ; \ chmod 755 sparky cd /sw/build.build/sparky-py27-3.115-1004/sparky ; \cp -R example /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27 cd /sw/build.build/sparky-py27-3.115-1004/sparky/lib && /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Makefile -e install mkdir /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/lib chmod 755 /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/lib \cp Sparky print-prolog.ps /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/lib cd /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/lib ; \ chmod 644 Sparky print-prolog.ps cd /sw/build.build/sparky-py27-3.115-1004/sparky/manual && /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Makefile -e install echo 'Postscript Sparky manual needs updating' Postscript Sparky manual needs updating gzip -c manual.ps > manual-postscript.gz mkdir /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/manual chmod 755 /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/manual mkdir /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/manual/images chmod 755 /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/manual/images \cp overview.html intro.html views.html peaks.html extensions.html autoassign.html misc.html files.html install.html newstuff.html changelog.html indx.html index.html manual.html manual-postscript.gz PQR2.1.html /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/manual cd /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/manual ; \ chmod 644 overview.html intro.html views.html peaks.html extensions.html autoassign.html misc.html files.html install.html newstuff.html changelog.html indx.html index.html manual.html manual-postscript.gz PQR2.1.html cd images ; \ \cp assign.gif assigngraph.gif assignlist.gif c30.gif chemshift.gif chimera.gif chimera-dialog.gif color-key-8.gif contour-scale.gif g28-2d.gif g28-3d.gif g28-both.gif g28-key.gif integ.gif k15-fixed.gif k15-problem.gif levels.gif modes.gif n15hsqc.gif peaklist.gif pick.gif reslist.gif run-autoassign.gif s47-fixed.gif s47-gap.gif s47-list.gif spingraph.gif spingraphopt.gif stripmatch.gif stripplot.gif strips.gif stripspect.gif view.gif y35.gif /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/manual/images cd /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/manual/images ; \ chmod 644 assign.gif assigngraph.gif assignlist.gif c30.gif chemshift.gif chimera.gif chimera-dialog.gif color-key-8.gif contour-scale.gif g28-2d.gif g28-3d.gif g28-both.gif g28-key.gif integ.gif k15-fixed.gif k15-problem.gif levels.gif modes.gif n15hsqc.gif peaklist.gif pick.gif reslist.gif run-autoassign.gif s47-fixed.gif s47-gap.gif s47-list.gif spingraph.gif spingraphopt.gif stripmatch.gif stripplot.gif strips.gif stripspect.gif view.gif y35.gif cd /sw/build.build/sparky-py27-3.115-1004/sparky ; \cp LICENSE README /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27 cd /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27 ; chmod 644 LICENSE README cd /sw/build.build/sparky-py27-3.115-1004/sparky/c++ && \ /Applications/Xcode.app/Contents/Developer/usr/bin/make -f /sw/build.build/sparky-py27-3.115-1004/sparky/c++/Makefile -e install-python mkdir /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python chmod 755 /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python mkdir /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/sparky chmod 755 /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/sparky mkdir /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk chmod 755 /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk \cp spy.so /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/sparky chmod 755 /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/sparky/spy.so \cp _tkinter.so /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk chmod 755 /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/_tkinter.so cd /sw/build.build/sparky-py27-3.115-1004/sparky/python && /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Makefile -e install \cp README /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python \cp __init__.py align.py assigngraph.py atomnames.py atoms.py autoassign.py axes.py centerview.py chemshift.py chimeraview.py copylinewidth.py corma.py cormaspectrum.py curvefit.py distance.py expectedpeaks.py foldspectrum.py hcpeaks.py linewidthplot.py mardigras.py midas.py midasconstraint.py midaspick.py mirror.py movepeaks.py noesy.py noesyassign.py openspectra.py pdb.py peaklist.py peaktable.py pythonshell.py pyutil.py readpeaks.py regionrmsd.py relax.py reposition.py restrictedpick.py sequence.py shiftstats.py sparky_init.py sparky_site.py spingraph.py spinlayout.py sputil.py start_in_chimera.py strips.py subprocess.py tkutil.py volumeerror.py xeasy.py xplor.py /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/sparky \cp lib-tk/*.py /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk chmod 644 /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/README cd /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/sparky ; chmod 644 __init__.py align.py assigngraph.py atomnames.py atoms.py autoassign.py axes.py centerview.py chemshift.py chimeraview.py copylinewidth.py corma.py cormaspectrum.py curvefit.py distance.py expectedpeaks.py foldspectrum.py hcpeaks.py linewidthplot.py mardigras.py midas.py midasconstraint.py midaspick.py mirror.py movepeaks.py noesy.py noesyassign.py openspectra.py pdb.py peaklist.py peaktable.py pythonshell.py pyutil.py readpeaks.py regionrmsd.py relax.py reposition.py restrictedpick.py sequence.py shiftstats.py sparky_init.py sparky_site.py spingraph.py spinlayout.py sputil.py start_in_chimera.py strips.py subprocess.py tkutil.py volumeerror.py xeasy.py xplor.py chmod 644 /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/*.py /sw/bin/python2.7 /sw/lib/python2.7/compileall.py -d 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Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/Canvas.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/Dialog.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/FileDialog.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/FixTk.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/ScrolledText.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/SimpleDialog.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/Tix.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/Tkconstants.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/Tkdnd.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/Tkinter.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/tkColorChooser.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/tkCommonDialog.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/tkFileDialog.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/tkFont.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/tkMessageBox.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/tkSimpleDialog.py ... Compiling /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk/turtle.py ... cp /sw/build.build/sparky-py27-3.115-1004/sparky/c++/_tkinter.so /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/lib-tk cp /sw/build.build/sparky-py27-3.115-1004/sparky/c++/spy.so /sw/build.build/root-sparky-py27-3.115-1004/sw/lib/sparky-py27/python/sparky sudo -u fink-bld [ENV] sh -c /tmp/fink.mJB3e /usr/bin/install -d -m 700 /sw/build.build/root-sparky-py27-3.115-1004/sw/share/doc/sparky-py27 /bin/cp -r LICENSE /sw/build.build/root-sparky-py27-3.115-1004/sw/share/doc/sparky-py27/ /bin/cp -r README /sw/build.build/root-sparky-py27-3.115-1004/sw/share/doc/sparky-py27/ /bin/chmod -R go=u-w /sw/build.build/root-sparky-py27-3.115-1004/sw/share/doc/sparky-py27 /bin/rm -f /sw/build.build/root-sparky-py27-3.115-1004/sw/info/dir /sw/build.build/root-sparky-py27-3.115-1004/sw/info/dir.old /sw/build.build/root-sparky-py27-3.115-1004/sw/share/info/dir /sw/build.build/root-sparky-py27-3.115-1004/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing package script postinst... Writing package script prerm... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-sparky-py27-3.115-1004 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `sparky-py27' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/sparky-py27_3.115-1004_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-sparky-py27-3.115-1004 (Reading database ... 13890 files and directories currently installed.) Removing fink-buildlock-sparky-py27-3.115-1004 ...